Wall clock time and date at job start Tue Mar 31 2020 18:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.34255 * 126.52346 * 2 1 4 4 C 1.34045 * 108.22631 * 180.02562 * 3 2 1 5 5 N 1.29942 * 109.24313 * 0.24248 * 4 3 2 6 6 C 1.36070 * 108.47331 * 359.61522 * 5 4 3 7 7 C 1.47418 * 126.44449 * 180.15621 * 6 5 4 8 8 O 1.21607 * 119.99970 * 180.26855 * 7 6 5 9 9 N 1.34776 * 120.00054 * 0.26636 * 7 6 5 10 10 C 1.47019 * 125.65225 * 359.69101 * 9 7 6 11 11 C 1.54314 * 107.28052 * 180.97154 * 10 9 7 12 12 C 1.55158 * 102.86041 * 22.52419 * 11 10 9 13 13 H 1.09003 * 111.03169 * 82.39525 * 12 11 10 14 14 N 1.46904 * 111.00351 * 206.22871 * 12 11 10 15 15 C 1.46898 * 110.99953 * 297.95588 * 14 12 11 16 16 C 1.53238 * 109.34012 * 172.74592 * 15 14 12 17 17 N 1.47078 * 108.52026 * 53.82947 * 16 15 14 18 18 C 1.36939 * 120.88358 * 128.79610 * 17 16 15 19 19 H 1.08001 * 120.00007 * 206.60188 * 18 17 16 20 20 C 1.38813 * 119.99897 * 26.59781 * 18 17 16 21 21 N 1.31623 * 119.99608 * 17.00582 * 20 18 17 22 22 Si 1.86796 * 120.00252 * 197.00116 * 20 18 17 23 23 H 1.48504 * 109.46972 * 89.99876 * 22 20 18 24 24 H 1.48492 * 109.47341 * 210.00508 * 22 20 18 25 25 H 1.48502 * 109.47020 * 330.00440 * 22 20 18 26 26 C 1.47084 * 118.23900 * 308.81662 * 17 16 15 27 27 C 1.46897 * 110.99724 * 173.65260 * 14 12 11 28 28 C 1.47431 * 125.64683 * 180.02562 * 9 7 6 29 29 H 1.08999 * 109.47244 * 359.97272 * 1 2 3 30 30 H 1.09000 * 109.47419 * 119.97617 * 1 2 3 31 31 H 1.09006 * 109.46784 * 239.97468 * 1 2 3 32 32 H 1.08004 * 125.38062 * 179.97438 * 4 3 2 33 33 H 1.09007 * 109.88492 * 300.51620 * 10 9 7 34 34 H 1.09004 * 109.87899 * 61.67882 * 10 9 7 35 35 H 1.09000 * 110.92252 * 264.11470 * 11 10 9 36 36 H 1.08999 * 110.74579 * 140.86256 * 11 10 9 37 37 H 1.09003 * 109.49469 * 292.70735 * 15 14 12 38 38 H 1.09005 * 109.49577 * 52.78819 * 15 14 12 39 39 H 1.09004 * 109.62901 * 294.12293 * 16 15 14 40 40 H 1.08993 * 109.63145 * 173.54004 * 16 15 14 41 41 H 0.96999 * 119.99214 * 179.97438 * 21 20 18 42 42 H 1.08996 * 109.62926 * 291.47554 * 26 17 16 43 43 H 1.08995 * 109.63114 * 170.89386 * 26 17 16 44 44 H 1.08998 * 109.49595 * 307.21579 * 27 14 12 45 45 H 1.09005 * 109.49034 * 67.27080 * 27 14 12 46 46 H 1.09000 * 110.36579 * 274.66802 * 28 9 7 47 47 H 1.09003 * 110.36505 * 36.88596 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5787 0.6581 -0.0006 5 7 3.6002 -0.6412 -0.0061 6 6 2.3169 -1.0936 -0.0006 7 6 1.8853 -2.5032 -0.0008 8 8 0.7003 -2.7762 -0.0004 9 7 2.8041 -3.4893 -0.0014 10 6 4.2622 -3.3019 -0.0084 11 6 4.9046 -4.7048 -0.0313 12 6 3.7741 -5.5927 -0.6154 13 1 3.7544 -5.5353 -1.7037 14 7 3.9129 -6.9846 -0.1667 15 6 5.1773 -7.5658 -0.6373 16 6 5.3684 -8.9472 -0.0021 17 7 4.1716 -9.7570 -0.2762 18 6 4.2800 -11.0116 -0.8142 19 1 3.4679 -11.4214 -1.3965 20 6 5.4335 -11.7566 -0.6112 21 7 6.2710 -11.4245 0.3484 22 14 5.7972 -13.2305 -1.6996 23 1 6.5857 -12.7922 -2.8792 24 1 6.5745 -14.2346 -0.9298 25 1 4.5203 -13.8364 -2.1553 26 6 2.8553 -9.1834 0.0424 27 6 2.7632 -7.7927 -0.5945 28 6 2.5132 -4.9346 -0.0022 29 1 -0.3634 1.0276 0.0005 30 1 -0.3634 -0.5135 -0.8902 31 1 -0.3633 -0.5143 0.8898 32 1 4.4489 1.2978 -0.0011 33 1 4.5598 -2.7414 -0.8947 34 1 4.5718 -2.7692 0.8909 35 1 5.1681 -5.0288 0.9755 36 1 5.7800 -4.7181 -0.6806 37 1 5.1505 -7.6650 -1.7225 38 1 6.0049 -6.9165 -0.3514 39 1 5.4993 -8.8401 1.0747 40 1 6.2445 -9.4308 -0.4340 41 1 7.0769 -11.9453 0.4904 42 1 2.7446 -9.0990 1.1235 43 1 2.0699 -9.8232 -0.3600 44 1 1.8398 -7.3079 -0.2776 45 1 2.7697 -7.8883 -1.6803 46 1 2.3569 -5.2906 1.0161 47 1 1.6371 -5.1449 -0.6156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051992029.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:16 Heat of formation + Delta-G solvation = 35.480220 kcal Electronic energy + Delta-G solvation = -29096.420946 eV Core-core repulsion = 25089.224411 eV Total energy + Delta-G solvation = -4007.196534 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.79207 -40.10284 -38.45526 -36.77851 -35.20977 -34.10829 -32.76189 -31.67742 -30.32410 -30.15226 -28.66061 -27.62510 -26.02048 -24.46234 -23.27160 -22.84499 -22.32839 -21.75972 -20.33150 -19.81562 -19.12551 -17.89958 -17.30561 -17.02757 -16.64111 -16.16679 -15.57336 -15.08935 -14.89295 -14.63505 -14.28090 -14.08025 -13.87456 -13.75885 -13.43827 -13.41084 -13.29498 -13.14188 -12.84262 -12.74720 -12.60123 -12.29394 -11.79818 -11.70699 -11.32421 -11.18604 -11.06946 -10.93930 -10.75519 -10.73170 -10.40824 -10.28296 -10.26654 -10.02327 -9.71394 -9.57979 -9.31728 -8.67152 -8.49749 -7.87422 -6.65667 -5.77026 -3.17991 0.76494 1.73117 2.18845 2.76616 3.08437 3.38618 3.45547 3.46801 3.66706 4.23449 4.28292 4.32144 4.51422 4.69319 4.72444 4.77669 5.04420 5.13398 5.14593 5.31742 5.35844 5.41237 5.45715 5.49696 5.59920 5.62820 5.75262 5.82510 5.85392 5.90933 5.96157 6.01596 6.12865 6.16883 6.21871 6.31938 6.35508 6.54679 6.70316 6.94558 7.07944 7.24598 7.36167 7.58491 7.64425 7.70417 7.82742 7.94993 8.44747 9.22642 9.85918 10.44354 11.31822 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.034003 B = 0.002211 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.269054 B =12658.936601 C =13228.539224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.043 3.957 3 O -0.200 6.200 4 C 0.171 3.829 5 N -0.458 5.458 6 C -0.073 4.073 7 C 0.614 3.386 8 O -0.538 6.538 9 N -0.600 5.600 10 C 0.117 3.883 11 C -0.126 4.126 12 C 0.069 3.931 13 H 0.050 0.950 14 N -0.520 5.520 15 C 0.036 3.964 16 C 0.178 3.822 17 N -0.596 5.596 18 C -0.250 4.250 19 H 0.066 0.934 20 C 0.000 4.000 21 N -0.904 5.904 22 Si 0.903 3.097 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.149 3.851 27 C 0.041 3.959 28 C 0.118 3.882 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.255 0.745 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.025 0.975 38 H 0.063 0.937 39 H 0.027 0.973 40 H 0.089 0.911 41 H 0.254 0.746 42 H 0.026 0.974 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.028 0.972 46 H 0.083 0.917 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.519 26.319 -0.851 26.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.014 4.014 3 O -0.087 6.087 4 C -0.058 4.058 5 N -0.187 5.187 6 C -0.192 4.192 7 C 0.402 3.598 8 O -0.416 6.416 9 N -0.333 5.333 10 C -0.006 4.006 11 C -0.164 4.164 12 C -0.041 4.041 13 H 0.068 0.932 14 N -0.246 5.246 15 C -0.092 4.092 16 C 0.052 3.948 17 N -0.319 5.319 18 C -0.380 4.380 19 H 0.084 0.916 20 C -0.198 4.198 21 N -0.548 5.548 22 Si 0.733 3.267 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.205 1.205 26 C 0.023 3.977 27 C -0.088 4.088 28 C -0.005 4.005 29 H 0.097 0.903 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.270 0.730 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.043 0.957 38 H 0.082 0.918 39 H 0.045 0.955 40 H 0.107 0.893 41 H 0.064 0.936 42 H 0.044 0.956 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.047 0.953 46 H 0.101 0.899 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.498 25.735 -0.295 26.317 hybrid contribution 0.090 -0.205 -1.436 1.454 sum -5.408 25.530 -1.731 26.153 Atomic orbital electron populations 1.20470 0.82482 1.03864 1.05676 1.23741 0.95235 0.83322 0.99109 1.84381 1.18653 1.36221 1.69434 1.28067 0.85221 0.91355 1.01116 1.70880 1.21655 1.09847 1.16278 1.21398 0.88871 0.95331 1.13646 1.16274 0.84548 0.81996 0.77020 1.90811 1.15780 1.83106 1.51860 1.48145 1.07392 1.06342 1.71398 1.22068 0.78582 0.97241 1.02710 1.22765 0.97663 0.92788 1.03221 1.22741 0.94282 0.90239 0.96845 0.93208 1.62019 1.03622 0.99316 1.59622 1.22914 0.89710 0.99142 0.97472 1.20869 0.91249 0.85537 0.97118 1.44132 0.99934 1.14527 1.73317 1.19208 1.02525 0.91605 1.24667 0.91638 1.25023 0.99491 0.97889 0.97401 1.70032 1.13591 1.41305 1.29898 0.86280 0.78054 0.82275 0.80113 1.21538 1.21763 1.20488 1.20972 0.89356 0.90577 0.96830 1.22678 0.92138 0.96241 0.97769 1.22276 0.97881 0.77994 1.02323 0.90263 0.88202 0.88150 0.72961 0.90935 0.90749 0.89245 0.90164 0.95683 0.91847 0.95515 0.89321 0.93643 0.95578 0.92590 0.91846 0.95323 0.89883 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 9.13 36.01 0.33 -0.17 16 2 C 0.04 0.41 7.44 -35.08 -0.26 0.15 16 3 O -0.20 -1.63 10.73 6.53 0.07 -1.56 16 4 C 0.17 1.16 13.19 51.96 0.69 1.85 16 5 N -0.46 -4.68 8.84 -11.48 -0.10 -4.78 16 6 C -0.07 -0.86 6.83 -83.02 -0.57 -1.43 16 7 C 0.61 8.60 7.85 -12.52 -0.10 8.50 16 8 O -0.54 -8.48 15.86 5.27 0.08 -8.40 16 9 N -0.60 -8.08 3.33 -171.80 -0.57 -8.65 16 10 C 0.12 1.35 5.52 -3.07 -0.02 1.34 16 11 C -0.13 -1.53 5.35 -24.90 -0.13 -1.66 16 12 C 0.07 0.98 2.71 -65.57 -0.18 0.80 16 13 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 14 N -0.52 -8.99 4.53 -223.79 -1.01 -10.01 16 15 C 0.04 0.69 5.48 -3.70 -0.02 0.67 16 16 C 0.18 4.26 5.42 -3.60 -0.02 4.24 16 17 N -0.60 -15.08 3.04 -172.01 -0.52 -15.60 16 18 C -0.25 -6.91 9.63 -15.06 -0.15 -7.05 16 19 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 20 C 0.00 0.01 4.94 -17.43 -0.09 -0.08 16 21 N -0.90 -26.21 11.15 55.49 0.62 -25.59 16 22 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.15 3.19 6.69 -3.60 -0.02 3.16 16 27 C 0.04 0.74 5.48 -3.70 -0.02 0.72 16 28 C 0.12 1.64 5.32 -2.54 -0.01 1.63 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 0.75 8.08 -51.93 -0.42 0.33 16 31 H 0.10 0.75 8.08 -51.93 -0.42 0.33 16 32 H 0.25 0.38 8.06 -52.48 -0.42 -0.05 16 33 H 0.07 0.82 7.64 -51.92 -0.40 0.42 16 34 H 0.07 0.84 7.74 -51.93 -0.40 0.44 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.08 0.89 7.93 -51.93 -0.41 0.48 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 1.07 6.87 -51.93 -0.36 0.71 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 2.35 6.12 -51.93 -0.32 2.03 16 41 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.06 1.15 7.95 -51.93 -0.41 0.74 16 44 H 0.06 1.00 6.79 -51.93 -0.35 0.64 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.08 1.11 7.74 -51.93 -0.40 0.70 16 LS Contribution 373.66 15.07 5.63 5.63 Total: -1.00 -33.02 373.66 -8.65 -41.67 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -7.24 Total: -2.10 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: -0.57 Total: 12.67 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -1.59 Total: -64.64 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.15 Total: -9.96 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.02 -8.65 -41.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051992029.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.149 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds