Wall clock time and date at job start Tue Mar 31 2020 18:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.34255 * 126.52346 * 2 1 4 4 C 1.34045 * 108.22631 * 180.02562 * 3 2 1 5 5 N 1.29942 * 109.24313 * 0.24248 * 4 3 2 6 6 C 1.36070 * 108.47331 * 359.61522 * 5 4 3 7 7 C 1.47418 * 126.44449 * 180.15621 * 6 5 4 8 8 O 1.21607 * 119.99970 * 180.26855 * 7 6 5 9 9 N 1.34776 * 120.00054 * 0.26636 * 7 6 5 10 10 C 1.47019 * 125.65225 * 359.69101 * 9 7 6 11 11 C 1.54314 * 107.28052 * 180.97154 * 10 9 7 12 12 C 1.55158 * 102.86041 * 22.52419 * 11 10 9 13 13 H 1.09003 * 111.03169 * 82.39525 * 12 11 10 14 14 N 1.46904 * 111.00351 * 206.22871 * 12 11 10 15 15 C 1.46898 * 110.99953 * 297.95588 * 14 12 11 16 16 C 1.53238 * 109.34012 * 172.74592 * 15 14 12 17 17 N 1.47078 * 108.52026 * 53.82947 * 16 15 14 18 18 C 1.36939 * 120.88358 * 128.79610 * 17 16 15 19 19 H 1.08001 * 120.00007 * 206.60188 * 18 17 16 20 20 C 1.38813 * 119.99897 * 26.59781 * 18 17 16 21 21 N 1.31623 * 119.99608 * 17.00582 * 20 18 17 22 22 Si 1.86796 * 120.00252 * 197.00116 * 20 18 17 23 23 H 1.48504 * 109.46972 * 89.99876 * 22 20 18 24 24 H 1.48492 * 109.47341 * 210.00508 * 22 20 18 25 25 H 1.48502 * 109.47020 * 330.00440 * 22 20 18 26 26 C 1.47084 * 118.23900 * 308.81662 * 17 16 15 27 27 C 1.46897 * 110.99724 * 173.65260 * 14 12 11 28 28 C 1.47431 * 125.64683 * 180.02562 * 9 7 6 29 29 H 1.08999 * 109.47244 * 359.97272 * 1 2 3 30 30 H 1.09000 * 109.47419 * 119.97617 * 1 2 3 31 31 H 1.09006 * 109.46784 * 239.97468 * 1 2 3 32 32 H 1.08004 * 125.38062 * 179.97438 * 4 3 2 33 33 H 1.09007 * 109.88492 * 300.51620 * 10 9 7 34 34 H 1.09004 * 109.87899 * 61.67882 * 10 9 7 35 35 H 1.09000 * 110.92252 * 264.11470 * 11 10 9 36 36 H 1.08999 * 110.74579 * 140.86256 * 11 10 9 37 37 H 1.09003 * 109.49469 * 292.70735 * 15 14 12 38 38 H 1.09005 * 109.49577 * 52.78819 * 15 14 12 39 39 H 1.09004 * 109.62901 * 294.12293 * 16 15 14 40 40 H 1.08993 * 109.63145 * 173.54004 * 16 15 14 41 41 H 0.96999 * 119.99214 * 179.97438 * 21 20 18 42 42 H 1.08996 * 109.62926 * 291.47554 * 26 17 16 43 43 H 1.08995 * 109.63114 * 170.89386 * 26 17 16 44 44 H 1.08998 * 109.49595 * 307.21579 * 27 14 12 45 45 H 1.09005 * 109.49034 * 67.27080 * 27 14 12 46 46 H 1.09000 * 110.36579 * 274.66802 * 28 9 7 47 47 H 1.09003 * 110.36505 * 36.88596 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5787 0.6581 -0.0006 5 7 3.6002 -0.6412 -0.0061 6 6 2.3169 -1.0936 -0.0006 7 6 1.8853 -2.5032 -0.0008 8 8 0.7003 -2.7762 -0.0004 9 7 2.8041 -3.4893 -0.0014 10 6 4.2622 -3.3019 -0.0084 11 6 4.9046 -4.7048 -0.0313 12 6 3.7741 -5.5927 -0.6154 13 1 3.7544 -5.5353 -1.7037 14 7 3.9129 -6.9846 -0.1667 15 6 5.1773 -7.5658 -0.6373 16 6 5.3684 -8.9472 -0.0021 17 7 4.1716 -9.7570 -0.2762 18 6 4.2800 -11.0116 -0.8142 19 1 3.4679 -11.4214 -1.3965 20 6 5.4335 -11.7566 -0.6112 21 7 6.2710 -11.4245 0.3484 22 14 5.7972 -13.2305 -1.6996 23 1 6.5857 -12.7922 -2.8792 24 1 6.5745 -14.2346 -0.9298 25 1 4.5203 -13.8364 -2.1553 26 6 2.8553 -9.1834 0.0424 27 6 2.7632 -7.7927 -0.5945 28 6 2.5132 -4.9346 -0.0022 29 1 -0.3634 1.0276 0.0005 30 1 -0.3634 -0.5135 -0.8902 31 1 -0.3633 -0.5143 0.8898 32 1 4.4489 1.2978 -0.0011 33 1 4.5598 -2.7414 -0.8947 34 1 4.5718 -2.7692 0.8909 35 1 5.1681 -5.0288 0.9755 36 1 5.7800 -4.7181 -0.6806 37 1 5.1505 -7.6650 -1.7225 38 1 6.0049 -6.9165 -0.3514 39 1 5.4993 -8.8401 1.0747 40 1 6.2445 -9.4308 -0.4340 41 1 7.0769 -11.9453 0.4904 42 1 2.7446 -9.0990 1.1235 43 1 2.0699 -9.8232 -0.3600 44 1 1.8398 -7.3079 -0.2776 45 1 2.7697 -7.8883 -1.6803 46 1 2.3569 -5.2906 1.0161 47 1 1.6371 -5.1449 -0.6156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051992029.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:15 Heat of formation + Delta-G solvation = 11.350966 kcal Electronic energy + Delta-G solvation = -29097.467269 eV Core-core repulsion = 25089.224411 eV Total energy + Delta-G solvation = -4008.242857 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.44023 -41.19581 -39.80091 -38.14817 -36.03724 -35.66034 -33.41302 -33.39042 -31.83247 -31.63390 -29.85745 -28.56217 -27.56233 -25.57038 -24.55597 -24.46310 -23.36604 -22.70327 -21.57184 -20.82004 -20.68355 -18.88258 -18.73308 -17.97597 -17.63605 -17.33936 -16.84455 -16.45677 -16.03219 -15.67314 -15.59636 -15.50013 -15.26687 -15.18218 -14.91582 -14.57967 -14.53409 -14.04343 -13.94672 -13.81445 -13.64146 -13.39079 -13.26918 -12.98734 -12.69760 -12.57014 -12.53987 -12.43130 -12.19324 -12.02193 -11.90455 -11.81674 -11.70709 -11.45258 -11.36209 -11.25812 -10.58217 -10.08511 -9.66069 -9.33351 -8.68264 -7.87297 -5.31758 0.02227 1.05956 1.47099 1.47981 1.53452 1.57177 1.84280 2.15869 2.50981 2.90176 3.04814 3.27814 3.39394 3.63055 3.65903 3.69870 3.76699 4.05266 4.19300 4.22912 4.31542 4.33223 4.37959 4.38851 4.54823 4.57210 4.59785 4.63638 4.68298 4.84003 4.87832 4.88368 4.89681 4.96988 5.02059 5.07770 5.12374 5.19181 5.21540 5.28610 5.37980 5.61766 5.70390 6.12287 6.21833 6.30890 6.38109 6.47667 6.93641 7.14050 7.84255 8.38337 9.19507 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.034003 B = 0.002211 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.269054 B =12658.936601 C =13228.539224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.047 3.953 3 O -0.198 6.198 4 C 0.195 3.805 5 N -0.488 5.488 6 C -0.104 4.104 7 C 0.607 3.393 8 O -0.566 6.566 9 N -0.605 5.605 10 C 0.128 3.872 11 C -0.119 4.119 12 C 0.073 3.927 13 H 0.052 0.948 14 N -0.526 5.526 15 C 0.055 3.945 16 C 0.185 3.815 17 N -0.615 5.615 18 C -0.263 4.263 19 H 0.066 0.934 20 C -0.051 4.051 21 N -0.934 5.934 22 Si 0.968 3.032 23 H -0.285 1.285 24 H -0.294 1.294 25 H -0.270 1.270 26 C 0.146 3.854 27 C 0.053 3.947 28 C 0.123 3.877 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.304 0.696 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.019 0.981 38 H 0.089 0.911 39 H 0.000 1.000 40 H 0.058 0.942 41 H 0.251 0.749 42 H 0.017 0.983 43 H 0.059 0.941 44 H 0.088 0.912 45 H 0.024 0.976 46 H 0.074 0.926 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.345 28.824 -1.707 29.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.011 4.011 3 O -0.085 6.085 4 C -0.034 4.034 5 N -0.216 5.216 6 C -0.222 4.222 7 C 0.397 3.603 8 O -0.446 6.446 9 N -0.337 5.337 10 C 0.005 3.995 11 C -0.157 4.157 12 C -0.036 4.036 13 H 0.070 0.930 14 N -0.251 5.251 15 C -0.074 4.074 16 C 0.059 3.941 17 N -0.339 5.339 18 C -0.393 4.393 19 H 0.084 0.916 20 C -0.247 4.247 21 N -0.580 5.580 22 Si 0.797 3.203 23 H -0.211 1.211 24 H -0.221 1.221 25 H -0.195 1.195 26 C 0.020 3.980 27 C -0.076 4.076 28 C 0.000 4.000 29 H 0.125 0.875 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.319 0.681 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.037 0.963 38 H 0.107 0.893 39 H 0.018 0.982 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.035 0.965 43 H 0.077 0.923 44 H 0.106 0.894 45 H 0.042 0.958 46 H 0.093 0.907 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.335 28.256 -1.156 28.778 hybrid contribution 0.010 -0.887 -1.115 1.425 sum -5.324 27.368 -2.270 27.974 Atomic orbital electron populations 1.20528 0.81321 1.05473 1.05095 1.24034 0.96072 0.83167 0.97806 1.84426 1.19142 1.35558 1.69355 1.29210 0.85745 0.90925 0.97489 1.70824 1.20950 1.11563 1.18265 1.21203 0.90273 0.94520 1.16229 1.16661 0.84263 0.83040 0.76351 1.90779 1.16848 1.83790 1.53180 1.48225 1.08205 1.05906 1.71346 1.22039 0.77370 0.96797 1.03260 1.22756 0.97466 0.92388 1.03090 1.22708 0.95565 0.88362 0.96975 0.93011 1.61928 1.02602 1.00713 1.59873 1.22580 0.91571 0.96841 0.96455 1.20646 0.90005 0.87855 0.95558 1.44423 1.01583 1.14397 1.73497 1.19521 1.02654 0.92601 1.24556 0.91636 1.25784 0.99463 1.00765 0.98646 1.70187 1.13894 1.42548 1.31416 0.85249 0.77930 0.78949 0.78202 1.21134 1.22093 1.19512 1.21098 0.87772 0.92570 0.96575 1.22488 0.93531 0.94521 0.97062 1.22111 0.97488 0.78759 1.01609 0.87547 0.88707 0.88699 0.68125 0.90234 0.90287 0.89740 0.88507 0.96257 0.89287 0.98154 0.92330 0.94028 0.96495 0.92255 0.89358 0.95763 0.90746 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 9.13 71.24 0.65 -0.25 16 2 C 0.05 0.83 7.44 25.19 0.19 1.01 16 3 O -0.20 -2.66 10.73 0.44 0.00 -2.66 16 4 C 0.19 1.98 13.19 130.52 1.72 3.70 16 5 N -0.49 -8.87 8.84 -305.15 -2.70 -11.57 16 6 C -0.10 -2.33 6.83 40.40 0.28 -2.06 16 7 C 0.61 16.78 7.85 86.66 0.68 17.46 16 8 O -0.57 -17.98 15.86 -4.05 -0.06 -18.05 16 9 N -0.60 -15.74 3.33 -815.70 -2.71 -18.45 16 10 C 0.13 2.73 5.52 86.73 0.48 3.20 16 11 C -0.12 -2.64 5.35 31.78 0.17 -2.47 16 12 C 0.07 1.98 2.71 46.30 0.13 2.10 16 13 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 14 N -0.53 -17.70 4.53 -861.92 -3.90 -21.61 16 15 C 0.05 2.04 5.48 86.38 0.47 2.52 16 16 C 0.19 9.06 5.42 86.35 0.47 9.53 16 17 N -0.61 -31.72 3.04 -698.13 -2.12 -33.84 16 18 C -0.26 -14.73 9.63 84.03 0.81 -13.92 16 19 H 0.07 3.59 7.88 -2.91 -0.02 3.56 16 20 C -0.05 -2.89 4.94 84.86 0.42 -2.47 16 21 N -0.93 -55.62 11.15 21.65 0.24 -55.38 16 22 Si 0.97 45.24 29.59 68.60 2.03 47.27 16 23 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 C 0.15 6.26 6.69 86.35 0.58 6.84 16 27 C 0.05 1.87 5.48 86.38 0.47 2.34 16 28 C 0.12 3.34 5.32 86.85 0.46 3.81 16 29 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 1.37 8.08 -2.39 -0.02 1.35 16 31 H 0.09 1.38 8.08 -2.38 -0.02 1.36 16 32 H 0.30 -0.61 8.06 -2.91 -0.02 -0.63 16 33 H 0.08 1.62 7.64 -2.38 -0.02 1.60 16 34 H 0.08 1.64 7.74 -2.38 -0.02 1.62 16 35 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.10 1.86 7.93 -2.39 -0.02 1.84 16 37 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.09 2.86 6.87 -2.38 -0.02 2.85 16 39 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 40 H 0.06 3.20 6.12 -2.39 -0.01 3.19 16 41 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 42 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.06 2.46 7.95 -2.39 -0.02 2.44 16 44 H 0.09 2.67 6.79 -2.39 -0.02 2.65 16 45 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 46 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.07 2.01 7.74 -2.39 -0.02 1.99 16 Total: -1.00 -73.39 373.66 -0.28 -73.67 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 0.97 Total: 9.27 kcal Atomic # 6 Polarization: 23.36 SS G_CDS: 7.97 Total: 31.34 kcal Atomic # 7 Polarization: -129.65 SS G_CDS: -11.19 Total: -140.84 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.06 Total: -20.70 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -73.39 -0.28 -73.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051992029.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.021 kcal (2) G-P(sol) polarization free energy of solvation -73.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds