Wall clock time and date at job start Tue Mar 31 2020 18:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34258 * 126.53239 * 2 1 4 4 C 1.34046 * 108.23050 * 179.97438 * 3 2 1 5 5 N 1.29932 * 109.24579 * 0.02562 * 4 3 2 6 6 C 1.36072 * 108.47436 * 359.73039 * 5 4 3 7 7 C 1.47427 * 126.45012 * 180.30850 * 6 5 4 8 8 O 1.21604 * 119.99951 * 180.14668 * 7 6 5 9 9 N 1.34779 * 119.99797 * 0.13859 * 7 6 5 10 10 C 1.47028 * 125.64720 * 359.69349 * 9 7 6 11 11 C 1.54331 * 107.26350 * 178.84775 * 10 9 7 12 12 C 1.55160 * 103.02395 * 338.14232 * 11 10 9 13 13 H 1.08995 * 111.03907 * 277.22219 * 12 11 10 14 14 N 1.46898 * 111.00551 * 153.37418 * 12 11 10 15 15 C 1.46900 * 110.99852 * 186.40580 * 14 12 11 16 16 C 1.53245 * 109.33852 * 172.75429 * 15 14 12 17 17 N 1.47072 * 108.52198 * 53.82720 * 16 15 14 18 18 C 1.36936 * 120.88206 * 128.84005 * 17 16 15 19 19 H 1.07997 * 120.00316 * 209.18706 * 18 17 16 20 20 C 1.38820 * 119.99885 * 29.18322 * 18 17 16 21 21 N 1.31614 * 119.99727 * 13.33062 * 20 18 17 22 22 Si 1.86801 * 120.00062 * 193.33280 * 20 18 17 23 23 H 1.48507 * 109.47043 * 60.00208 * 22 20 18 24 24 H 1.48502 * 109.47008 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47136 * 299.99960 * 22 20 18 26 26 C 1.47079 * 118.24316 * 308.81633 * 17 16 15 27 27 C 1.46907 * 110.99662 * 62.11137 * 14 12 11 28 28 C 1.47421 * 125.64881 * 180.02562 * 9 7 6 29 29 H 1.08998 * 109.46745 * 0.02857 * 1 2 3 30 30 H 1.08997 * 109.46912 * 120.01992 * 1 2 3 31 31 H 1.09000 * 109.47247 * 240.02535 * 1 2 3 32 32 H 1.07999 * 125.37442 * 179.97438 * 4 3 2 33 33 H 1.08994 * 109.88259 * 298.39418 * 10 9 7 34 34 H 1.09005 * 109.88041 * 59.56100 * 10 9 7 35 35 H 1.08997 * 110.85489 * 219.67384 * 11 10 9 36 36 H 1.09007 * 110.66826 * 96.52349 * 11 10 9 37 37 H 1.08996 * 109.49322 * 292.70815 * 15 14 12 38 38 H 1.08993 * 109.49409 * 52.79306 * 15 14 12 39 39 H 1.09005 * 109.62581 * 294.11786 * 16 15 14 40 40 H 1.08994 * 109.78754 * 173.63826 * 16 15 14 41 41 H 0.96998 * 120.00013 * 180.02562 * 21 20 18 42 42 H 1.08996 * 109.62944 * 291.47604 * 26 17 16 43 43 H 1.08999 * 109.79362 * 170.98763 * 26 17 16 44 44 H 1.08996 * 109.48780 * 307.20981 * 27 14 12 45 45 H 1.08996 * 109.49556 * 67.28985 * 27 14 12 46 46 H 1.08999 * 110.36423 * 322.93716 * 28 9 7 47 47 H 1.09008 * 110.36602 * 85.14138 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3062 1.0788 0.0000 4 6 3.5789 0.6578 0.0006 5 7 3.6003 -0.6413 0.0004 6 6 2.3170 -1.0937 0.0057 7 6 1.8852 -2.5033 0.0138 8 8 0.7001 -2.7762 0.0154 9 7 2.8039 -3.4894 0.0194 10 6 4.2621 -3.3021 0.0117 11 6 4.9044 -4.7048 0.0519 12 6 3.7749 -5.5897 0.6425 13 1 3.7570 -5.5267 1.7305 14 7 3.9128 -6.9839 0.2007 15 6 2.7631 -7.7893 0.6335 16 6 2.8542 -9.1833 0.0035 17 7 4.1705 -9.7558 0.3240 18 6 4.2789 -11.0080 0.8674 19 1 5.1107 -11.2460 1.5138 20 6 3.3196 -11.9716 0.5875 21 7 2.4605 -11.7800 -0.3910 22 14 3.2481 -13.5400 1.5997 23 1 3.0086 -13.1988 3.0250 24 1 2.1424 -14.3987 1.1043 25 1 4.5358 -14.2689 1.4747 26 6 5.3674 -8.9479 0.0449 27 6 5.1774 -7.5632 0.6733 28 6 2.5130 -4.9346 0.0271 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5141 -0.8898 31 1 -0.3634 -0.5134 0.8902 32 1 4.4490 1.2976 0.0003 33 1 4.5640 -2.7798 -0.8961 34 1 4.5671 -2.7315 0.8890 35 1 5.7797 -4.7124 0.7014 36 1 5.1684 -5.0360 -0.9525 37 1 2.7707 -7.8800 1.7197 38 1 1.8397 -7.3058 0.3149 39 1 2.7427 -9.1044 -1.0779 40 1 2.0688 -9.8225 0.4068 41 1 1.7900 -12.4531 -0.5864 42 1 5.4975 -8.8463 -1.0325 43 1 6.2457 -9.4282 0.4760 44 1 6.0048 -6.9156 0.3835 45 1 5.1513 -7.6569 1.7589 46 1 1.6386 -5.1423 0.6439 47 1 2.3535 -5.2950 -0.9893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051992030.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:19 Heat of formation + Delta-G solvation = 35.124428 kcal Electronic energy + Delta-G solvation = -29116.267725 eV Core-core repulsion = 25109.055763 eV Total energy + Delta-G solvation = -4007.211963 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.78327 -40.08368 -38.44048 -36.76164 -35.20085 -34.09524 -32.74772 -31.59669 -30.70601 -29.71314 -28.76294 -27.62241 -25.99420 -24.44699 -23.22191 -22.90430 -22.29917 -21.75306 -20.32373 -19.80146 -19.12109 -17.88163 -17.29504 -17.01441 -16.62903 -16.16992 -15.55322 -15.09191 -14.83780 -14.60242 -14.35269 -14.07279 -13.84475 -13.74890 -13.45443 -13.39058 -13.32963 -13.06644 -12.82613 -12.72081 -12.60142 -12.27834 -11.71510 -11.69750 -11.41775 -11.19625 -11.00459 -10.92114 -10.79410 -10.70854 -10.43603 -10.29417 -10.22190 -10.00940 -9.72306 -9.57216 -9.30513 -8.65529 -8.48819 -7.86757 -6.60708 -5.75663 -3.20523 0.77730 1.74012 2.19676 2.78271 3.10271 3.39584 3.45184 3.46003 3.67264 4.24697 4.28599 4.33156 4.51617 4.70169 4.72482 4.78844 5.05538 5.12606 5.15997 5.32335 5.37642 5.43106 5.46774 5.50815 5.61312 5.64793 5.75646 5.82723 5.86673 5.91529 5.95669 6.02453 6.11582 6.18164 6.21605 6.33232 6.36337 6.55013 6.71855 6.94910 7.08587 7.26085 7.38101 7.59430 7.66795 7.72724 7.83100 7.97310 8.47676 9.24152 9.86381 10.46075 11.32956 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.029138 B = 0.002275 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.711390 B =12307.133911 C =13030.141500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.043 3.957 3 O -0.201 6.201 4 C 0.170 3.830 5 N -0.458 5.458 6 C -0.073 4.073 7 C 0.613 3.387 8 O -0.536 6.536 9 N -0.601 5.601 10 C 0.117 3.883 11 C -0.126 4.126 12 C 0.069 3.931 13 H 0.050 0.950 14 N -0.520 5.520 15 C 0.032 3.968 16 C 0.180 3.820 17 N -0.595 5.595 18 C -0.253 4.253 19 H 0.064 0.936 20 C 0.003 3.997 21 N -0.904 5.904 22 Si 0.904 3.096 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.149 3.851 27 C 0.045 3.955 28 C 0.117 3.883 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.255 0.745 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.026 0.974 38 H 0.062 0.938 39 H 0.027 0.973 40 H 0.088 0.912 41 H 0.255 0.745 42 H 0.025 0.975 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.027 0.973 46 H 0.078 0.922 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.828 26.914 0.913 26.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.014 4.014 3 O -0.087 6.087 4 C -0.058 4.058 5 N -0.187 5.187 6 C -0.192 4.192 7 C 0.401 3.599 8 O -0.414 6.414 9 N -0.333 5.333 10 C -0.006 4.006 11 C -0.165 4.165 12 C -0.041 4.041 13 H 0.068 0.932 14 N -0.246 5.246 15 C -0.097 4.097 16 C 0.054 3.946 17 N -0.319 5.319 18 C -0.383 4.383 19 H 0.081 0.919 20 C -0.196 4.196 21 N -0.548 5.548 22 Si 0.734 3.266 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.022 3.978 27 C -0.084 4.084 28 C -0.005 4.005 29 H 0.097 0.903 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.270 0.730 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.044 0.956 38 H 0.081 0.919 39 H 0.045 0.955 40 H 0.106 0.894 41 H 0.065 0.935 42 H 0.043 0.957 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.046 0.954 46 H 0.096 0.904 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.567 26.301 0.342 26.349 hybrid contribution -0.293 -0.270 1.385 1.441 sum 1.274 26.031 1.726 26.119 Atomic orbital electron populations 1.20474 0.82462 1.03865 1.05719 1.23751 0.95238 0.83309 0.99065 1.84381 1.18644 1.36233 1.69443 1.28054 0.85232 0.91354 1.01179 1.70870 1.21677 1.09845 1.16294 1.21410 0.88850 0.95343 1.13631 1.16278 0.84568 0.81982 0.77066 1.90819 1.15765 1.83075 1.51717 1.48145 1.07329 1.06383 1.71468 1.22057 0.78695 0.97158 1.02659 1.22769 0.97656 0.93001 1.03031 1.22737 0.94281 0.90198 0.96845 0.93205 1.62022 1.03569 0.99380 1.59605 1.22963 0.91541 0.97366 0.97804 1.20850 0.89018 0.87910 0.96862 1.44079 0.99889 1.14695 1.73199 1.19130 1.10140 0.87377 1.21637 0.91852 1.25111 0.99979 0.97516 0.96979 1.69979 1.20817 1.35187 1.28867 0.86350 0.77259 0.83133 0.79859 1.21102 1.21601 1.20889 1.20972 0.90913 0.88894 0.96977 1.22630 0.90514 0.97900 0.97355 1.22282 0.97905 0.77865 1.02420 0.90267 0.88137 0.88159 0.72985 0.90790 0.90969 0.90278 0.89366 0.95605 0.91936 0.95497 0.89371 0.93532 0.95670 0.92648 0.91800 0.95445 0.90394 0.89805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 9.13 36.01 0.33 -0.19 16 2 C 0.04 0.42 7.44 -35.08 -0.26 0.16 16 3 O -0.20 -1.65 10.73 6.52 0.07 -1.58 16 4 C 0.17 1.16 13.19 51.96 0.69 1.84 16 5 N -0.46 -4.68 8.84 -11.48 -0.10 -4.78 16 6 C -0.07 -0.87 6.83 -83.01 -0.57 -1.43 16 7 C 0.61 8.78 7.85 -12.52 -0.10 8.68 16 8 O -0.54 -8.72 15.86 5.27 0.08 -8.63 16 9 N -0.60 -8.22 3.33 -171.76 -0.57 -8.79 16 10 C 0.12 1.34 5.53 -3.06 -0.02 1.33 16 11 C -0.13 -1.47 5.34 -24.89 -0.13 -1.61 16 12 C 0.07 0.99 2.72 -65.55 -0.18 0.81 16 13 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 14 N -0.52 -9.02 4.53 -223.76 -1.01 -10.04 16 15 C 0.03 0.63 5.48 -3.70 -0.02 0.61 16 16 C 0.18 4.35 5.38 -3.60 -0.02 4.33 16 17 N -0.60 -15.11 3.03 -172.02 -0.52 -15.63 16 18 C -0.25 -6.99 9.63 -15.06 -0.14 -7.14 16 19 H 0.06 1.71 7.86 -52.49 -0.41 1.30 16 20 C 0.00 0.08 5.01 -17.43 -0.09 -0.01 16 21 N -0.90 -26.41 11.11 55.49 0.62 -25.79 16 22 Si 0.90 21.82 29.57 -169.99 -5.03 16.79 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 C 0.15 3.15 6.69 -3.60 -0.02 3.12 16 27 C 0.05 0.79 5.48 -3.70 -0.02 0.77 16 28 C 0.12 1.71 5.31 -2.52 -0.01 1.69 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.10 0.79 8.08 -51.93 -0.42 0.37 16 31 H 0.10 0.78 8.07 -51.93 -0.42 0.37 16 32 H 0.25 0.36 8.06 -52.49 -0.42 -0.06 16 33 H 0.07 0.83 7.76 -51.93 -0.40 0.42 16 34 H 0.07 0.80 7.62 -51.93 -0.40 0.41 16 35 H 0.08 0.81 7.94 -51.93 -0.41 0.40 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 1.13 6.79 -51.93 -0.35 0.77 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 2.37 6.19 -51.93 -0.32 2.05 16 41 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 1.12 7.96 -51.93 -0.41 0.71 16 44 H 0.06 0.94 6.87 -51.93 -0.36 0.58 16 45 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 1.19 7.74 -51.93 -0.40 0.79 16 47 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 LS Contribution 373.71 15.07 5.63 5.63 Total: -1.00 -33.20 373.71 -8.65 -41.85 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -7.25 Total: -2.00 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: -0.57 Total: 12.98 kcal Atomic # 7 Polarization: -63.44 SS G_CDS: -1.59 Total: -65.03 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.15 Total: -10.21 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.20 -8.65 -41.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051992030.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.972 kcal (2) G-P(sol) polarization free energy of solvation -33.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds