Wall clock time and date at job start Tue Mar 31 2020 18:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34258 * 126.53239 * 2 1 4 4 C 1.34046 * 108.23050 * 179.97438 * 3 2 1 5 5 N 1.29932 * 109.24579 * 0.02562 * 4 3 2 6 6 C 1.36072 * 108.47436 * 359.73039 * 5 4 3 7 7 C 1.47427 * 126.45012 * 180.30850 * 6 5 4 8 8 O 1.21604 * 119.99951 * 180.14668 * 7 6 5 9 9 N 1.34779 * 119.99797 * 0.13859 * 7 6 5 10 10 C 1.47028 * 125.64720 * 359.69349 * 9 7 6 11 11 C 1.54331 * 107.26350 * 178.84775 * 10 9 7 12 12 C 1.55160 * 103.02395 * 338.14232 * 11 10 9 13 13 H 1.08995 * 111.03907 * 277.22219 * 12 11 10 14 14 N 1.46898 * 111.00551 * 153.37418 * 12 11 10 15 15 C 1.46900 * 110.99852 * 186.40580 * 14 12 11 16 16 C 1.53245 * 109.33852 * 172.75429 * 15 14 12 17 17 N 1.47072 * 108.52198 * 53.82720 * 16 15 14 18 18 C 1.36936 * 120.88206 * 128.84005 * 17 16 15 19 19 H 1.07997 * 120.00316 * 209.18706 * 18 17 16 20 20 C 1.38820 * 119.99885 * 29.18322 * 18 17 16 21 21 N 1.31614 * 119.99727 * 13.33062 * 20 18 17 22 22 Si 1.86801 * 120.00062 * 193.33280 * 20 18 17 23 23 H 1.48507 * 109.47043 * 60.00208 * 22 20 18 24 24 H 1.48502 * 109.47008 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47136 * 299.99960 * 22 20 18 26 26 C 1.47079 * 118.24316 * 308.81633 * 17 16 15 27 27 C 1.46907 * 110.99662 * 62.11137 * 14 12 11 28 28 C 1.47421 * 125.64881 * 180.02562 * 9 7 6 29 29 H 1.08998 * 109.46745 * 0.02857 * 1 2 3 30 30 H 1.08997 * 109.46912 * 120.01992 * 1 2 3 31 31 H 1.09000 * 109.47247 * 240.02535 * 1 2 3 32 32 H 1.07999 * 125.37442 * 179.97438 * 4 3 2 33 33 H 1.08994 * 109.88259 * 298.39418 * 10 9 7 34 34 H 1.09005 * 109.88041 * 59.56100 * 10 9 7 35 35 H 1.08997 * 110.85489 * 219.67384 * 11 10 9 36 36 H 1.09007 * 110.66826 * 96.52349 * 11 10 9 37 37 H 1.08996 * 109.49322 * 292.70815 * 15 14 12 38 38 H 1.08993 * 109.49409 * 52.79306 * 15 14 12 39 39 H 1.09005 * 109.62581 * 294.11786 * 16 15 14 40 40 H 1.08994 * 109.78754 * 173.63826 * 16 15 14 41 41 H 0.96998 * 120.00013 * 180.02562 * 21 20 18 42 42 H 1.08996 * 109.62944 * 291.47604 * 26 17 16 43 43 H 1.08999 * 109.79362 * 170.98763 * 26 17 16 44 44 H 1.08996 * 109.48780 * 307.20981 * 27 14 12 45 45 H 1.08996 * 109.49556 * 67.28985 * 27 14 12 46 46 H 1.08999 * 110.36423 * 322.93716 * 28 9 7 47 47 H 1.09008 * 110.36602 * 85.14138 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3062 1.0788 0.0000 4 6 3.5789 0.6578 0.0006 5 7 3.6003 -0.6413 0.0004 6 6 2.3170 -1.0937 0.0057 7 6 1.8852 -2.5033 0.0138 8 8 0.7001 -2.7762 0.0154 9 7 2.8039 -3.4894 0.0194 10 6 4.2621 -3.3021 0.0117 11 6 4.9044 -4.7048 0.0519 12 6 3.7749 -5.5897 0.6425 13 1 3.7570 -5.5267 1.7305 14 7 3.9128 -6.9839 0.2007 15 6 2.7631 -7.7893 0.6335 16 6 2.8542 -9.1833 0.0035 17 7 4.1705 -9.7558 0.3240 18 6 4.2789 -11.0080 0.8674 19 1 5.1107 -11.2460 1.5138 20 6 3.3196 -11.9716 0.5875 21 7 2.4605 -11.7800 -0.3910 22 14 3.2481 -13.5400 1.5997 23 1 3.0086 -13.1988 3.0250 24 1 2.1424 -14.3987 1.1043 25 1 4.5358 -14.2689 1.4747 26 6 5.3674 -8.9479 0.0449 27 6 5.1774 -7.5632 0.6733 28 6 2.5130 -4.9346 0.0271 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5141 -0.8898 31 1 -0.3634 -0.5134 0.8902 32 1 4.4490 1.2976 0.0003 33 1 4.5640 -2.7798 -0.8961 34 1 4.5671 -2.7315 0.8890 35 1 5.7797 -4.7124 0.7014 36 1 5.1684 -5.0360 -0.9525 37 1 2.7707 -7.8800 1.7197 38 1 1.8397 -7.3058 0.3149 39 1 2.7427 -9.1044 -1.0779 40 1 2.0688 -9.8225 0.4068 41 1 1.7900 -12.4531 -0.5864 42 1 5.4975 -8.8463 -1.0325 43 1 6.2457 -9.4282 0.4760 44 1 6.0048 -6.9156 0.3835 45 1 5.1513 -7.6569 1.7589 46 1 1.6386 -5.1423 0.6439 47 1 2.3535 -5.2950 -0.9893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051992030.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:19 Heat of formation + Delta-G solvation = 10.602914 kcal Electronic energy + Delta-G solvation = -29117.331058 eV Core-core repulsion = 25109.055763 eV Total energy + Delta-G solvation = -4008.275295 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.44248 -41.19392 -39.79946 -38.14408 -36.03670 -35.65924 -33.40838 -33.35896 -32.11533 -31.30769 -29.94447 -28.56020 -27.55284 -25.55560 -24.56497 -24.46961 -23.35614 -22.70410 -21.57083 -20.81208 -20.68962 -18.84733 -18.76878 -17.97847 -17.64247 -17.34178 -16.80595 -16.48181 -16.03988 -15.69522 -15.59731 -15.47113 -15.28714 -15.17774 -14.89658 -14.56560 -14.53950 -14.05860 -13.95882 -13.82158 -13.62203 -13.38424 -13.15085 -13.07914 -12.67147 -12.59251 -12.50888 -12.43070 -12.25943 -12.02862 -11.89473 -11.84199 -11.67993 -11.44501 -11.35533 -11.27526 -10.58452 -10.09095 -9.66491 -9.32845 -8.64423 -7.86768 -5.35202 0.01615 1.06031 1.46412 1.48811 1.52627 1.55603 1.84000 2.15252 2.50650 2.90078 3.05487 3.29371 3.39234 3.62519 3.66738 3.70553 3.76702 4.05283 4.20046 4.22324 4.31888 4.34926 4.37448 4.39561 4.53818 4.55954 4.60381 4.64029 4.70444 4.83655 4.86912 4.88407 4.91255 4.95118 5.06816 5.07524 5.11406 5.20707 5.22585 5.29628 5.38447 5.61625 5.69100 6.12512 6.22250 6.31221 6.39305 6.47750 6.93139 7.14225 7.84280 8.39418 9.19723 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.029138 B = 0.002275 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.711390 B =12307.133911 C =13030.141500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.046 3.954 3 O -0.198 6.198 4 C 0.196 3.804 5 N -0.486 5.486 6 C -0.103 4.103 7 C 0.605 3.395 8 O -0.568 6.568 9 N -0.605 5.605 10 C 0.126 3.874 11 C -0.115 4.115 12 C 0.074 3.926 13 H 0.052 0.948 14 N -0.526 5.526 15 C 0.050 3.950 16 C 0.189 3.811 17 N -0.615 5.615 18 C -0.264 4.264 19 H 0.068 0.932 20 C -0.052 4.052 21 N -0.937 5.937 22 Si 0.970 3.030 23 H -0.279 1.279 24 H -0.295 1.295 25 H -0.273 1.273 26 C 0.144 3.856 27 C 0.057 3.943 28 C 0.121 3.879 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.305 0.695 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.019 0.981 38 H 0.074 0.926 39 H -0.002 1.002 40 H 0.055 0.945 41 H 0.250 0.750 42 H 0.017 0.983 43 H 0.063 0.937 44 H 0.103 0.897 45 H 0.024 0.976 46 H 0.064 0.936 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.870 29.610 1.806 29.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.011 4.011 3 O -0.085 6.085 4 C -0.033 4.033 5 N -0.215 5.215 6 C -0.221 4.221 7 C 0.395 3.605 8 O -0.448 6.448 9 N -0.337 5.337 10 C 0.003 3.997 11 C -0.153 4.153 12 C -0.035 4.035 13 H 0.070 0.930 14 N -0.251 5.251 15 C -0.079 4.079 16 C 0.063 3.937 17 N -0.339 5.339 18 C -0.394 4.394 19 H 0.086 0.914 20 C -0.247 4.247 21 N -0.583 5.583 22 Si 0.798 3.202 23 H -0.205 1.205 24 H -0.221 1.221 25 H -0.199 1.199 26 C 0.018 3.982 27 C -0.071 4.071 28 C -0.002 4.002 29 H 0.125 0.875 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.320 0.680 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.122 0.878 36 H 0.105 0.895 37 H 0.037 0.963 38 H 0.092 0.908 39 H 0.017 0.983 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.035 0.965 43 H 0.081 0.919 44 H 0.121 0.879 45 H 0.042 0.958 46 H 0.082 0.918 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.660 29.017 1.242 29.273 hybrid contribution -0.869 -0.992 1.060 1.692 sum 2.791 28.025 2.302 28.258 Atomic orbital electron populations 1.20519 0.81448 1.05464 1.05026 1.24008 0.96027 0.83206 0.97859 1.84426 1.19164 1.35503 1.69369 1.29232 0.85733 0.90920 0.97403 1.70811 1.20801 1.11554 1.18289 1.21173 0.90350 0.94368 1.16213 1.16713 0.84270 0.83145 0.76369 1.90785 1.17036 1.83832 1.53187 1.48233 1.08392 1.05719 1.71315 1.22091 0.77145 0.97085 1.03335 1.22766 0.97320 0.92011 1.03238 1.22705 0.95497 0.88356 0.96980 0.92994 1.61930 1.02681 1.00612 1.59897 1.22589 0.93353 0.95235 0.96751 1.20562 0.88106 0.89937 0.95133 1.44367 1.01394 1.14782 1.73354 1.19491 1.10080 0.88364 1.21485 0.91440 1.25901 0.99945 1.00750 0.98141 1.70155 1.21523 1.36064 1.30560 0.85303 0.77211 0.79329 0.78347 1.20473 1.22070 1.19907 1.21149 0.89612 0.90531 0.96890 1.22487 0.91633 0.96328 0.96687 1.22108 0.97745 0.78988 1.01371 0.87489 0.88809 0.88805 0.68000 0.90210 0.90116 0.87800 0.89469 0.96254 0.90786 0.98348 0.92711 0.94092 0.96468 0.91904 0.87910 0.95800 0.91789 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 9.13 71.24 0.65 -0.32 16 2 C 0.05 0.85 7.44 25.19 0.19 1.03 16 3 O -0.20 -2.69 10.73 0.41 0.00 -2.68 16 4 C 0.20 1.95 13.19 130.52 1.72 3.67 16 5 N -0.49 -8.76 8.84 -305.15 -2.70 -11.46 16 6 C -0.10 -2.35 6.83 40.41 0.28 -2.08 16 7 C 0.61 17.40 7.85 86.66 0.68 18.08 16 8 O -0.57 -19.09 15.86 -4.04 -0.06 -19.15 16 9 N -0.60 -16.22 3.33 -815.58 -2.71 -18.93 16 10 C 0.13 2.60 5.53 86.73 0.48 3.08 16 11 C -0.12 -2.35 5.34 31.79 0.17 -2.18 16 12 C 0.07 2.00 2.72 46.32 0.13 2.13 16 13 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 14 N -0.53 -17.75 4.53 -861.85 -3.90 -21.66 16 15 C 0.05 1.99 5.48 86.39 0.47 2.47 16 16 C 0.19 9.52 5.38 86.35 0.46 9.99 16 17 N -0.61 -31.76 3.03 -698.13 -2.11 -33.87 16 18 C -0.26 -14.77 9.63 84.04 0.81 -13.96 16 19 H 0.07 3.64 7.86 -2.91 -0.02 3.62 16 20 C -0.05 -2.96 5.01 84.86 0.42 -2.54 16 21 N -0.94 -56.70 11.11 21.65 0.24 -56.46 16 22 Si 0.97 45.53 29.57 68.60 2.03 47.55 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 25 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 26 C 0.14 5.98 6.69 86.35 0.58 6.56 16 27 C 0.06 1.89 5.48 86.38 0.47 2.36 16 28 C 0.12 3.52 5.31 86.86 0.46 3.98 16 29 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 1.47 8.08 -2.39 -0.02 1.45 16 31 H 0.09 1.47 8.07 -2.39 -0.02 1.45 16 32 H 0.31 -0.76 8.06 -2.91 -0.02 -0.78 16 33 H 0.08 1.59 7.76 -2.39 -0.02 1.58 16 34 H 0.08 1.57 7.62 -2.38 -0.02 1.55 16 35 H 0.10 1.66 7.94 -2.39 -0.02 1.64 16 36 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.07 2.75 6.79 -2.39 -0.02 2.73 16 39 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 40 H 0.05 3.10 6.19 -2.39 -0.01 3.09 16 41 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 42 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.06 2.48 7.96 -2.39 -0.02 2.46 16 44 H 0.10 2.62 6.87 -2.39 -0.02 2.60 16 45 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.06 2.02 7.74 -2.39 -0.02 2.00 16 47 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 Total: -1.00 -75.12 373.71 -0.27 -75.39 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 0.97 Total: 9.00 kcal Atomic # 6 Polarization: 24.29 SS G_CDS: 7.98 Total: 32.26 kcal Atomic # 7 Polarization: -131.19 SS G_CDS: -11.19 Total: -142.37 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.06 Total: -21.84 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -75.12 -0.27 -75.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051992030.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.998 kcal (2) G-P(sol) polarization free energy of solvation -75.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds