Wall clock time and date at job start Tue Mar 31 2020 17:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32160 * 119.14232 * 2 1 4 4 C 1.32367 * 120.60950 * 179.97438 * 3 2 1 5 5 C 1.47499 * 120.51285 * 179.97438 * 4 3 2 6 6 O 1.21602 * 119.99847 * 180.02562 * 5 4 3 7 7 N 1.34774 * 120.00132 * 0.02562 * 5 4 3 8 8 C 1.46498 * 120.00360 * 179.97438 * 7 5 4 9 9 H 1.09005 * 109.16232 * 35.66324 * 8 7 5 10 10 C 1.50129 * 109.21080 * 154.99860 * 8 7 5 11 11 C 1.52521 * 105.41551 * 218.03357 * 10 8 7 12 12 C 1.46240 * 114.27680 * 270.59232 * 11 10 8 13 13 N 1.50170 * 107.58691 * 58.37370 * 12 11 10 14 14 C 1.36936 * 120.53513 * 109.60798 * 13 12 11 15 15 H 1.08007 * 119.99894 * 320.24180 * 14 13 12 16 16 C 1.38808 * 120.00119 * 140.24463 * 14 13 12 17 17 N 1.31621 * 120.00243 * 156.34542 * 16 14 13 18 18 Si 1.86797 * 120.00084 * 336.34765 * 16 14 13 19 19 H 1.48500 * 109.47193 * 95.56814 * 18 16 14 20 20 H 1.48506 * 109.47159 * 215.57025 * 18 16 14 21 21 H 1.48499 * 109.47202 * 335.56425 * 18 16 14 22 22 C 1.43406 * 118.94951 * 289.71346 * 13 12 11 23 23 C 1.54840 * 109.21154 * 276.32792 * 8 7 5 24 24 C 1.46675 * 118.97587 * 0.25776 * 4 3 2 25 25 O 1.21860 * 120.78097 * 179.72471 * 24 4 3 26 26 N 1.35150 * 118.43470 * 359.45880 * 24 4 3 27 27 H 0.96999 * 120.37040 * 180.23847 * 26 24 4 28 28 C 1.34901 * 119.26150 * 0.55953 * 26 24 4 29 29 C 1.50702 * 119.50089 * 179.69929 * 28 26 24 30 30 H 1.09002 * 109.47401 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47101 * 120.00030 * 1 2 3 32 32 H 1.08999 * 109.47207 * 239.99506 * 1 2 3 33 33 H 0.97006 * 119.99624 * 0.02562 * 7 5 4 34 34 H 1.08994 * 110.24939 * 99.05937 * 10 8 7 35 35 H 1.09002 * 110.24910 * 337.00617 * 10 8 7 36 36 H 1.08997 * 108.52586 * 149.35103 * 11 10 8 37 37 H 1.09007 * 108.40543 * 31.74588 * 11 10 8 38 38 H 1.09002 * 109.84894 * 177.91592 * 12 11 10 39 39 H 1.08994 * 109.84646 * 298.83700 * 12 11 10 40 40 H 0.97003 * 120.00492 * 179.97438 * 17 16 14 41 41 H 1.09003 * 108.11554 * 329.72393 * 22 13 12 42 42 H 1.08994 * 107.96903 * 213.07465 * 22 13 12 43 43 H 1.09001 * 109.35460 * 320.99439 * 23 8 7 44 44 H 1.09002 * 109.35766 * 80.71448 * 23 8 7 45 45 H 1.08994 * 109.47335 * 269.98603 * 29 28 26 46 46 H 1.09008 * 109.46639 * 29.98247 * 29 28 26 47 47 H 1.09002 * 109.46879 * 149.98063 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1505 1.1543 0.0000 4 6 3.4738 1.1882 0.0005 5 6 4.1899 2.4777 -0.0001 6 8 5.4057 2.4979 -0.0001 7 7 3.4967 3.6335 -0.0006 8 6 4.2079 4.9143 -0.0006 9 1 5.1132 4.8208 -0.6005 10 6 3.3247 5.9698 -0.6003 11 6 4.2540 6.8572 -1.4219 12 6 4.8334 7.9740 -0.6765 13 7 5.5922 7.3993 0.4850 14 6 6.9606 7.4412 0.5112 15 1 7.5239 7.2601 -0.3924 16 6 7.6240 7.7163 1.6991 17 7 8.8671 7.3174 1.8664 18 14 6.7524 8.6527 3.0603 19 1 6.1752 7.6898 4.0324 20 1 7.7243 9.5349 3.7550 21 1 5.6650 9.4779 2.4757 22 6 4.8611 6.8036 1.5654 23 6 4.5956 5.2818 1.4528 24 6 4.2170 -0.0763 -0.0047 25 8 5.4355 -0.0835 -0.0094 26 7 3.5185 -1.2333 0.0014 27 1 3.9814 -2.0857 0.0017 28 6 2.1702 -1.1896 0.0005 29 6 1.3859 -2.4764 0.0004 30 1 -0.3634 1.0277 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 -0.3633 -0.5139 0.8899 33 1 2.5268 3.6173 -0.0002 34 1 2.8451 6.5520 0.1864 35 1 2.5735 5.5120 -1.2441 36 1 3.6931 7.2583 -2.2661 37 1 5.0657 6.2408 -1.8086 38 1 5.5107 8.5363 -1.3192 39 1 4.0403 8.6276 -0.3133 40 1 9.3308 7.5100 2.6964 41 1 3.8997 7.3112 1.6445 42 1 5.4151 6.9847 2.4864 43 1 3.7824 5.0061 2.1243 44 1 5.4972 4.7379 1.7347 45 1 1.1973 -2.7869 -1.0273 46 1 1.9567 -3.2498 0.5146 47 1 0.4366 -2.3234 0.5138 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052483499.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:26 Heat of formation + Delta-G solvation = 1.935703 kcal Electronic energy + Delta-G solvation = -29522.672728 eV Core-core repulsion = 25514.021594 eV Total energy + Delta-G solvation = -4008.651134 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.99684 -39.51250 -38.21152 -37.72700 -35.69571 -34.59967 -33.48377 -32.73113 -31.18144 -30.64427 -29.45490 -27.16849 -26.16610 -24.96221 -24.36468 -23.46501 -22.72623 -20.77391 -20.14508 -19.39525 -18.90313 -18.55031 -16.92249 -16.52718 -16.43149 -16.13858 -15.74012 -15.15543 -14.69269 -14.47310 -14.41332 -14.26185 -13.98746 -13.84895 -13.60885 -13.43241 -13.33954 -13.12190 -12.85281 -12.50095 -12.43903 -12.16875 -11.85067 -11.77245 -11.71984 -11.58094 -11.47000 -10.81646 -10.74577 -10.42829 -10.31383 -10.17487 -10.07464 -9.92020 -9.56539 -9.45352 -9.36786 -8.59934 -8.33142 -8.24017 -6.63073 -5.87201 -3.30121 -0.13337 1.39807 2.10355 2.68590 3.27863 3.42395 3.54888 3.60927 3.61413 3.65878 3.90918 4.00302 4.28771 4.64520 4.65759 4.80160 4.89070 5.00132 5.06377 5.15257 5.19221 5.28407 5.41146 5.46338 5.53514 5.61726 5.71248 5.94531 5.99509 6.00900 6.07303 6.10919 6.26745 6.34056 6.41998 6.49422 6.69443 6.75538 6.83307 6.90741 7.03628 7.04516 7.12462 7.21927 7.52018 7.88717 8.21720 8.50652 8.56387 9.14079 9.84180 10.28257 11.28190 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018656 B = 0.002954 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.535167 B = 9476.595176 C =10101.424873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.033 4.033 3 N -0.355 5.355 4 C 0.018 3.982 5 C 0.571 3.429 6 O -0.495 6.495 7 N -0.710 5.710 8 C 0.156 3.844 9 H 0.096 0.904 10 C -0.119 4.119 11 C -0.131 4.131 12 C 0.136 3.864 13 N -0.600 5.600 14 C -0.266 4.266 15 H 0.075 0.925 16 C 0.039 3.961 17 N -0.895 5.895 18 Si 0.876 3.124 19 H -0.287 1.287 20 H -0.302 1.302 21 H -0.270 1.270 22 C 0.153 3.847 23 C -0.149 4.149 24 C 0.493 3.507 25 O -0.476 6.476 26 N -0.588 5.588 27 H 0.420 0.580 28 C 0.151 3.849 29 C -0.130 4.130 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.400 0.600 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.031 0.969 40 H 0.262 0.738 41 H 0.029 0.971 42 H 0.043 0.957 43 H 0.051 0.949 44 H 0.066 0.934 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.865 -19.425 -4.939 31.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.159 4.159 3 N -0.073 5.073 4 C -0.151 4.151 5 C 0.353 3.647 6 O -0.366 6.366 7 N -0.362 5.362 8 C 0.053 3.947 9 H 0.114 0.886 10 C -0.156 4.156 11 C -0.170 4.170 12 C 0.012 3.988 13 N -0.323 5.323 14 C -0.395 4.395 15 H 0.092 0.908 16 C -0.162 4.162 17 N -0.536 5.536 18 Si 0.706 3.294 19 H -0.214 1.214 20 H -0.231 1.231 21 H -0.194 1.194 22 C 0.025 3.975 23 C -0.191 4.191 24 C 0.284 3.716 25 O -0.346 6.346 26 N -0.224 5.224 27 H 0.261 0.739 28 C 0.035 3.965 29 C -0.188 4.188 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.235 0.765 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.049 0.951 40 H 0.072 0.928 41 H 0.048 0.952 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.116 0.884 46 H 0.100 0.900 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -22.529 -18.567 -4.861 29.595 hybrid contribution -0.229 -0.941 0.971 1.371 sum -22.757 -19.508 -3.890 30.225 Atomic orbital electron populations 1.20510 0.87016 1.04428 1.02135 1.20104 0.97830 0.85653 1.12301 1.67545 1.08476 1.29480 1.01767 1.24144 0.88771 0.94235 1.07963 1.17093 0.86772 0.82190 0.78653 1.90973 1.12151 1.86206 1.47278 1.46217 1.10265 1.05483 1.74249 1.21255 0.95489 0.79702 0.98278 0.88586 1.21299 0.97533 0.97146 0.99668 1.20875 0.98602 0.99278 0.98278 1.20446 0.94779 0.93342 0.90226 1.44195 1.03113 1.64183 1.20845 1.18698 0.79692 1.43863 0.97224 0.90774 1.25532 0.94922 0.97752 0.97945 1.69917 1.12352 1.45150 1.26152 0.86903 0.79217 0.80891 0.82364 1.21443 1.23053 1.19435 1.20625 0.94468 0.90215 0.92175 1.23229 1.00717 1.00590 0.94549 1.19145 0.88524 0.83983 0.79902 1.91100 1.11358 1.85130 1.47018 1.43766 1.06355 1.12029 1.60223 0.73944 1.21512 0.83573 0.98972 0.92447 1.21226 1.00922 0.91835 1.04820 0.89967 0.90927 0.90862 0.76465 0.90872 0.91867 0.93365 0.91600 0.91425 0.95113 0.92806 0.95244 0.93911 0.93070 0.91487 0.88435 0.89955 0.87995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 8.82 36.00 0.32 -0.04 16 2 C -0.03 -0.26 6.70 -83.19 -0.56 -0.82 16 3 N -0.36 -4.12 9.55 -4.85 -0.05 -4.16 16 4 C 0.02 0.27 6.96 -80.46 -0.56 -0.29 16 5 C 0.57 10.62 7.75 -12.49 -0.10 10.53 16 6 O -0.49 -11.79 15.17 -15.20 -0.23 -12.02 16 7 N -0.71 -11.44 4.96 -55.30 -0.27 -11.72 16 8 C 0.16 2.87 2.22 -68.39 -0.15 2.72 16 9 H 0.10 2.15 6.26 -51.93 -0.33 1.83 16 10 C -0.12 -1.82 5.34 -28.40 -0.15 -1.97 16 11 C -0.13 -2.21 5.20 -30.19 -0.16 -2.36 16 12 C 0.14 2.67 6.11 -5.20 -0.03 2.63 16 13 N -0.60 -14.57 2.14 -175.11 -0.37 -14.95 16 14 C -0.27 -7.72 9.92 -15.06 -0.15 -7.87 16 15 H 0.07 2.33 8.06 -52.48 -0.42 1.91 16 16 C 0.04 1.19 5.28 -17.43 -0.09 1.09 16 17 N -0.90 -28.64 13.97 55.49 0.78 -27.87 16 18 Si 0.88 23.08 25.27 -169.99 -4.29 18.79 16 19 H -0.29 -7.43 6.74 56.52 0.38 -7.04 16 20 H -0.30 -8.04 7.11 56.52 0.40 -7.64 16 21 H -0.27 -6.89 7.11 56.52 0.40 -6.48 16 22 C 0.15 3.47 4.22 -4.68 -0.02 3.45 16 23 C -0.15 -3.10 5.98 -24.76 -0.15 -3.25 16 24 C 0.49 7.25 7.93 -12.69 -0.10 7.15 16 25 O -0.48 -9.22 16.40 -15.43 -0.25 -9.47 16 26 N -0.59 -5.07 5.29 -9.45 -0.05 -5.12 16 27 H 0.42 2.38 8.81 -40.82 -0.36 2.02 16 28 C 0.15 0.93 6.78 -81.98 -0.56 0.38 16 29 C -0.13 -0.17 9.59 36.01 0.35 0.17 16 30 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 31 H 0.07 0.18 8.09 -51.93 -0.42 -0.24 16 32 H 0.07 0.18 7.36 -51.93 -0.38 -0.20 16 33 H 0.40 5.23 7.84 -40.82 -0.32 4.91 16 34 H 0.07 1.10 6.29 -51.93 -0.33 0.77 16 35 H 0.06 0.81 7.85 -51.93 -0.41 0.40 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.25 6.92 -51.93 -0.36 0.89 16 38 H 0.07 1.34 7.99 -51.93 -0.42 0.92 16 39 H 0.03 0.56 8.13 -51.93 -0.42 0.13 16 40 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 41 H 0.03 0.59 6.89 -51.93 -0.36 0.23 16 42 H 0.04 1.08 3.39 -51.93 -0.18 0.91 16 43 H 0.05 0.93 8.13 -51.93 -0.42 0.51 16 44 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 45 H 0.10 0.01 8.14 -51.93 -0.42 -0.41 16 46 H 0.08 0.02 8.14 -51.92 -0.42 -0.41 16 47 H 0.10 0.00 6.44 -51.93 -0.33 -0.33 16 LS Contribution 369.91 15.07 5.57 5.57 Total: -1.00 -39.65 369.91 -8.00 -47.65 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.72 Total: 1.76 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: -2.11 Total: 11.53 kcal Atomic # 7 Polarization: -63.84 SS G_CDS: 0.03 Total: -63.81 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.48 Total: -21.49 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.29 Total: 18.79 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -39.65 -8.00 -47.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052483499.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.586 kcal (2) G-P(sol) polarization free energy of solvation -39.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds