Wall clock time and date at job start Tue Mar 31 2020 17:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32160 * 119.14232 * 2 1 4 4 C 1.32367 * 120.60950 * 179.97438 * 3 2 1 5 5 C 1.47499 * 120.51285 * 179.97438 * 4 3 2 6 6 O 1.21602 * 119.99847 * 180.02562 * 5 4 3 7 7 N 1.34774 * 120.00132 * 0.02562 * 5 4 3 8 8 C 1.46498 * 120.00360 * 179.97438 * 7 5 4 9 9 H 1.09005 * 109.16232 * 35.66324 * 8 7 5 10 10 C 1.50129 * 109.21080 * 154.99860 * 8 7 5 11 11 C 1.52521 * 105.41551 * 218.03357 * 10 8 7 12 12 C 1.46240 * 114.27680 * 270.59232 * 11 10 8 13 13 N 1.50170 * 107.58691 * 58.37370 * 12 11 10 14 14 C 1.36936 * 120.53513 * 109.60798 * 13 12 11 15 15 H 1.08007 * 119.99894 * 320.24180 * 14 13 12 16 16 C 1.38808 * 120.00119 * 140.24463 * 14 13 12 17 17 N 1.31621 * 120.00243 * 156.34542 * 16 14 13 18 18 Si 1.86797 * 120.00084 * 336.34765 * 16 14 13 19 19 H 1.48500 * 109.47193 * 95.56814 * 18 16 14 20 20 H 1.48506 * 109.47159 * 215.57025 * 18 16 14 21 21 H 1.48499 * 109.47202 * 335.56425 * 18 16 14 22 22 C 1.43406 * 118.94951 * 289.71346 * 13 12 11 23 23 C 1.54840 * 109.21154 * 276.32792 * 8 7 5 24 24 C 1.46675 * 118.97587 * 0.25776 * 4 3 2 25 25 O 1.21860 * 120.78097 * 179.72471 * 24 4 3 26 26 N 1.35150 * 118.43470 * 359.45880 * 24 4 3 27 27 H 0.96999 * 120.37040 * 180.23847 * 26 24 4 28 28 C 1.34901 * 119.26150 * 0.55953 * 26 24 4 29 29 C 1.50702 * 119.50089 * 179.69929 * 28 26 24 30 30 H 1.09002 * 109.47401 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47101 * 120.00030 * 1 2 3 32 32 H 1.08999 * 109.47207 * 239.99506 * 1 2 3 33 33 H 0.97006 * 119.99624 * 0.02562 * 7 5 4 34 34 H 1.08994 * 110.24939 * 99.05937 * 10 8 7 35 35 H 1.09002 * 110.24910 * 337.00617 * 10 8 7 36 36 H 1.08997 * 108.52586 * 149.35103 * 11 10 8 37 37 H 1.09007 * 108.40543 * 31.74588 * 11 10 8 38 38 H 1.09002 * 109.84894 * 177.91592 * 12 11 10 39 39 H 1.08994 * 109.84646 * 298.83700 * 12 11 10 40 40 H 0.97003 * 120.00492 * 179.97438 * 17 16 14 41 41 H 1.09003 * 108.11554 * 329.72393 * 22 13 12 42 42 H 1.08994 * 107.96903 * 213.07465 * 22 13 12 43 43 H 1.09001 * 109.35460 * 320.99439 * 23 8 7 44 44 H 1.09002 * 109.35766 * 80.71448 * 23 8 7 45 45 H 1.08994 * 109.47335 * 269.98603 * 29 28 26 46 46 H 1.09008 * 109.46639 * 29.98247 * 29 28 26 47 47 H 1.09002 * 109.46879 * 149.98063 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1505 1.1543 0.0000 4 6 3.4738 1.1882 0.0005 5 6 4.1899 2.4777 -0.0001 6 8 5.4057 2.4979 -0.0001 7 7 3.4967 3.6335 -0.0006 8 6 4.2079 4.9143 -0.0006 9 1 5.1132 4.8208 -0.6005 10 6 3.3247 5.9698 -0.6003 11 6 4.2540 6.8572 -1.4219 12 6 4.8334 7.9740 -0.6765 13 7 5.5922 7.3993 0.4850 14 6 6.9606 7.4412 0.5112 15 1 7.5239 7.2601 -0.3924 16 6 7.6240 7.7163 1.6991 17 7 8.8671 7.3174 1.8664 18 14 6.7524 8.6527 3.0603 19 1 6.1752 7.6898 4.0324 20 1 7.7243 9.5349 3.7550 21 1 5.6650 9.4779 2.4757 22 6 4.8611 6.8036 1.5654 23 6 4.5956 5.2818 1.4528 24 6 4.2170 -0.0763 -0.0047 25 8 5.4355 -0.0835 -0.0094 26 7 3.5185 -1.2333 0.0014 27 1 3.9814 -2.0857 0.0017 28 6 2.1702 -1.1896 0.0005 29 6 1.3859 -2.4764 0.0004 30 1 -0.3634 1.0277 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 -0.3633 -0.5139 0.8899 33 1 2.5268 3.6173 -0.0002 34 1 2.8451 6.5520 0.1864 35 1 2.5735 5.5120 -1.2441 36 1 3.6931 7.2583 -2.2661 37 1 5.0657 6.2408 -1.8086 38 1 5.5107 8.5363 -1.3192 39 1 4.0403 8.6276 -0.3133 40 1 9.3308 7.5100 2.6964 41 1 3.8997 7.3112 1.6445 42 1 5.4151 6.9847 2.4864 43 1 3.7824 5.0061 2.1243 44 1 5.4972 4.7379 1.7347 45 1 1.1973 -2.7869 -1.0273 46 1 1.9567 -3.2498 0.5146 47 1 0.4366 -2.3234 0.5138 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052483499.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:25 Heat of formation + Delta-G solvation = -30.940253 kcal Electronic energy + Delta-G solvation = -29524.098336 eV Core-core repulsion = 25514.021594 eV Total energy + Delta-G solvation = -4010.076742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -42.90026 -40.94298 -39.45001 -39.09512 -36.61116 -36.29902 -34.59778 -34.10445 -33.11884 -32.22070 -30.00519 -28.28225 -27.67963 -25.87228 -25.59553 -25.19811 -24.00348 -22.11799 -21.52274 -21.12493 -19.88315 -19.48976 -18.49629 -18.01154 -17.62748 -17.39638 -17.09387 -16.78043 -16.23035 -16.02354 -15.49272 -15.32679 -15.07328 -14.96296 -14.88452 -14.72607 -14.19961 -14.08629 -13.87063 -13.83320 -13.73603 -13.57764 -13.31385 -12.81217 -12.71982 -12.67737 -12.43972 -12.43298 -12.35387 -12.21312 -12.07070 -11.78441 -11.61762 -11.48312 -11.31787 -11.27236 -10.60108 -10.53910 -10.06030 -9.10025 -8.66419 -8.20050 -5.60140 -0.98986 0.49026 1.22625 1.31478 1.38810 1.52913 1.55050 2.15457 2.43820 2.53907 2.92266 3.00517 3.01080 3.37503 3.40369 3.73786 3.85404 3.89155 4.02349 4.17965 4.37338 4.41477 4.54944 4.57375 4.65061 4.68331 4.72072 4.82527 4.90436 4.91938 4.96849 4.98106 5.06508 5.08912 5.16725 5.20580 5.23743 5.27023 5.38824 5.39657 5.53643 5.59532 5.63037 5.96274 6.18125 6.32263 6.54265 6.66741 7.03525 7.27419 7.65865 8.09692 9.00332 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018656 B = 0.002954 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.535167 B = 9476.595176 C =10101.424873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.049 4.049 3 N -0.333 5.333 4 C -0.063 4.063 5 C 0.567 3.433 6 O -0.571 6.571 7 N -0.693 5.693 8 C 0.165 3.835 9 H 0.042 0.958 10 C -0.105 4.105 11 C -0.128 4.128 12 C 0.134 3.866 13 N -0.613 5.613 14 C -0.257 4.257 15 H 0.025 0.975 16 C -0.027 4.027 17 N -0.953 5.953 18 Si 0.954 3.046 19 H -0.281 1.281 20 H -0.307 1.307 21 H -0.245 1.245 22 C 0.148 3.852 23 C -0.143 4.143 24 C 0.485 3.515 25 O -0.546 6.546 26 N -0.564 5.564 27 H 0.437 0.563 28 C 0.200 3.800 29 C -0.133 4.133 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.419 0.581 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.028 0.972 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.261 0.739 41 H 0.075 0.925 42 H 0.015 0.985 43 H 0.083 0.917 44 H 0.008 0.992 45 H 0.128 0.872 46 H 0.103 0.897 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.347 -21.305 -4.832 38.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.180 4.180 3 N -0.051 5.051 4 C -0.224 4.224 5 C 0.353 3.647 6 O -0.448 6.448 7 N -0.346 5.346 8 C 0.061 3.939 9 H 0.060 0.940 10 C -0.143 4.143 11 C -0.167 4.167 12 C 0.012 3.988 13 N -0.337 5.337 14 C -0.387 4.387 15 H 0.042 0.958 16 C -0.223 4.223 17 N -0.597 5.597 18 Si 0.782 3.218 19 H -0.208 1.208 20 H -0.235 1.235 21 H -0.168 1.168 22 C 0.020 3.980 23 C -0.184 4.184 24 C 0.280 3.720 25 O -0.424 6.424 26 N -0.199 5.199 27 H 0.281 0.719 28 C 0.080 3.920 29 C -0.190 4.190 30 H 0.093 0.907 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.257 0.743 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.109 0.891 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.033 0.967 43 H 0.101 0.899 44 H 0.027 0.973 45 H 0.146 0.854 46 H 0.122 0.878 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -30.091 -20.412 -4.780 36.674 hybrid contribution 1.790 -0.798 0.813 2.121 sum -28.301 -21.210 -3.967 35.589 Atomic orbital electron populations 1.20719 0.83323 1.04994 1.04874 1.21087 1.00001 0.85067 1.11811 1.67442 1.06707 1.31752 0.99161 1.23062 0.89753 0.92384 1.17164 1.17686 0.86187 0.84000 0.76820 1.90918 1.15459 1.87483 1.50969 1.45953 1.10833 1.04222 1.73609 1.20950 0.94950 0.82011 0.95966 0.94014 1.21291 0.97037 0.95599 1.00337 1.20773 0.98295 0.98123 0.99519 1.20673 0.94911 0.94652 0.88569 1.44356 1.01613 1.65057 1.22680 1.18547 0.82308 1.42320 0.95529 0.95774 1.26277 0.95795 0.98967 1.01223 1.70085 1.14827 1.47506 1.27310 0.85657 0.78233 0.79107 0.78838 1.20850 1.23520 1.16782 1.20742 0.95699 0.91211 0.90349 1.23137 0.99233 0.99125 0.96954 1.19184 0.87862 0.85390 0.79535 1.91052 1.14054 1.86182 1.51089 1.43730 1.07608 1.11340 1.57204 0.71932 1.22609 0.82296 1.01355 0.85721 1.21629 1.01314 0.88800 1.07209 0.90721 0.88035 0.88056 0.74278 0.88784 0.88156 0.89064 0.95344 0.92547 0.91379 0.92980 0.90649 0.96655 0.89896 0.97315 0.85417 0.87834 0.85076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.21 8.82 71.23 0.63 0.42 16 2 C -0.05 -0.58 6.70 42.03 0.28 -0.30 16 3 N -0.33 -7.25 9.55 -169.25 -1.62 -8.86 16 4 C -0.06 -2.01 6.96 43.71 0.30 -1.71 16 5 C 0.57 23.28 7.75 86.69 0.67 23.95 16 6 O -0.57 -31.07 15.17 15.54 0.24 -30.83 16 7 N -0.69 -23.28 4.96 -447.14 -2.22 -25.50 16 8 C 0.17 6.38 2.22 44.70 0.10 6.47 16 9 H 0.04 2.08 6.26 -2.38 -0.01 2.07 16 10 C -0.11 -2.97 5.34 29.51 0.16 -2.81 16 11 C -0.13 -4.16 5.20 28.35 0.15 -4.01 16 12 C 0.13 5.11 6.11 83.58 0.51 5.62 16 13 N -0.61 -30.40 2.14 -707.91 -1.51 -31.92 16 14 C -0.26 -15.93 9.92 84.03 0.83 -15.09 16 15 H 0.02 1.70 8.06 -2.91 -0.02 1.68 16 16 C -0.03 -1.69 5.28 84.86 0.45 -1.25 16 17 N -0.95 -65.49 13.97 21.65 0.30 -65.18 16 18 Si 0.95 49.49 25.27 68.60 1.73 51.22 16 19 H -0.28 -14.19 6.74 99.48 0.67 -13.52 16 20 H -0.31 -15.94 7.11 99.48 0.71 -15.24 16 21 H -0.24 -11.57 7.11 99.48 0.71 -10.86 16 22 C 0.15 6.63 4.22 87.60 0.37 7.00 16 23 C -0.14 -6.19 5.98 31.87 0.19 -6.00 16 24 C 0.49 15.18 7.93 86.39 0.68 15.87 16 25 O -0.55 -23.64 16.40 14.72 0.24 -23.40 16 26 N -0.56 -8.74 5.29 -301.75 -1.60 -10.34 16 27 H 0.44 4.00 8.81 -92.71 -0.82 3.18 16 28 C 0.20 1.56 6.78 41.61 0.28 1.84 16 29 C -0.13 0.62 9.59 71.24 0.68 1.31 16 30 H 0.07 0.39 8.10 -2.39 -0.02 0.37 16 31 H 0.10 -0.25 8.09 -2.39 -0.02 -0.27 16 32 H 0.10 -0.24 7.36 -2.39 -0.02 -0.25 16 33 H 0.42 10.54 7.84 -92.70 -0.73 9.81 16 34 H 0.09 2.35 6.29 -2.39 -0.02 2.33 16 35 H 0.10 2.15 7.85 -2.39 -0.02 2.13 16 36 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.03 1.13 6.92 -2.38 -0.02 1.12 16 38 H 0.06 2.24 7.99 -2.39 -0.02 2.22 16 39 H 0.07 2.16 8.13 -2.39 -0.02 2.14 16 40 H 0.26 16.93 8.31 -92.71 -0.77 16.16 16 41 H 0.08 2.72 6.89 -2.39 -0.02 2.71 16 42 H 0.02 0.78 3.39 -2.39 -0.01 0.77 16 43 H 0.08 3.00 8.13 -2.39 -0.02 2.98 16 44 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.13 -1.01 8.14 -2.39 -0.02 -1.03 16 46 H 0.10 -0.71 8.14 -2.38 -0.02 -0.73 16 47 H 0.13 -1.12 6.44 -2.39 -0.02 -1.14 16 Total: -1.00 -105.56 369.91 1.31 -104.25 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -0.55 Total: 9.25 kcal Atomic # 6 Polarization: 25.02 SS G_CDS: 6.29 Total: 31.31 kcal Atomic # 7 Polarization: -135.16 SS G_CDS: -6.64 Total: -141.80 kcal Atomic # 8 Polarization: -54.71 SS G_CDS: 0.48 Total: -54.23 kcal Atomic # 14 Polarization: 49.49 SS G_CDS: 1.73 Total: 51.22 kcal Total: -105.56 1.31 -104.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052483499.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.312 kcal (2) G-P(sol) polarization free energy of solvation -105.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds