Wall clock time and date at job start Tue Mar 31 2020 18:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34484 * 126.83369 * 2 1 4 4 N 1.36449 * 108.85690 * 180.25465 * 3 2 1 5 5 H 0.97000 * 124.85157 * 179.76848 * 4 3 2 6 6 C 1.34662 * 110.29924 * 359.75290 * 4 3 2 7 7 C 1.36774 * 108.39315 * 359.97438 * 6 4 3 8 8 C 1.47263 * 126.94064 * 179.97438 * 7 6 4 9 9 O 1.21627 * 119.99728 * 155.04527 * 8 7 6 10 10 N 1.34862 * 119.99835 * 335.04530 * 8 7 6 11 11 C 1.47753 * 121.45456 * 355.30244 * 10 8 7 12 12 C 1.52886 * 109.34339 * 96.37287 * 11 10 8 13 13 C 1.50762 * 109.61250 * 67.63929 * 12 11 10 14 14 O 1.21263 * 120.28136 * 66.20478 * 13 12 11 15 15 N 1.36023 * 118.92653 * 246.02111 * 13 12 11 16 16 C 1.47582 * 117.05957 * 170.65013 * 15 13 12 17 17 C 1.52971 * 108.90745 * 240.59827 * 16 15 13 18 18 N 1.47748 * 109.17479 * 63.92901 * 17 16 15 19 19 C 1.36999 * 121.47659 * 100.20199 * 18 17 16 20 20 H 1.07995 * 120.00098 * 334.46077 * 19 18 17 21 21 C 1.38816 * 119.99672 * 154.45436 * 19 18 17 22 22 N 1.31616 * 119.99976 * 354.33253 * 21 19 18 23 23 Si 1.86796 * 119.99893 * 174.33457 * 21 19 18 24 24 H 1.48504 * 109.47360 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47141 * 119.99903 * 23 21 19 26 26 H 1.48495 * 109.47012 * 240.00343 * 23 21 19 27 27 C 1.47777 * 116.76928 * 279.82289 * 18 17 16 28 28 C 1.47732 * 121.76443 * 175.91873 * 10 8 7 29 29 H 1.09001 * 109.46957 * 270.14837 * 1 2 3 30 30 H 1.09000 * 109.46983 * 30.14310 * 1 2 3 31 31 H 1.08994 * 109.47126 * 150.14952 * 1 2 3 32 32 H 1.08000 * 125.57618 * 359.96923 * 3 2 1 33 33 H 1.07997 * 125.80429 * 180.02562 * 6 4 3 34 34 H 1.09034 * 109.55366 * 216.54985 * 11 10 8 35 35 H 1.09118 * 109.43458 * 336.42529 * 11 10 8 36 36 H 1.09114 * 109.39754 * 187.43109 * 12 11 10 37 37 H 1.08937 * 109.74733 * 307.34084 * 12 11 10 38 38 H 0.97139 * 121.50079 * 351.64329 * 15 13 12 39 39 H 1.08864 * 110.03606 * 0.83358 * 16 15 13 40 40 H 1.09143 * 109.42008 * 121.06198 * 16 15 13 41 41 H 1.09065 * 109.50213 * 183.79363 * 17 16 15 42 42 H 1.09001 * 109.59352 * 303.88740 * 17 16 15 43 43 H 0.96996 * 120.00134 * 179.97438 * 22 21 19 44 44 H 1.08957 * 109.40054 * 6.80832 * 27 18 17 45 45 H 1.09169 * 109.24071 * 247.15696 * 27 18 17 46 46 H 1.09168 * 109.28854 * 60.64384 * 28 10 8 47 47 H 1.09016 * 109.35398 * 180.22501 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 -0.0057 5 1 4.3840 1.2413 -0.0101 6 6 3.6657 -0.6902 -0.0041 7 6 2.3864 -1.1741 0.0035 8 6 1.9750 -2.5880 0.0072 9 8 0.8905 -2.9046 0.4579 10 7 2.8006 -3.5318 -0.4891 11 6 4.0795 -3.1741 -1.1368 12 6 5.2133 -3.2910 -0.1178 13 6 5.4115 -4.7383 0.2549 14 8 5.8107 -5.5329 -0.5696 15 7 5.1392 -5.1331 1.5277 16 6 5.1415 -6.5844 1.7955 17 6 3.7537 -7.0000 2.2868 18 7 2.7687 -6.7701 1.2098 19 6 2.3213 -7.7953 0.4188 20 1 2.9362 -8.6706 0.2701 21 6 1.0774 -7.7091 -0.1914 22 7 0.2813 -6.6960 0.0775 23 14 0.5334 -9.0309 -1.3940 24 1 1.6027 -10.0533 -1.5229 25 1 -0.7088 -9.6734 -0.8948 26 1 0.2742 -8.4165 -2.7208 27 6 2.2852 -5.3847 1.0346 28 6 2.4664 -4.9694 -0.4246 29 1 -0.3633 0.0027 1.0277 30 1 -0.3633 0.8887 -0.5161 31 1 -0.3633 -0.8913 -0.5115 32 1 1.9869 2.1059 -0.0005 33 1 4.5665 -1.2860 -0.0072 34 1 4.2668 -3.8492 -1.9724 35 1 4.0253 -2.1486 -1.5057 36 1 6.1345 -2.9022 -0.5546 37 1 4.9672 -2.7161 0.7742 38 1 4.9375 -4.4894 2.2267 39 1 5.3872 -7.1310 0.8866 40 1 5.8812 -6.8102 2.5655 41 1 3.7630 -8.0580 2.5518 42 1 3.4834 -6.4087 3.1616 43 1 -0.5877 -6.6356 -0.3491 44 1 2.8511 -4.7189 1.6855 45 1 1.2274 -5.3366 1.3000 46 1 1.5397 -5.1492 -0.9731 47 1 3.2712 -5.5481 -0.8783 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071020544.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:02 Heat of formation + Delta-G solvation = 29.782852 kcal Electronic energy + Delta-G solvation = -31437.737827 eV Core-core repulsion = 27430.294236 eV Total energy + Delta-G solvation = -4007.443591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.21762 -39.57314 -38.25124 -36.00990 -35.32139 -33.77716 -32.32973 -31.37372 -30.72416 -30.09471 -28.65128 -26.65893 -26.40588 -24.47770 -23.64580 -22.66058 -21.36998 -20.36900 -19.79679 -19.56095 -18.47792 -17.63840 -16.78391 -16.57392 -16.02450 -15.66012 -14.90621 -14.87829 -14.70753 -14.35898 -14.16424 -13.88009 -13.50610 -13.38644 -12.98808 -12.97558 -12.73482 -12.66142 -12.54795 -12.23850 -12.11022 -11.98286 -11.91227 -11.54848 -11.25555 -11.10722 -10.99981 -10.77670 -10.55626 -10.35281 -9.93338 -9.84485 -9.48399 -9.35304 -9.04667 -8.72436 -8.48630 -8.32294 -8.20553 -7.92221 -6.55902 -5.50066 -3.11530 1.99254 2.50607 3.01439 3.19791 3.45745 3.53091 3.54682 3.65567 3.74074 3.95365 4.57931 4.77279 4.91205 4.97243 5.10984 5.21948 5.26647 5.44646 5.50693 5.52147 5.55194 5.56778 5.67464 5.92477 5.95945 6.01084 6.04231 6.11218 6.17097 6.18585 6.37991 6.49967 6.57912 6.71921 6.78923 6.89634 6.96560 6.99475 7.06347 7.25129 7.43904 7.61311 7.89803 7.97243 8.06848 8.29242 8.52334 8.67530 9.01387 9.33362 9.92600 10.49986 11.43204 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012396 B = 0.005030 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.220509 B = 5565.082684 C = 6955.631357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.113 4.113 3 C -0.031 4.031 4 N -0.555 5.555 5 H 0.414 0.586 6 C 0.017 3.983 7 C -0.210 4.210 8 C 0.580 3.420 9 O -0.517 6.517 10 N -0.615 5.615 11 C 0.109 3.891 12 C -0.170 4.170 13 C 0.528 3.472 14 O -0.540 6.540 15 N -0.721 5.721 16 C 0.084 3.916 17 C 0.128 3.872 18 N -0.594 5.594 19 C -0.247 4.247 20 H 0.066 0.934 21 C 0.003 3.997 22 N -0.890 5.890 23 Si 0.898 3.102 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.167 3.833 28 C 0.120 3.880 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.165 0.835 33 H 0.180 0.820 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.398 0.602 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.062 0.938 42 H 0.033 0.967 43 H 0.253 0.747 44 H 0.014 0.986 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.334 16.836 1.546 19.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.120 4.120 3 C -0.158 4.158 4 N -0.150 5.150 5 H 0.249 0.751 6 C -0.118 4.118 7 C -0.220 4.220 8 C 0.368 3.632 9 O -0.393 6.393 10 N -0.350 5.350 11 C -0.016 4.016 12 C -0.211 4.211 13 C 0.314 3.686 14 O -0.417 6.417 15 N -0.374 5.374 16 C -0.042 4.042 17 C 0.000 4.000 18 N -0.317 5.317 19 C -0.376 4.376 20 H 0.084 0.916 21 C -0.196 4.196 22 N -0.535 5.535 23 Si 0.729 3.271 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.042 3.958 28 C -0.002 4.002 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.182 0.818 33 H 0.197 0.803 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.233 0.767 39 H 0.110 0.890 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.051 0.949 43 H 0.063 0.937 44 H 0.032 0.968 45 H 0.104 0.896 46 H 0.100 0.900 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.865 16.169 1.146 18.976 hybrid contribution 0.140 -0.019 -0.397 0.422 sum 10.005 16.150 0.749 19.013 Atomic orbital electron populations 1.20120 0.89469 1.01982 1.02054 1.20570 0.95582 0.90512 1.05315 1.21500 0.82622 0.98948 1.12748 1.41493 1.08012 1.06707 1.58745 0.75059 1.22643 0.99322 0.83590 1.06202 1.20666 0.92484 0.93549 1.15326 1.17327 0.84105 0.83396 0.78399 1.90835 1.21008 1.81782 1.45653 1.48938 1.19097 1.08556 1.58447 1.21874 0.82774 1.02452 0.94532 1.22392 1.01307 0.95675 1.01754 1.20441 0.76097 0.89730 0.82307 1.90678 1.45816 1.55933 1.49296 1.46428 1.71666 1.08845 1.10440 1.22558 0.99245 0.80567 1.01844 1.21415 0.88534 0.99094 0.90949 1.44520 1.47724 1.04280 1.35164 1.19097 0.97864 0.97953 1.22716 0.91599 1.25097 0.95853 0.97744 1.00917 1.69937 1.09301 1.29692 1.44568 0.86265 0.78346 0.81654 0.80855 1.20486 1.21787 1.21807 1.21381 1.00410 0.82452 0.91541 1.22709 1.01589 0.74680 1.01192 0.91625 0.92689 0.90920 0.81786 0.80302 0.89667 0.89308 0.88144 0.89917 0.76728 0.88953 0.93224 0.91945 0.94897 0.93659 0.96803 0.89622 0.90037 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 9.93 36.01 0.36 -0.72 16 2 C -0.11 -1.57 6.35 -102.54 -0.65 -2.22 16 3 C -0.03 -0.31 11.82 -16.82 -0.20 -0.51 16 4 N -0.55 -4.61 5.90 -12.85 -0.08 -4.69 16 5 H 0.41 1.82 8.96 -40.82 -0.37 1.45 16 6 C 0.02 0.18 9.39 -16.84 -0.16 0.02 16 7 C -0.21 -3.20 5.80 -103.35 -0.60 -3.80 16 8 C 0.58 11.33 7.36 -12.55 -0.09 11.24 16 9 O -0.52 -12.42 15.30 5.25 0.08 -12.34 16 10 N -0.62 -11.51 2.61 -173.02 -0.45 -11.96 16 11 C 0.11 1.54 5.01 -3.41 -0.02 1.52 16 12 C -0.17 -2.05 4.74 -27.91 -0.13 -2.18 16 13 C 0.53 8.74 5.05 -10.39 -0.05 8.68 16 14 O -0.54 -11.13 15.91 5.57 0.09 -11.04 16 15 N -0.72 -11.21 3.67 -59.22 -0.22 -11.43 16 16 C 0.08 1.43 6.68 -3.46 -0.02 1.41 16 17 C 0.13 2.53 6.07 -3.37 -0.02 2.51 16 18 N -0.59 -14.54 2.73 -171.23 -0.47 -15.01 16 19 C -0.25 -6.72 9.21 -15.03 -0.14 -6.86 16 20 H 0.07 1.80 7.83 -52.49 -0.41 1.38 16 21 C 0.00 0.07 4.84 -17.43 -0.08 -0.01 16 22 N -0.89 -26.02 8.97 55.49 0.50 -25.52 16 23 Si 0.90 22.35 29.56 -169.99 -5.02 17.32 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 C 0.17 4.05 3.62 -3.44 -0.01 4.04 16 28 C 0.12 2.79 3.93 -3.47 -0.01 2.78 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 1.18 7.59 -51.93 -0.39 0.79 16 32 H 0.16 1.12 8.06 -52.49 -0.42 0.69 16 33 H 0.18 1.56 3.62 -52.49 -0.19 1.37 16 34 H 0.08 1.33 7.84 -51.91 -0.41 0.92 16 35 H 0.09 1.03 5.30 -51.86 -0.27 0.76 16 36 H 0.10 0.91 8.15 -51.86 -0.42 0.49 16 37 H 0.08 0.86 6.38 -51.96 -0.33 0.52 16 38 H 0.40 5.27 8.36 -40.77 -0.34 4.93 16 39 H 0.09 1.87 6.78 -52.01 -0.35 1.52 16 40 H 0.05 0.70 8.15 -51.85 -0.42 0.28 16 41 H 0.06 1.21 8.03 -51.89 -0.42 0.79 16 42 H 0.03 0.61 8.07 -51.93 -0.42 0.20 16 43 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.01 0.30 6.14 -51.95 -0.32 -0.01 16 45 H 0.09 2.51 6.03 -51.83 -0.31 2.19 16 46 H 0.08 2.24 6.53 -51.83 -0.34 1.90 16 47 H 0.07 1.74 6.15 -51.92 -0.32 1.43 16 LS Contribution 358.37 15.07 5.40 5.40 Total: -1.00 -35.95 358.37 -8.45 -44.40 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -6.44 Total: 8.97 kcal Atomic # 6 Polarization: 17.74 SS G_CDS: -1.84 Total: 15.91 kcal Atomic # 7 Polarization: -67.90 SS G_CDS: -0.71 Total: -68.61 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: 0.17 Total: -23.38 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.95 -8.45 -44.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071020544.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.180 kcal (2) G-P(sol) polarization free energy of solvation -35.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds