Wall clock time and date at job start Tue Mar 31 2020 18:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34484 * 126.83369 * 2 1 4 4 N 1.36449 * 108.85690 * 180.25465 * 3 2 1 5 5 H 0.97000 * 124.85157 * 179.76848 * 4 3 2 6 6 C 1.34662 * 110.29924 * 359.75290 * 4 3 2 7 7 C 1.36774 * 108.39315 * 359.97438 * 6 4 3 8 8 C 1.47263 * 126.94064 * 179.97438 * 7 6 4 9 9 O 1.21627 * 119.99728 * 155.04527 * 8 7 6 10 10 N 1.34862 * 119.99835 * 335.04530 * 8 7 6 11 11 C 1.47753 * 121.45456 * 355.30244 * 10 8 7 12 12 C 1.52886 * 109.34339 * 96.37287 * 11 10 8 13 13 C 1.50762 * 109.61250 * 67.63929 * 12 11 10 14 14 O 1.21263 * 120.28136 * 66.20478 * 13 12 11 15 15 N 1.36023 * 118.92653 * 246.02111 * 13 12 11 16 16 C 1.47582 * 117.05957 * 170.65013 * 15 13 12 17 17 C 1.52971 * 108.90745 * 240.59827 * 16 15 13 18 18 N 1.47748 * 109.17479 * 63.92901 * 17 16 15 19 19 C 1.36999 * 121.47659 * 100.20199 * 18 17 16 20 20 H 1.07995 * 120.00098 * 334.46077 * 19 18 17 21 21 C 1.38816 * 119.99672 * 154.45436 * 19 18 17 22 22 N 1.31616 * 119.99976 * 354.33253 * 21 19 18 23 23 Si 1.86796 * 119.99893 * 174.33457 * 21 19 18 24 24 H 1.48504 * 109.47360 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47141 * 119.99903 * 23 21 19 26 26 H 1.48495 * 109.47012 * 240.00343 * 23 21 19 27 27 C 1.47777 * 116.76928 * 279.82289 * 18 17 16 28 28 C 1.47732 * 121.76443 * 175.91873 * 10 8 7 29 29 H 1.09001 * 109.46957 * 270.14837 * 1 2 3 30 30 H 1.09000 * 109.46983 * 30.14310 * 1 2 3 31 31 H 1.08994 * 109.47126 * 150.14952 * 1 2 3 32 32 H 1.08000 * 125.57618 * 359.96923 * 3 2 1 33 33 H 1.07997 * 125.80429 * 180.02562 * 6 4 3 34 34 H 1.09034 * 109.55366 * 216.54985 * 11 10 8 35 35 H 1.09118 * 109.43458 * 336.42529 * 11 10 8 36 36 H 1.09114 * 109.39754 * 187.43109 * 12 11 10 37 37 H 1.08937 * 109.74733 * 307.34084 * 12 11 10 38 38 H 0.97139 * 121.50079 * 351.64329 * 15 13 12 39 39 H 1.08864 * 110.03606 * 0.83358 * 16 15 13 40 40 H 1.09143 * 109.42008 * 121.06198 * 16 15 13 41 41 H 1.09065 * 109.50213 * 183.79363 * 17 16 15 42 42 H 1.09001 * 109.59352 * 303.88740 * 17 16 15 43 43 H 0.96996 * 120.00134 * 179.97438 * 22 21 19 44 44 H 1.08957 * 109.40054 * 6.80832 * 27 18 17 45 45 H 1.09169 * 109.24071 * 247.15696 * 27 18 17 46 46 H 1.09168 * 109.28854 * 60.64384 * 28 10 8 47 47 H 1.09016 * 109.35398 * 180.22501 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 -0.0057 5 1 4.3840 1.2413 -0.0101 6 6 3.6657 -0.6902 -0.0041 7 6 2.3864 -1.1741 0.0035 8 6 1.9750 -2.5880 0.0072 9 8 0.8905 -2.9046 0.4579 10 7 2.8006 -3.5318 -0.4891 11 6 4.0795 -3.1741 -1.1368 12 6 5.2133 -3.2910 -0.1178 13 6 5.4115 -4.7383 0.2549 14 8 5.8107 -5.5329 -0.5696 15 7 5.1392 -5.1331 1.5277 16 6 5.1415 -6.5844 1.7955 17 6 3.7537 -7.0000 2.2868 18 7 2.7687 -6.7701 1.2098 19 6 2.3213 -7.7953 0.4188 20 1 2.9362 -8.6706 0.2701 21 6 1.0774 -7.7091 -0.1914 22 7 0.2813 -6.6960 0.0775 23 14 0.5334 -9.0309 -1.3940 24 1 1.6027 -10.0533 -1.5229 25 1 -0.7088 -9.6734 -0.8948 26 1 0.2742 -8.4165 -2.7208 27 6 2.2852 -5.3847 1.0346 28 6 2.4664 -4.9694 -0.4246 29 1 -0.3633 0.0027 1.0277 30 1 -0.3633 0.8887 -0.5161 31 1 -0.3633 -0.8913 -0.5115 32 1 1.9869 2.1059 -0.0005 33 1 4.5665 -1.2860 -0.0072 34 1 4.2668 -3.8492 -1.9724 35 1 4.0253 -2.1486 -1.5057 36 1 6.1345 -2.9022 -0.5546 37 1 4.9672 -2.7161 0.7742 38 1 4.9375 -4.4894 2.2267 39 1 5.3872 -7.1310 0.8866 40 1 5.8812 -6.8102 2.5655 41 1 3.7630 -8.0580 2.5518 42 1 3.4834 -6.4087 3.1616 43 1 -0.5877 -6.6356 -0.3491 44 1 2.8511 -4.7189 1.6855 45 1 1.2274 -5.3366 1.3000 46 1 1.5397 -5.1492 -0.9731 47 1 3.2712 -5.5481 -0.8783 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071020544.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:01 Heat of formation + Delta-G solvation = 2.285533 kcal Electronic energy + Delta-G solvation = -31438.930200 eV Core-core repulsion = 27430.294236 eV Total energy + Delta-G solvation = -4008.635964 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.18270 -40.90002 -39.71117 -37.79544 -36.78077 -35.36182 -33.28496 -33.19334 -32.23393 -31.42965 -30.05828 -28.41386 -27.38594 -26.17293 -25.10791 -24.15980 -22.56982 -22.05031 -21.32381 -20.59094 -19.49105 -18.83047 -18.52347 -18.01272 -17.45426 -17.17634 -16.50387 -16.35112 -16.24213 -15.75570 -15.30817 -15.22022 -15.15348 -14.89118 -14.41918 -14.23985 -14.15207 -13.95769 -13.85078 -13.57808 -13.41755 -13.28402 -13.18657 -13.08897 -12.89245 -12.69796 -12.50913 -12.36877 -12.21802 -12.07485 -11.89143 -11.78457 -11.49412 -10.75638 -10.64799 -10.61028 -9.91567 -9.64805 -9.38104 -9.07677 -8.58606 -7.63685 -5.27372 0.95069 1.41878 1.43923 1.53081 1.58169 1.73010 2.13185 2.50305 2.51101 2.56088 2.65586 3.38543 3.63542 3.75794 3.89305 4.06084 4.11397 4.25187 4.33686 4.38629 4.45301 4.51943 4.54107 4.62803 4.70064 4.71907 4.79619 4.82172 4.85011 4.93034 4.97730 5.00976 5.07306 5.18733 5.31919 5.36735 5.42752 5.62178 5.66454 5.79306 5.91119 6.03405 6.06708 6.36999 6.74756 6.78347 6.82980 7.19802 7.42877 7.54275 7.89141 8.41587 9.24754 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012396 B = 0.005030 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.220509 B = 5565.082684 C = 6955.631357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.158 4.158 3 C 0.002 3.998 4 N -0.529 5.529 5 H 0.440 0.560 6 C 0.050 3.950 7 C -0.258 4.258 8 C 0.575 3.425 9 O -0.581 6.581 10 N -0.617 5.617 11 C 0.106 3.894 12 C -0.159 4.159 13 C 0.517 3.483 14 O -0.586 6.586 15 N -0.717 5.717 16 C 0.097 3.903 17 C 0.123 3.877 18 N -0.611 5.611 19 C -0.246 4.246 20 H 0.065 0.935 21 C -0.048 4.048 22 N -0.915 5.915 23 Si 0.952 3.048 24 H -0.267 1.267 25 H -0.292 1.292 26 H -0.299 1.299 27 C 0.190 3.810 28 C 0.148 3.852 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.029 0.971 32 H 0.205 0.795 33 H 0.207 0.793 34 H 0.067 0.933 35 H 0.125 0.875 36 H 0.148 0.852 37 H 0.110 0.890 38 H 0.412 0.588 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.048 0.952 43 H 0.240 0.760 44 H 0.034 0.966 45 H 0.031 0.969 46 H 0.029 0.971 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.039 20.291 2.060 24.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.165 4.165 3 C -0.127 4.127 4 N -0.125 5.125 5 H 0.281 0.719 6 C -0.087 4.087 7 C -0.268 4.268 8 C 0.367 3.633 9 O -0.461 6.461 10 N -0.351 5.351 11 C -0.017 4.017 12 C -0.200 4.200 13 C 0.306 3.694 14 O -0.466 6.466 15 N -0.370 5.370 16 C -0.030 4.030 17 C -0.003 4.003 18 N -0.334 5.334 19 C -0.377 4.377 20 H 0.082 0.918 21 C -0.243 4.243 22 N -0.561 5.561 23 Si 0.782 3.218 24 H -0.192 1.192 25 H -0.219 1.219 26 H -0.227 1.227 27 C 0.065 3.935 28 C 0.024 3.976 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.048 0.952 32 H 0.222 0.778 33 H 0.223 0.777 34 H 0.086 0.914 35 H 0.143 0.857 36 H 0.166 0.834 37 H 0.128 0.872 38 H 0.250 0.750 39 H 0.078 0.922 40 H 0.109 0.891 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.050 0.950 44 H 0.052 0.948 45 H 0.049 0.951 46 H 0.048 0.952 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.661 19.680 1.690 24.016 hybrid contribution -0.957 -1.030 -0.525 1.501 sum 12.705 18.650 1.165 22.596 Atomic orbital electron populations 1.20013 0.90626 1.01278 1.01226 1.20741 0.95636 0.91593 1.08481 1.21922 0.82358 0.99480 1.08950 1.41512 1.08634 1.06121 1.56199 0.71888 1.22755 0.98113 0.84707 1.03140 1.20378 0.95174 0.91086 1.20188 1.18077 0.83095 0.85228 0.76949 1.90801 1.23765 1.83009 1.48482 1.48877 1.21026 1.06399 1.58756 1.22131 0.81145 1.03909 0.94515 1.22422 1.02258 0.92892 1.02408 1.21253 0.74988 0.91399 0.81808 1.90664 1.47783 1.57678 1.50438 1.46422 1.71129 1.08460 1.10970 1.22229 0.98071 0.81344 1.01314 1.21642 0.88811 0.99766 0.90090 1.44736 1.48683 1.03842 1.36188 1.19297 0.97493 0.98290 1.22576 0.91772 1.25717 0.96297 0.99453 1.02861 1.70195 1.09057 1.31258 1.45602 0.85403 0.78000 0.79779 0.78601 1.19175 1.21919 1.22703 1.20922 0.97419 0.82932 0.92266 1.21941 0.98177 0.77821 0.99634 0.92671 0.89654 0.95204 0.77819 0.77660 0.91415 0.85684 0.83444 0.87228 0.75050 0.92178 0.89068 0.91828 0.93395 0.95010 0.94791 0.95065 0.95243 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.07 9.93 71.24 0.71 -1.37 16 2 C -0.16 -4.12 6.35 -18.51 -0.12 -4.24 16 3 C 0.00 0.03 11.82 83.12 0.98 1.01 16 4 N -0.53 -5.54 5.90 -194.55 -1.15 -6.68 16 5 H 0.44 0.59 8.96 -92.71 -0.83 -0.24 16 6 C 0.05 0.84 9.39 83.92 0.79 1.63 16 7 C -0.26 -7.48 5.80 -19.04 -0.11 -7.59 16 8 C 0.57 23.23 7.36 86.60 0.64 23.86 16 9 O -0.58 -30.19 15.30 -4.12 -0.06 -30.25 16 10 N -0.62 -23.55 2.61 -819.50 -2.14 -25.69 16 11 C 0.11 2.80 5.01 86.10 0.43 3.23 16 12 C -0.16 -3.21 4.74 29.83 0.14 -3.06 16 13 C 0.52 16.11 5.05 87.48 0.44 16.55 16 14 O -0.59 -23.77 15.91 -2.98 -0.05 -23.82 16 15 N -0.72 -20.76 3.67 -458.95 -1.68 -22.44 16 16 C 0.10 3.17 6.68 86.16 0.58 3.74 16 17 C 0.12 4.81 6.07 86.13 0.52 5.34 16 18 N -0.61 -30.90 2.73 -695.64 -1.90 -32.80 16 19 C -0.25 -13.92 9.21 84.02 0.77 -13.14 16 20 H 0.06 3.59 7.83 -2.91 -0.02 3.57 16 21 C -0.05 -2.79 4.84 84.86 0.41 -2.38 16 22 N -0.91 -57.37 8.97 21.65 0.19 -57.18 16 23 Si 0.95 48.11 29.56 68.60 2.03 50.14 16 24 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 25 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 26 H -0.30 -15.40 7.11 99.48 0.71 -14.70 16 27 C 0.19 9.67 3.62 86.07 0.31 9.98 16 28 C 0.15 7.32 3.93 86.08 0.34 7.66 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.03 1.05 7.59 -2.39 -0.02 1.04 16 32 H 0.21 1.45 8.06 -2.91 -0.02 1.43 16 33 H 0.21 2.24 3.62 -2.91 -0.01 2.23 16 34 H 0.07 2.07 7.84 -2.37 -0.02 2.05 16 35 H 0.13 2.42 5.30 -2.32 -0.01 2.41 16 36 H 0.15 1.73 8.15 -2.33 -0.02 1.71 16 37 H 0.11 1.66 6.38 -2.42 -0.02 1.65 16 38 H 0.41 9.61 8.36 -92.60 -0.77 8.83 16 39 H 0.06 2.42 6.78 -2.46 -0.02 2.41 16 40 H 0.09 2.28 8.15 -2.31 -0.02 2.26 16 41 H 0.06 2.44 8.03 -2.35 -0.02 2.43 16 42 H 0.05 1.73 8.07 -2.39 -0.02 1.71 16 43 H 0.24 15.12 8.31 -92.71 -0.77 14.35 16 44 H 0.03 1.54 6.14 -2.41 -0.01 1.52 16 45 H 0.03 1.97 6.03 -2.30 -0.01 1.96 16 46 H 0.03 1.76 6.53 -2.30 -0.02 1.75 16 47 H 0.05 2.73 6.15 -2.38 -0.01 2.71 16 Total: -1.00 -90.79 358.37 1.51 -89.28 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -0.57 Total: 18.24 kcal Atomic # 6 Polarization: 34.38 SS G_CDS: 6.84 Total: 41.21 kcal Atomic # 7 Polarization: -138.12 SS G_CDS: -6.68 Total: -144.80 kcal Atomic # 8 Polarization: -53.96 SS G_CDS: -0.11 Total: -54.07 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Total: -90.79 1.51 -89.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071020544.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.567 kcal (2) G-P(sol) polarization free energy of solvation -90.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds