Wall clock time and date at job start Tue Mar 31 2020 19:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35569 * 125.82249 * 2 1 4 4 N 1.35399 * 107.16049 * 180.02562 * 3 2 1 5 5 H 0.96996 * 126.44452 * 179.97438 * 4 3 2 6 6 C 1.36674 * 107.12041 * 359.97438 * 4 3 2 7 7 C 1.47406 * 125.86110 * 179.97438 * 6 4 3 8 8 O 1.21605 * 120.00148 * 6.61059 * 7 6 4 9 9 N 1.34781 * 119.99995 * 186.60869 * 7 6 4 10 10 C 1.47156 * 121.06119 * 175.98637 * 9 7 6 11 11 C 1.52849 * 108.76735 * 231.08516 * 10 9 7 12 12 H 1.08995 * 109.37059 * 67.22613 * 11 10 9 13 13 C 1.53004 * 109.61967 * 187.30566 * 11 10 9 14 14 O 1.43108 * 109.30453 * 307.34184 * 11 10 9 15 15 C 1.42064 * 114.31960 * 61.04097 * 14 11 10 16 16 C 1.54511 * 110.34040 * 61.93333 * 15 14 11 17 17 C 1.55022 * 101.52287 * 83.94475 * 16 15 14 18 18 N 1.47480 * 104.90014 * 36.37461 * 17 16 15 19 19 C 1.36940 * 125.66130 * 155.95788 * 18 17 16 20 20 H 1.08004 * 119.99943 * 180.02562 * 19 18 17 21 21 C 1.38808 * 120.00083 * 0.02914 * 19 18 17 22 22 N 1.31621 * 119.99984 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00094 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47210 * 89.99688 * 23 21 19 25 25 H 1.48506 * 109.47011 * 209.99579 * 23 21 19 26 26 H 1.48495 * 109.47234 * 329.99491 * 23 21 19 27 27 C 1.47188 * 108.67646 * 335.98183 * 18 17 16 28 28 C 1.47308 * 121.05936 * 356.26607 * 9 7 6 29 29 N 1.31611 * 108.27353 * 0.23155 * 6 4 3 30 30 H 1.09000 * 109.46744 * 90.00630 * 1 2 3 31 31 H 1.09005 * 109.46939 * 210.00160 * 1 2 3 32 32 H 1.09000 * 109.47452 * 330.00286 * 1 2 3 33 33 H 1.08000 * 126.42033 * 0.03612 * 3 2 1 34 34 H 1.08998 * 109.62270 * 350.85802 * 10 9 7 35 35 H 1.09001 * 109.62635 * 111.42018 * 10 9 7 36 36 H 1.09004 * 109.46665 * 179.91277 * 13 11 10 37 37 H 1.08994 * 109.46824 * 299.91211 * 13 11 10 38 38 H 1.08995 * 109.46827 * 59.91576 * 13 11 10 39 39 H 1.09000 * 111.01527 * 202.00076 * 16 15 14 40 40 H 1.09001 * 111.01976 * 325.88492 * 16 15 14 41 41 H 1.08993 * 110.35425 * 155.23306 * 17 16 15 42 42 H 1.09003 * 110.34903 * 277.41612 * 17 16 15 43 43 H 0.96999 * 120.00287 * 180.02562 * 22 21 19 44 44 H 1.09004 * 109.90720 * 242.14295 * 27 18 17 45 45 H 1.08999 * 109.90950 * 120.87518 * 27 18 17 46 46 H 1.08995 * 109.68362 * 250.31875 * 28 9 7 47 47 H 1.09000 * 109.67837 * 10.86148 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3004 1.0992 0.0000 4 7 3.5832 0.6660 -0.0006 5 1 4.3788 1.2208 -0.0011 6 6 3.5465 -0.7003 -0.0003 7 6 4.7174 -1.5956 -0.0013 8 8 5.8360 -1.1339 0.1188 9 7 4.5484 -2.9261 -0.1353 10 6 5.7037 -3.8328 -0.2272 11 6 5.5263 -4.7331 -1.4496 12 1 5.5951 -4.1307 -2.3553 13 6 6.6201 -5.8028 -1.4630 14 8 4.2425 -5.3629 -1.3909 15 6 3.1465 -4.4591 -1.3996 16 6 3.1327 -3.6443 -2.7123 17 6 2.3956 -4.6142 -3.6711 18 7 1.3747 -5.2718 -2.8342 19 6 0.2135 -5.8377 -3.2886 20 1 -0.4724 -6.2964 -2.5917 21 6 -0.0821 -5.8218 -4.6447 22 7 0.7536 -5.2624 -5.4939 23 14 -1.6665 -6.5932 -5.2645 24 1 -2.7447 -5.5721 -5.2708 25 1 -1.4615 -7.1051 -6.6433 26 1 -2.0528 -7.7154 -4.3721 27 6 1.8109 -5.2183 -1.4294 28 6 3.2011 -3.5182 -0.2005 29 7 2.2861 -1.0792 -0.0047 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.9711 2.1278 0.0005 34 1 6.6188 -3.2501 -0.3329 35 1 5.7594 -4.4471 0.6715 36 1 6.4903 -6.4443 -2.3347 37 1 7.5975 -5.3224 -1.5076 38 1 6.5516 -6.4038 -0.5562 39 1 2.5745 -2.7160 -2.5904 40 1 4.1465 -3.4461 -3.0602 41 1 1.9221 -4.0596 -4.4811 42 1 3.0910 -5.3512 -4.0729 43 1 0.5469 -5.2510 -6.4416 44 1 1.9498 -6.2289 -1.0452 45 1 1.0697 -4.6892 -0.8305 46 1 3.0009 -4.0767 0.7139 47 1 2.4587 -2.7290 -0.3191 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071219724.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:56 Heat of formation + Delta-G solvation = 33.040635 kcal Electronic energy + Delta-G solvation = -30790.605719 eV Core-core repulsion = 26783.303396 eV Total energy + Delta-G solvation = -4007.302323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.51616 -40.35983 -38.64281 -36.19171 -34.89435 -33.35752 -33.05481 -31.60349 -31.11907 -29.18843 -28.34810 -27.72197 -26.29828 -25.54615 -23.76567 -23.05778 -21.72607 -20.62275 -20.27900 -19.92749 -19.07588 -18.04965 -16.96896 -16.71569 -16.42886 -16.02260 -15.70067 -14.91648 -14.74857 -14.63824 -14.30105 -14.11086 -13.94688 -13.44139 -13.29104 -13.19788 -12.90613 -12.74065 -12.53332 -12.36314 -12.23881 -12.15589 -11.96939 -11.60260 -11.47155 -10.97636 -10.89590 -10.81259 -10.57444 -10.44717 -10.31647 -10.21125 -10.03268 -9.91198 -9.55043 -9.45702 -9.33334 -8.66386 -8.57149 -8.27628 -6.75397 -5.57687 -2.98865 1.18679 2.32112 2.40486 3.22184 3.25340 3.44710 3.49443 3.51787 3.92910 4.01754 4.54563 4.60295 4.81029 4.88143 5.03449 5.10747 5.16014 5.20698 5.37787 5.46989 5.54843 5.55809 5.61577 5.65942 5.68341 5.72996 5.74638 5.87124 5.90891 5.96875 6.06129 6.15053 6.22397 6.30093 6.38053 6.60522 6.61932 6.70421 6.74996 6.80431 7.00430 7.22197 7.59035 7.62013 7.69286 7.77542 7.93203 7.97799 8.42349 9.28966 9.89671 10.55509 11.46363 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010549 B = 0.004612 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.601965 B = 6069.429321 C = 8097.115418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.005 3.995 3 C -0.026 4.026 4 N -0.523 5.523 5 H 0.429 0.571 6 C 0.155 3.845 7 C 0.607 3.393 8 O -0.552 6.552 9 N -0.581 5.581 10 C 0.085 3.915 11 C 0.070 3.930 12 H 0.065 0.935 13 C -0.140 4.140 14 O -0.356 6.356 15 C 0.097 3.903 16 C -0.164 4.164 17 C 0.161 3.839 18 N -0.600 5.600 19 C -0.217 4.217 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.923 5.923 23 Si 0.914 3.086 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.155 3.845 28 C 0.047 3.953 29 N -0.430 5.430 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.187 0.813 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.104 0.896 42 H 0.013 0.987 43 H 0.251 0.749 44 H 0.035 0.965 45 H 0.042 0.958 46 H 0.069 0.931 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.258 11.981 12.348 18.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.128 4.128 3 C -0.164 4.164 4 N -0.125 5.125 5 H 0.269 0.731 6 C -0.105 4.105 7 C 0.393 3.607 8 O -0.431 6.431 9 N -0.311 5.311 10 C -0.037 4.037 11 C 0.012 3.988 12 H 0.083 0.917 13 C -0.197 4.197 14 O -0.275 6.275 15 C 0.057 3.943 16 C -0.202 4.202 17 C 0.036 3.964 18 N -0.326 5.326 19 C -0.345 4.345 20 H 0.096 0.904 21 C -0.207 4.207 22 N -0.572 5.572 23 Si 0.745 3.255 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C 0.029 3.971 28 C -0.075 4.075 29 N -0.154 5.154 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.204 0.796 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.122 0.878 42 H 0.031 0.969 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.059 0.941 46 H 0.087 0.913 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 7.473 11.124 12.227 18.141 hybrid contribution -0.010 0.890 -0.376 0.966 sum 7.463 12.014 11.851 18.452 Atomic orbital electron populations 1.20120 0.86756 1.02987 1.03110 1.21082 0.97257 0.87946 1.06484 1.22712 0.82822 1.01029 1.09840 1.42818 1.09222 1.07324 1.53132 0.73118 1.22538 0.93627 0.82245 1.12129 1.16484 0.85468 0.81560 0.77160 1.90801 1.24185 1.75686 1.52383 1.47807 1.08995 1.04686 1.69649 1.22375 0.89345 0.92268 0.99757 1.22355 0.85595 0.94445 0.96453 0.91670 1.21683 0.96074 0.98446 1.03545 1.87898 1.12465 1.32821 1.94290 1.22290 0.88115 0.89887 0.94016 1.23475 1.00223 0.99612 0.96937 1.21856 0.89140 0.92369 0.93001 1.44481 1.20819 1.67355 0.99993 1.19076 0.94824 1.29110 0.91511 0.90388 1.24766 0.98736 1.01465 0.95783 1.69814 1.35952 1.49574 1.01879 0.86074 0.82723 0.78712 0.78016 1.21667 1.21779 1.20737 1.21038 0.89610 0.97228 0.89216 1.23711 0.84428 1.00897 0.98475 1.69664 0.99301 1.29462 1.16935 0.90628 0.90585 0.91188 0.79629 0.88417 0.90388 0.91109 0.91222 0.91732 0.91429 0.92526 0.87804 0.96942 0.93865 0.94745 0.94052 0.91269 0.81703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.42 36.01 0.38 -0.31 16 2 C 0.01 0.06 7.07 -83.00 -0.59 -0.52 16 3 C -0.03 -0.24 11.91 -16.93 -0.20 -0.44 16 4 N -0.52 -5.49 6.15 -10.78 -0.07 -5.55 16 5 H 0.43 3.43 8.96 -40.82 -0.37 3.07 16 6 C 0.16 2.19 7.74 -154.52 -1.20 0.99 16 7 C 0.61 9.41 7.71 -12.53 -0.10 9.31 16 8 O -0.55 -9.15 16.58 5.27 0.09 -9.06 16 9 N -0.58 -8.93 2.92 -174.17 -0.51 -9.44 16 10 C 0.08 1.17 5.87 -3.76 -0.02 1.15 16 11 C 0.07 1.05 3.16 -26.81 -0.08 0.97 16 12 H 0.07 1.05 6.13 -51.93 -0.32 0.73 16 13 C -0.14 -1.67 9.57 37.16 0.36 -1.32 16 14 O -0.36 -6.68 9.87 -35.23 -0.35 -7.03 16 15 C 0.10 1.86 0.83 -89.73 -0.07 1.78 16 16 C -0.16 -3.38 5.91 -24.87 -0.15 -3.53 16 17 C 0.16 4.11 5.89 -2.44 -0.01 4.10 16 18 N -0.60 -15.82 3.40 -170.23 -0.58 -16.40 16 19 C -0.22 -6.13 10.28 -15.06 -0.15 -6.28 16 20 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 21 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 22 N -0.92 -27.39 10.09 55.49 0.56 -26.83 16 23 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 C 0.16 3.41 6.61 -3.32 -0.02 3.39 16 28 C 0.05 0.77 5.00 -3.85 -0.02 0.75 16 29 N -0.43 -6.27 7.54 -7.50 -0.06 -6.33 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.19 0.93 8.06 -52.49 -0.42 0.50 16 34 H 0.10 1.28 7.10 -51.93 -0.37 0.91 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 1.41 7.86 -51.93 -0.41 1.00 16 40 H 0.06 1.11 5.98 -51.93 -0.31 0.80 16 41 H 0.10 2.95 5.88 -51.93 -0.31 2.64 16 42 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.03 0.78 8.06 -51.93 -0.42 0.36 16 45 H 0.04 0.87 7.79 -51.93 -0.40 0.46 16 46 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.17 2.80 3.68 -73.31 -0.27 2.53 16 LS Contribution 369.81 15.07 5.57 5.57 Total: -1.00 -34.12 369.81 -9.29 -43.41 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -6.94 Total: 4.81 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: -1.99 Total: 9.60 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: -0.65 Total: -64.56 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.26 Total: -16.09 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.12 -9.29 -43.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071219724.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.449 kcal (2) G-P(sol) polarization free energy of solvation -34.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds