Wall clock time and date at job start Tue Mar 31 2020 19:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35569 * 125.82249 * 2 1 4 4 N 1.35399 * 107.16049 * 180.02562 * 3 2 1 5 5 H 0.96996 * 126.44452 * 179.97438 * 4 3 2 6 6 C 1.36674 * 107.12041 * 359.97438 * 4 3 2 7 7 C 1.47406 * 125.86110 * 179.97438 * 6 4 3 8 8 O 1.21605 * 120.00148 * 6.61059 * 7 6 4 9 9 N 1.34781 * 119.99995 * 186.60869 * 7 6 4 10 10 C 1.47156 * 121.06119 * 175.98637 * 9 7 6 11 11 C 1.52849 * 108.76735 * 231.08516 * 10 9 7 12 12 H 1.08995 * 109.37059 * 67.22613 * 11 10 9 13 13 C 1.53004 * 109.61967 * 187.30566 * 11 10 9 14 14 O 1.43108 * 109.30453 * 307.34184 * 11 10 9 15 15 C 1.42064 * 114.31960 * 61.04097 * 14 11 10 16 16 C 1.54511 * 110.34040 * 61.93333 * 15 14 11 17 17 C 1.55022 * 101.52287 * 83.94475 * 16 15 14 18 18 N 1.47480 * 104.90014 * 36.37461 * 17 16 15 19 19 C 1.36940 * 125.66130 * 155.95788 * 18 17 16 20 20 H 1.08004 * 119.99943 * 180.02562 * 19 18 17 21 21 C 1.38808 * 120.00083 * 0.02914 * 19 18 17 22 22 N 1.31621 * 119.99984 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00094 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47210 * 89.99688 * 23 21 19 25 25 H 1.48506 * 109.47011 * 209.99579 * 23 21 19 26 26 H 1.48495 * 109.47234 * 329.99491 * 23 21 19 27 27 C 1.47188 * 108.67646 * 335.98183 * 18 17 16 28 28 C 1.47308 * 121.05936 * 356.26607 * 9 7 6 29 29 N 1.31611 * 108.27353 * 0.23155 * 6 4 3 30 30 H 1.09000 * 109.46744 * 90.00630 * 1 2 3 31 31 H 1.09005 * 109.46939 * 210.00160 * 1 2 3 32 32 H 1.09000 * 109.47452 * 330.00286 * 1 2 3 33 33 H 1.08000 * 126.42033 * 0.03612 * 3 2 1 34 34 H 1.08998 * 109.62270 * 350.85802 * 10 9 7 35 35 H 1.09001 * 109.62635 * 111.42018 * 10 9 7 36 36 H 1.09004 * 109.46665 * 179.91277 * 13 11 10 37 37 H 1.08994 * 109.46824 * 299.91211 * 13 11 10 38 38 H 1.08995 * 109.46827 * 59.91576 * 13 11 10 39 39 H 1.09000 * 111.01527 * 202.00076 * 16 15 14 40 40 H 1.09001 * 111.01976 * 325.88492 * 16 15 14 41 41 H 1.08993 * 110.35425 * 155.23306 * 17 16 15 42 42 H 1.09003 * 110.34903 * 277.41612 * 17 16 15 43 43 H 0.96999 * 120.00287 * 180.02562 * 22 21 19 44 44 H 1.09004 * 109.90720 * 242.14295 * 27 18 17 45 45 H 1.08999 * 109.90950 * 120.87518 * 27 18 17 46 46 H 1.08995 * 109.68362 * 250.31875 * 28 9 7 47 47 H 1.09000 * 109.67837 * 10.86148 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3004 1.0992 0.0000 4 7 3.5832 0.6660 -0.0006 5 1 4.3788 1.2208 -0.0011 6 6 3.5465 -0.7003 -0.0003 7 6 4.7174 -1.5956 -0.0013 8 8 5.8360 -1.1339 0.1188 9 7 4.5484 -2.9261 -0.1353 10 6 5.7037 -3.8328 -0.2272 11 6 5.5263 -4.7331 -1.4496 12 1 5.5951 -4.1307 -2.3553 13 6 6.6201 -5.8028 -1.4630 14 8 4.2425 -5.3629 -1.3909 15 6 3.1465 -4.4591 -1.3996 16 6 3.1327 -3.6443 -2.7123 17 6 2.3956 -4.6142 -3.6711 18 7 1.3747 -5.2718 -2.8342 19 6 0.2135 -5.8377 -3.2886 20 1 -0.4724 -6.2964 -2.5917 21 6 -0.0821 -5.8218 -4.6447 22 7 0.7536 -5.2624 -5.4939 23 14 -1.6665 -6.5932 -5.2645 24 1 -2.7447 -5.5721 -5.2708 25 1 -1.4615 -7.1051 -6.6433 26 1 -2.0528 -7.7154 -4.3721 27 6 1.8109 -5.2183 -1.4294 28 6 3.2011 -3.5182 -0.2005 29 7 2.2861 -1.0792 -0.0047 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.9711 2.1278 0.0005 34 1 6.6188 -3.2501 -0.3329 35 1 5.7594 -4.4471 0.6715 36 1 6.4903 -6.4443 -2.3347 37 1 7.5975 -5.3224 -1.5076 38 1 6.5516 -6.4038 -0.5562 39 1 2.5745 -2.7160 -2.5904 40 1 4.1465 -3.4461 -3.0602 41 1 1.9221 -4.0596 -4.4811 42 1 3.0910 -5.3512 -4.0729 43 1 0.5469 -5.2510 -6.4416 44 1 1.9498 -6.2289 -1.0452 45 1 1.0697 -4.6892 -0.8305 46 1 3.0009 -4.0767 0.7139 47 1 2.4587 -2.7290 -0.3191 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071219724.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:56 Heat of formation + Delta-G solvation = 10.112205 kcal Electronic energy + Delta-G solvation = -30791.599970 eV Core-core repulsion = 26783.303396 eV Total energy + Delta-G solvation = -4008.296574 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.41860 -41.68323 -39.96899 -37.88876 -36.12666 -34.77243 -34.22835 -33.10369 -32.20634 -31.03403 -29.96908 -28.65530 -27.50380 -27.07189 -25.49796 -24.13668 -23.10892 -21.97783 -21.42719 -21.30543 -20.45617 -19.16269 -18.95149 -17.84772 -17.70974 -17.09899 -16.96740 -16.77216 -16.16162 -15.88307 -15.67249 -15.49482 -15.02316 -14.90755 -14.68060 -14.43458 -14.14121 -14.06256 -13.74798 -13.57532 -13.52037 -13.23458 -13.16936 -12.94662 -12.89746 -12.82976 -12.72730 -12.29916 -12.20920 -11.99683 -11.86474 -11.76794 -11.55637 -11.42649 -11.23824 -10.96839 -10.72405 -10.46951 -9.72439 -9.35546 -8.88989 -7.74753 -5.19655 0.22054 1.33618 1.48966 1.50461 1.51695 1.60346 2.20559 2.28092 2.49358 2.63975 2.99099 3.36024 3.50476 3.60184 3.78081 3.82839 3.86130 3.99899 4.04670 4.09831 4.23142 4.35916 4.40717 4.48909 4.53237 4.67550 4.68794 4.74745 4.80916 4.85300 4.93482 4.95131 4.96803 4.98483 5.06332 5.07342 5.16106 5.27064 5.35751 5.47055 5.57145 5.76087 5.79902 6.03432 6.18618 6.28352 6.35314 6.61302 6.92560 7.11113 7.77587 8.43266 9.28136 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010549 B = 0.004612 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.601965 B = 6069.429321 C = 8097.115418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.028 4.028 3 C 0.011 3.989 4 N -0.511 5.511 5 H 0.441 0.559 6 C 0.117 3.883 7 C 0.607 3.393 8 O -0.568 6.568 9 N -0.586 5.586 10 C 0.088 3.912 11 C 0.065 3.935 12 H 0.050 0.950 13 C -0.134 4.134 14 O -0.377 6.377 15 C 0.110 3.890 16 C -0.143 4.143 17 C 0.169 3.831 18 N -0.619 5.619 19 C -0.235 4.235 20 H 0.086 0.914 21 C -0.068 4.068 22 N -0.953 5.953 23 Si 0.984 3.016 24 H -0.282 1.282 25 H -0.296 1.296 26 H -0.269 1.269 27 C 0.151 3.849 28 C 0.059 3.941 29 N -0.454 5.454 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.236 0.764 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.057 0.943 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.073 0.927 42 H -0.021 1.021 43 H 0.246 0.754 44 H 0.029 0.971 45 H 0.055 0.945 46 H 0.079 0.921 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.155 13.589 13.994 20.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.161 4.161 3 C -0.129 4.129 4 N -0.114 5.114 5 H 0.283 0.717 6 C -0.142 4.142 7 C 0.394 3.606 8 O -0.448 6.448 9 N -0.316 5.316 10 C -0.034 4.034 11 C 0.007 3.993 12 H 0.068 0.932 13 C -0.191 4.191 14 O -0.297 6.297 15 C 0.069 3.931 16 C -0.182 4.182 17 C 0.044 3.956 18 N -0.345 5.345 19 C -0.364 4.364 20 H 0.103 0.897 21 C -0.260 4.260 22 N -0.603 5.603 23 Si 0.812 3.188 24 H -0.208 1.208 25 H -0.223 1.223 26 H -0.194 1.194 27 C 0.025 3.975 28 C -0.064 4.064 29 N -0.179 5.179 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.122 0.878 33 H 0.252 0.748 34 H 0.126 0.874 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.091 0.909 42 H -0.003 1.003 43 H 0.056 0.944 44 H 0.047 0.953 45 H 0.073 0.927 46 H 0.097 0.903 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 7.408 12.729 13.910 20.258 hybrid contribution 0.016 0.455 -0.882 0.993 sum 7.425 13.185 13.028 19.967 Atomic orbital electron populations 1.20162 0.85605 1.04010 1.02861 1.21587 0.98326 0.88243 1.07942 1.23472 0.81553 1.02417 1.05419 1.42874 1.10355 1.06309 1.51864 0.71718 1.22232 0.93057 0.83495 1.15435 1.16668 0.85829 0.81567 0.76521 1.90776 1.24882 1.75858 1.53282 1.47830 1.08769 1.05090 1.69922 1.22428 0.89254 0.92085 0.99615 1.22606 0.84628 0.95488 0.96553 0.93171 1.21702 0.96253 0.97703 1.03464 1.87865 1.13741 1.33664 1.94405 1.22048 0.87285 0.89502 0.94220 1.23219 0.99806 0.98376 0.96813 1.21544 0.88583 0.92032 0.93418 1.44749 1.20559 1.67338 1.01898 1.19499 0.95670 1.29144 0.92079 0.89660 1.25659 1.02110 1.02281 0.95978 1.70074 1.37729 1.50748 1.01742 0.84998 0.78741 0.78124 0.76983 1.20847 1.22273 1.19412 1.21185 0.91647 0.97546 0.87076 1.23506 0.85373 1.00247 0.97228 1.69470 0.99949 1.31256 1.17215 0.91446 0.91963 0.87839 0.74785 0.87425 0.88800 0.92365 0.88258 0.90708 0.91615 0.91633 0.90942 1.00306 0.94426 0.95260 0.92723 0.90309 0.81803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.20 10.42 71.24 0.74 -0.45 16 2 C -0.03 -0.61 7.07 41.75 0.30 -0.31 16 3 C 0.01 0.17 11.91 83.52 0.99 1.16 16 4 N -0.51 -9.48 6.15 -188.02 -1.16 -10.63 16 5 H 0.44 5.92 8.96 -92.71 -0.83 5.09 16 6 C 0.12 3.15 7.74 136.28 1.06 4.20 16 7 C 0.61 18.24 7.71 86.66 0.67 18.91 16 8 O -0.57 -18.18 16.58 -4.05 -0.07 -18.24 16 9 N -0.59 -17.50 2.92 -823.20 -2.40 -19.90 16 10 C 0.09 2.30 5.87 86.20 0.51 2.81 16 11 C 0.07 1.92 3.16 30.55 0.10 2.02 16 12 H 0.05 1.62 6.13 -2.39 -0.01 1.60 16 13 C -0.13 -3.02 9.57 71.98 0.69 -2.33 16 14 O -0.38 -14.23 9.87 -148.97 -1.47 -15.70 16 15 C 0.11 4.24 0.83 -10.22 -0.01 4.23 16 16 C -0.14 -6.09 5.91 31.80 0.19 -5.91 16 17 C 0.17 9.07 5.89 86.88 0.51 9.59 16 18 N -0.62 -33.67 3.40 -692.50 -2.36 -36.03 16 19 C -0.24 -13.57 10.28 84.03 0.86 -12.71 16 20 H 0.09 4.66 7.83 -2.91 -0.02 4.63 16 21 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 22 N -0.95 -58.59 10.09 21.65 0.22 -58.37 16 23 Si 0.98 46.42 29.55 68.60 2.03 48.45 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 27 C 0.15 6.73 6.61 86.47 0.57 7.30 16 28 C 0.06 1.92 5.00 86.06 0.43 2.35 16 29 N -0.45 -12.84 7.54 -177.63 -1.34 -14.17 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.24 1.01 8.06 -2.91 -0.02 0.98 16 34 H 0.11 2.63 7.10 -2.39 -0.02 2.61 16 35 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.07 2.81 7.86 -2.39 -0.02 2.79 16 40 H 0.07 2.64 5.98 -2.39 -0.01 2.63 16 41 H 0.07 4.35 5.88 -2.39 -0.01 4.33 16 42 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 43 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 44 H 0.03 1.34 8.06 -2.38 -0.02 1.32 16 45 H 0.05 2.29 7.79 -2.39 -0.02 2.27 16 46 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 47 H 0.17 5.54 3.68 -44.61 -0.16 5.37 16 Total: -1.00 -76.86 369.81 1.54 -75.32 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.02 Total: 21.93 kcal Atomic # 6 Polarization: 19.27 SS G_CDS: 8.07 Total: 27.34 kcal Atomic # 7 Polarization: -132.07 SS G_CDS: -7.04 Total: -139.10 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -1.54 Total: -33.94 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -76.86 1.54 -75.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071219724.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.432 kcal (2) G-P(sol) polarization free energy of solvation -76.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds