Wall clock time and date at job start Tue Mar 31 2020 19:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.35564 * 125.82937 * 2 1 4 4 N 1.35403 * 107.16608 * 179.75608 * 3 2 1 5 5 H 0.96998 * 126.44371 * 180.24237 * 4 3 2 6 6 C 1.36673 * 107.11803 * 0.35702 * 4 3 2 7 7 C 1.47406 * 125.86085 * 179.90430 * 6 4 3 8 8 O 1.21601 * 119.99877 * 352.96992 * 7 6 4 9 9 N 1.34777 * 120.00060 * 172.97824 * 7 6 4 10 10 C 1.47155 * 121.07940 * 173.37323 * 9 7 6 11 11 C 1.53281 * 108.57356 * 128.76238 * 10 9 7 12 12 H 1.08997 * 109.50604 * 292.99929 * 11 10 9 13 13 C 1.52993 * 109.51135 * 172.90627 * 11 10 9 14 14 O 1.43116 * 109.22943 * 52.97422 * 11 10 9 15 15 C 1.41881 * 114.37174 * 299.11092 * 14 11 10 16 16 C 1.54375 * 110.71214 * 296.74180 * 15 14 11 17 17 C 1.54466 * 102.86626 * 276.29725 * 16 15 14 18 18 N 1.47089 * 107.29490 * 338.50031 * 17 16 15 19 19 C 1.36938 * 125.62859 * 179.02274 * 18 17 16 20 20 H 1.07998 * 119.99987 * 180.02562 * 19 18 17 21 21 C 1.38813 * 120.00087 * 0.02562 * 19 18 17 22 22 N 1.31623 * 120.00033 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00236 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47401 * 89.99794 * 23 21 19 25 25 H 1.48496 * 109.47061 * 209.99931 * 23 21 19 26 26 H 1.48503 * 109.46731 * 329.99404 * 23 21 19 27 27 C 1.47576 * 108.74150 * 359.01903 * 18 17 16 28 28 C 1.47334 * 121.07337 * 353.34300 * 9 7 6 29 29 N 1.31617 * 108.27016 * 359.63642 * 6 4 3 30 30 H 1.09006 * 109.46900 * 269.99738 * 1 2 3 31 31 H 1.09002 * 109.47279 * 29.99966 * 1 2 3 32 32 H 1.09004 * 109.47642 * 150.00472 * 1 2 3 33 33 H 1.08003 * 126.41598 * 0.02562 * 3 2 1 34 34 H 1.09001 * 109.62332 * 9.03375 * 10 9 7 35 35 H 1.09000 * 109.76927 * 248.57619 * 10 9 7 36 36 H 1.09000 * 109.47652 * 59.99766 * 13 11 10 37 37 H 1.09006 * 109.47229 * 299.99511 * 13 11 10 38 38 H 1.09003 * 109.47314 * 179.97438 * 13 11 10 39 39 H 1.08998 * 110.73409 * 34.63803 * 16 15 14 40 40 H 1.08996 * 110.73447 * 157.95672 * 16 15 14 41 41 H 1.09001 * 109.87902 * 97.92167 * 17 16 15 42 42 H 1.08994 * 109.87885 * 219.07459 * 17 16 15 43 43 H 0.96994 * 120.00175 * 179.97438 * 22 21 19 44 44 H 1.08998 * 110.37821 * 264.47824 * 27 18 17 45 45 H 1.09006 * 110.37186 * 142.12733 * 27 18 17 46 46 H 1.09002 * 109.67968 * 348.93936 * 28 9 7 47 47 H 1.08998 * 109.67628 * 109.47974 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3005 1.0991 0.0000 4 7 3.5833 0.6658 0.0055 5 1 4.3789 1.2207 0.0102 6 6 3.5465 -0.7004 0.0006 7 6 4.7174 -1.5958 0.0020 8 8 5.8357 -1.1344 -0.1211 9 7 4.5485 -2.9259 0.1394 10 6 5.6819 -3.8540 0.0000 11 6 5.7112 -4.7761 1.2241 12 1 5.9540 -4.1936 2.1128 13 6 6.7693 -5.8623 1.0204 14 8 4.4262 -5.3848 1.3866 15 6 3.3664 -4.4665 1.6019 16 6 3.5745 -3.6920 2.9209 17 6 2.9980 -4.6565 3.9808 18 7 2.0792 -5.5712 3.2859 19 6 1.3768 -6.5917 3.8694 20 1 0.7252 -7.2104 3.2702 21 6 1.5021 -6.8308 5.2310 22 7 2.2966 -6.0771 5.9612 23 14 0.5444 -8.2232 6.0268 24 1 1.3540 -9.4675 5.9861 25 1 0.2443 -7.8740 7.4386 26 1 -0.7265 -8.4351 5.2884 27 6 2.0394 -5.2076 1.8562 28 6 3.2231 -3.4976 0.4348 29 7 2.2860 -1.0792 0.0004 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 1.9711 2.1277 0.0004 34 1 6.6127 -3.2894 -0.0553 35 1 5.5612 -4.4501 -0.9045 36 1 7.7470 -5.3978 0.8924 37 1 6.5250 -6.4455 0.1325 38 1 6.7899 -6.5173 1.8914 39 1 4.6345 -3.5116 3.0994 40 1 3.0188 -2.7544 2.9097 41 1 3.8054 -5.2236 4.4441 42 1 2.4558 -4.0923 4.7395 43 1 2.3839 -6.2440 6.9127 44 1 1.1932 -4.5507 1.6551 45 1 1.9808 -6.1037 1.2383 46 1 2.5306 -2.6997 0.7030 47 1 2.8496 -4.0296 -0.4402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071219726.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:04 Heat of formation + Delta-G solvation = 29.895124 kcal Electronic energy + Delta-G solvation = -30637.559266 eV Core-core repulsion = 26630.120544 eV Total energy + Delta-G solvation = -4007.438722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.53908 -40.35718 -38.64658 -36.18873 -34.88728 -33.39551 -33.01509 -31.62530 -31.11819 -29.23925 -28.37678 -27.75348 -26.31005 -25.53327 -23.77007 -23.06979 -21.68685 -20.62353 -20.29742 -20.01669 -19.08609 -18.05815 -16.94676 -16.75258 -16.42549 -16.05952 -15.68686 -14.96270 -14.70060 -14.57771 -14.29160 -14.07130 -13.97710 -13.48865 -13.41287 -13.21657 -12.98616 -12.81679 -12.48912 -12.39610 -12.18246 -12.05067 -11.91652 -11.76116 -11.51751 -10.94014 -10.86794 -10.81394 -10.53550 -10.39825 -10.35379 -10.17479 -10.02988 -9.97314 -9.69787 -9.47630 -9.45544 -8.70177 -8.51012 -8.29431 -6.73885 -5.62345 -2.94959 1.15628 2.31299 2.34910 3.18785 3.21796 3.46261 3.50785 3.52724 3.93039 4.01371 4.54630 4.58539 4.79993 4.84771 4.98533 5.10576 5.14955 5.20912 5.35930 5.46829 5.53025 5.56057 5.59199 5.62616 5.67186 5.70649 5.74787 5.81128 5.89417 5.93040 6.10016 6.11658 6.20514 6.25482 6.35077 6.53704 6.56892 6.62466 6.64675 6.74991 6.91877 7.20363 7.55208 7.63073 7.70991 7.79274 7.91495 7.95077 8.33609 9.30268 9.90520 10.56759 11.49702 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012227 B = 0.004058 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.547105 B = 6898.753233 C = 8519.554327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.002 3.998 3 C -0.025 4.025 4 N -0.524 5.524 5 H 0.430 0.570 6 C 0.154 3.846 7 C 0.607 3.393 8 O -0.551 6.551 9 N -0.582 5.582 10 C 0.084 3.916 11 C 0.070 3.930 12 H 0.065 0.935 13 C -0.140 4.140 14 O -0.346 6.346 15 C 0.093 3.907 16 C -0.166 4.166 17 C 0.187 3.813 18 N -0.599 5.599 19 C -0.222 4.222 20 H 0.078 0.922 21 C -0.009 4.009 22 N -0.923 5.923 23 Si 0.911 3.089 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.155 3.845 28 C 0.068 3.932 29 N -0.432 5.432 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.186 0.814 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.046 0.954 42 H 0.041 0.959 43 H 0.251 0.749 44 H 0.039 0.961 45 H 0.050 0.950 46 H 0.146 0.854 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.262 14.135 -14.326 20.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.132 4.132 3 C -0.164 4.164 4 N -0.125 5.125 5 H 0.269 0.731 6 C -0.107 4.107 7 C 0.393 3.607 8 O -0.429 6.429 9 N -0.313 5.313 10 C -0.038 4.038 11 C 0.012 3.988 12 H 0.083 0.917 13 C -0.198 4.198 14 O -0.265 6.265 15 C 0.051 3.949 16 C -0.204 4.204 17 C 0.062 3.938 18 N -0.325 5.325 19 C -0.350 4.350 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.571 5.571 23 Si 0.742 3.258 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C 0.028 3.972 28 C -0.054 4.054 29 N -0.156 5.156 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.203 0.797 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.163 0.837 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.556 13.228 -14.178 19.714 hybrid contribution 0.277 0.718 0.542 0.941 sum 3.833 13.946 -13.636 19.877 Atomic orbital electron populations 1.20100 0.86837 1.02992 1.02911 1.21051 0.97211 0.88010 1.06910 1.22722 0.82888 1.01045 1.09747 1.42851 1.09222 1.07408 1.53055 0.73106 1.22551 0.93698 0.82212 1.12191 1.16476 0.85449 0.81579 0.77173 1.90804 1.24083 1.75535 1.52477 1.47804 1.11151 1.04471 1.67900 1.22477 0.90066 0.91664 0.99576 1.22427 0.85936 0.94434 0.96026 0.91722 1.21678 0.96328 0.98329 1.03419 1.87906 1.14204 1.32300 1.92052 1.22442 0.89903 0.89764 0.92767 1.23353 1.00558 0.99288 0.97204 1.21076 0.92827 0.89238 0.90624 1.44420 1.51230 1.35463 1.01419 1.19057 1.18676 1.05940 0.91334 0.90377 1.24776 1.00011 0.99439 0.96299 1.69972 1.40975 1.40430 1.05773 0.86121 0.79333 0.81730 0.78608 1.21703 1.21816 1.20699 1.21318 0.90701 0.96871 0.88343 1.23218 0.83856 0.99916 0.98452 1.70022 0.99231 1.29866 1.16485 0.90792 0.91185 0.90660 0.79680 0.88376 0.90309 0.91288 0.91749 0.91033 0.92190 0.91999 0.93608 0.94066 0.93910 0.94344 0.93187 0.83680 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.42 36.00 0.38 -0.21 16 2 C 0.00 0.02 7.07 -83.00 -0.59 -0.57 16 3 C -0.03 -0.22 11.91 -16.93 -0.20 -0.42 16 4 N -0.52 -5.28 6.15 -10.78 -0.07 -5.34 16 5 H 0.43 3.32 8.96 -40.82 -0.37 2.95 16 6 C 0.15 2.10 7.67 -154.52 -1.18 0.91 16 7 C 0.61 9.24 7.70 -12.53 -0.10 9.14 16 8 O -0.55 -9.07 16.57 5.28 0.09 -8.98 16 9 N -0.58 -8.79 2.95 -173.98 -0.51 -9.31 16 10 C 0.08 1.16 5.92 -3.54 -0.02 1.14 16 11 C 0.07 1.08 3.19 -26.59 -0.08 1.00 16 12 H 0.06 1.07 6.23 -51.93 -0.32 0.74 16 13 C -0.14 -1.76 9.57 37.15 0.36 -1.40 16 14 O -0.35 -6.63 9.93 -35.22 -0.35 -6.98 16 15 C 0.09 1.74 0.84 -89.65 -0.08 1.67 16 16 C -0.17 -3.35 5.87 -25.24 -0.15 -3.50 16 17 C 0.19 4.76 5.38 -2.95 -0.02 4.74 16 18 N -0.60 -15.76 3.40 -170.32 -0.58 -16.34 16 19 C -0.22 -6.31 10.28 -15.06 -0.15 -6.47 16 20 H 0.08 2.14 7.83 -52.49 -0.41 1.72 16 21 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 22 N -0.92 -27.78 10.31 55.49 0.57 -27.21 16 23 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C 0.15 3.31 6.42 -2.88 -0.02 3.29 16 28 C 0.07 1.08 4.86 -3.91 -0.02 1.06 16 29 N -0.43 -5.94 7.71 -7.50 -0.06 -5.99 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.19 0.82 8.06 -52.48 -0.42 0.40 16 34 H 0.10 1.29 7.06 -51.93 -0.37 0.92 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 1.18 6.07 -51.93 -0.32 0.86 16 40 H 0.06 1.21 7.83 -51.93 -0.41 0.80 16 41 H 0.05 1.30 7.39 -51.93 -0.38 0.92 16 42 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 43 H 0.25 7.32 8.31 -40.82 -0.34 6.99 16 44 H 0.04 0.79 7.99 -51.93 -0.42 0.37 16 45 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.15 2.35 4.19 -53.47 -0.22 2.13 16 47 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 371.18 15.07 5.59 5.59 Total: -1.00 -34.70 371.18 -9.27 -43.97 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -6.96 Total: 3.08 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: -1.97 Total: 10.01 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: -0.64 Total: -64.19 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.26 Total: -15.96 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.70 -9.27 -43.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071219726.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.863 kcal (2) G-P(sol) polarization free energy of solvation -34.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds