Wall clock time and date at job start Tue Mar 31 2020 19:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.35564 * 125.82937 * 2 1 4 4 N 1.35403 * 107.16608 * 179.75608 * 3 2 1 5 5 H 0.96998 * 126.44371 * 180.24237 * 4 3 2 6 6 C 1.36673 * 107.11803 * 0.35702 * 4 3 2 7 7 C 1.47406 * 125.86085 * 179.90430 * 6 4 3 8 8 O 1.21601 * 119.99877 * 352.96992 * 7 6 4 9 9 N 1.34777 * 120.00060 * 172.97824 * 7 6 4 10 10 C 1.47155 * 121.07940 * 173.37323 * 9 7 6 11 11 C 1.53281 * 108.57356 * 128.76238 * 10 9 7 12 12 H 1.08997 * 109.50604 * 292.99929 * 11 10 9 13 13 C 1.52993 * 109.51135 * 172.90627 * 11 10 9 14 14 O 1.43116 * 109.22943 * 52.97422 * 11 10 9 15 15 C 1.41881 * 114.37174 * 299.11092 * 14 11 10 16 16 C 1.54375 * 110.71214 * 296.74180 * 15 14 11 17 17 C 1.54466 * 102.86626 * 276.29725 * 16 15 14 18 18 N 1.47089 * 107.29490 * 338.50031 * 17 16 15 19 19 C 1.36938 * 125.62859 * 179.02274 * 18 17 16 20 20 H 1.07998 * 119.99987 * 180.02562 * 19 18 17 21 21 C 1.38813 * 120.00087 * 0.02562 * 19 18 17 22 22 N 1.31623 * 120.00033 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00236 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47401 * 89.99794 * 23 21 19 25 25 H 1.48496 * 109.47061 * 209.99931 * 23 21 19 26 26 H 1.48503 * 109.46731 * 329.99404 * 23 21 19 27 27 C 1.47576 * 108.74150 * 359.01903 * 18 17 16 28 28 C 1.47334 * 121.07337 * 353.34300 * 9 7 6 29 29 N 1.31617 * 108.27016 * 359.63642 * 6 4 3 30 30 H 1.09006 * 109.46900 * 269.99738 * 1 2 3 31 31 H 1.09002 * 109.47279 * 29.99966 * 1 2 3 32 32 H 1.09004 * 109.47642 * 150.00472 * 1 2 3 33 33 H 1.08003 * 126.41598 * 0.02562 * 3 2 1 34 34 H 1.09001 * 109.62332 * 9.03375 * 10 9 7 35 35 H 1.09000 * 109.76927 * 248.57619 * 10 9 7 36 36 H 1.09000 * 109.47652 * 59.99766 * 13 11 10 37 37 H 1.09006 * 109.47229 * 299.99511 * 13 11 10 38 38 H 1.09003 * 109.47314 * 179.97438 * 13 11 10 39 39 H 1.08998 * 110.73409 * 34.63803 * 16 15 14 40 40 H 1.08996 * 110.73447 * 157.95672 * 16 15 14 41 41 H 1.09001 * 109.87902 * 97.92167 * 17 16 15 42 42 H 1.08994 * 109.87885 * 219.07459 * 17 16 15 43 43 H 0.96994 * 120.00175 * 179.97438 * 22 21 19 44 44 H 1.08998 * 110.37821 * 264.47824 * 27 18 17 45 45 H 1.09006 * 110.37186 * 142.12733 * 27 18 17 46 46 H 1.09002 * 109.67968 * 348.93936 * 28 9 7 47 47 H 1.08998 * 109.67628 * 109.47974 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3005 1.0991 0.0000 4 7 3.5833 0.6658 0.0055 5 1 4.3789 1.2207 0.0102 6 6 3.5465 -0.7004 0.0006 7 6 4.7174 -1.5958 0.0020 8 8 5.8357 -1.1344 -0.1211 9 7 4.5485 -2.9259 0.1394 10 6 5.6819 -3.8540 0.0000 11 6 5.7112 -4.7761 1.2241 12 1 5.9540 -4.1936 2.1128 13 6 6.7693 -5.8623 1.0204 14 8 4.4262 -5.3848 1.3866 15 6 3.3664 -4.4665 1.6019 16 6 3.5745 -3.6920 2.9209 17 6 2.9980 -4.6565 3.9808 18 7 2.0792 -5.5712 3.2859 19 6 1.3768 -6.5917 3.8694 20 1 0.7252 -7.2104 3.2702 21 6 1.5021 -6.8308 5.2310 22 7 2.2966 -6.0771 5.9612 23 14 0.5444 -8.2232 6.0268 24 1 1.3540 -9.4675 5.9861 25 1 0.2443 -7.8740 7.4386 26 1 -0.7265 -8.4351 5.2884 27 6 2.0394 -5.2076 1.8562 28 6 3.2231 -3.4976 0.4348 29 7 2.2860 -1.0792 0.0004 30 1 -0.3633 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5138 33 1 1.9711 2.1277 0.0004 34 1 6.6127 -3.2894 -0.0553 35 1 5.5612 -4.4501 -0.9045 36 1 7.7470 -5.3978 0.8924 37 1 6.5250 -6.4455 0.1325 38 1 6.7899 -6.5173 1.8914 39 1 4.6345 -3.5116 3.0994 40 1 3.0188 -2.7544 2.9097 41 1 3.8054 -5.2236 4.4441 42 1 2.4558 -4.0923 4.7395 43 1 2.3839 -6.2440 6.9127 44 1 1.1932 -4.5507 1.6551 45 1 1.9808 -6.1037 1.2383 46 1 2.5306 -2.6997 0.7030 47 1 2.8496 -4.0296 -0.4402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071219726.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:03 Heat of formation + Delta-G solvation = 6.296715 kcal Electronic energy + Delta-G solvation = -30638.582570 eV Core-core repulsion = 26630.120544 eV Total energy + Delta-G solvation = -4008.462026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.38614 -41.66881 -39.96100 -37.87483 -36.11043 -34.75380 -34.20851 -33.08957 -32.18177 -31.08374 -29.98498 -28.64131 -27.49113 -27.04383 -25.51155 -24.11156 -23.04714 -22.03858 -21.37576 -21.31516 -20.45547 -19.15675 -18.91494 -17.86611 -17.67368 -17.11710 -16.92774 -16.71112 -16.23503 -15.82347 -15.59864 -15.44760 -15.15594 -14.95308 -14.75279 -14.35904 -14.04617 -14.01970 -13.76046 -13.55500 -13.55085 -13.18797 -13.16213 -13.01344 -12.90779 -12.79618 -12.76020 -12.28997 -12.07076 -12.00702 -11.84347 -11.79292 -11.64394 -11.44604 -11.21630 -10.96543 -10.68649 -10.60829 -9.71651 -9.34450 -8.88475 -7.82090 -5.17547 0.23210 1.35210 1.47244 1.50117 1.51260 1.58601 2.20509 2.28898 2.51618 2.63388 3.00557 3.36686 3.49064 3.58227 3.79243 3.84552 3.88650 3.98592 4.02998 4.11692 4.22775 4.36621 4.38536 4.48061 4.50723 4.67656 4.71467 4.76871 4.80001 4.82406 4.92732 4.94826 4.98098 5.00453 5.05841 5.08492 5.13728 5.25708 5.33996 5.45328 5.59115 5.71501 5.74694 6.04586 6.17901 6.19301 6.38928 6.62358 6.93040 7.10999 7.77837 8.43305 9.29138 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012227 B = 0.004058 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.547105 B = 6898.753233 C = 8519.554327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.028 4.028 3 C 0.009 3.991 4 N -0.513 5.513 5 H 0.440 0.560 6 C 0.114 3.886 7 C 0.607 3.393 8 O -0.570 6.570 9 N -0.588 5.588 10 C 0.089 3.911 11 C 0.066 3.934 12 H 0.048 0.952 13 C -0.134 4.134 14 O -0.371 6.371 15 C 0.105 3.895 16 C -0.148 4.148 17 C 0.201 3.799 18 N -0.619 5.619 19 C -0.237 4.237 20 H 0.086 0.914 21 C -0.068 4.068 22 N -0.955 5.955 23 Si 0.981 3.019 24 H -0.288 1.288 25 H -0.295 1.295 26 H -0.265 1.265 27 C 0.150 3.850 28 C 0.084 3.916 29 N -0.453 5.453 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.234 0.766 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.004 0.996 42 H 0.007 0.993 43 H 0.245 0.755 44 H 0.055 0.945 45 H 0.051 0.949 46 H 0.147 0.853 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.691 15.619 -16.294 22.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.162 4.162 3 C -0.131 4.131 4 N -0.116 5.116 5 H 0.281 0.719 6 C -0.145 4.145 7 C 0.394 3.606 8 O -0.449 6.449 9 N -0.318 5.318 10 C -0.033 4.033 11 C 0.008 3.992 12 H 0.066 0.934 13 C -0.192 4.192 14 O -0.291 6.291 15 C 0.063 3.937 16 C -0.186 4.186 17 C 0.075 3.925 18 N -0.345 5.345 19 C -0.366 4.366 20 H 0.104 0.896 21 C -0.261 4.261 22 N -0.605 5.605 23 Si 0.809 3.191 24 H -0.215 1.215 25 H -0.221 1.221 26 H -0.189 1.189 27 C 0.024 3.976 28 C -0.039 4.039 29 N -0.178 5.178 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.082 0.918 33 H 0.250 0.750 34 H 0.125 0.875 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.022 0.978 42 H 0.025 0.975 43 H 0.054 0.946 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.164 0.836 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.007 14.712 -16.191 22.082 hybrid contribution 0.425 0.348 1.127 1.254 sum 3.432 15.060 -15.064 21.575 Atomic orbital electron populations 1.20162 0.85343 1.04003 1.03029 1.21608 0.98430 0.88147 1.07983 1.23494 0.81612 1.02513 1.05515 1.42917 1.10377 1.06430 1.51877 0.71853 1.22200 0.93157 0.83390 1.15716 1.16685 0.85847 0.81581 0.76452 1.90779 1.24939 1.75755 1.53466 1.47825 1.10961 1.04872 1.68181 1.22492 0.90199 0.91379 0.99189 1.22646 0.84825 0.95483 0.96256 0.93441 1.21692 0.96859 0.97543 1.03059 1.87866 1.15625 1.33404 1.92184 1.22238 0.88803 0.89539 0.93092 1.23140 1.00460 0.98419 0.96597 1.20721 0.91146 0.89193 0.91410 1.44693 1.51017 1.35223 1.03609 1.19501 1.18753 1.06457 0.91886 0.89591 1.25667 1.01341 1.02115 0.96948 1.70210 1.42591 1.42157 1.05537 0.85041 0.78463 0.78375 0.77249 1.21523 1.22141 1.18933 1.21505 0.92859 0.97508 0.85720 1.22984 0.84531 0.99108 0.97282 1.69858 0.99695 1.31627 1.16629 0.91057 0.88140 0.91757 0.74969 0.87505 0.88603 0.88297 0.90657 0.92776 0.91737 0.91075 0.97758 0.97515 0.94575 0.92767 0.93087 0.83589 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.42 71.23 0.74 -0.23 16 2 C -0.03 -0.55 7.07 41.74 0.30 -0.25 16 3 C 0.01 0.12 11.91 83.52 0.99 1.11 16 4 N -0.51 -9.06 6.15 -188.01 -1.16 -10.21 16 5 H 0.44 5.70 8.96 -92.71 -0.83 4.87 16 6 C 0.11 2.94 7.67 136.28 1.04 3.98 16 7 C 0.61 17.84 7.70 86.66 0.67 18.51 16 8 O -0.57 -18.19 16.57 -4.03 -0.07 -18.25 16 9 N -0.59 -17.14 2.95 -822.59 -2.42 -19.56 16 10 C 0.09 2.33 5.92 86.35 0.51 2.84 16 11 C 0.07 2.00 3.19 30.69 0.10 2.10 16 12 H 0.05 1.59 6.23 -2.39 -0.01 1.58 16 13 C -0.13 -3.23 9.57 71.98 0.69 -2.54 16 14 O -0.37 -14.28 9.93 -148.95 -1.48 -15.76 16 15 C 0.10 3.94 0.84 -10.17 -0.01 3.93 16 16 C -0.15 -6.14 5.87 31.56 0.19 -5.95 16 17 C 0.20 10.72 5.38 86.77 0.47 11.19 16 18 N -0.62 -33.51 3.40 -692.75 -2.36 -35.87 16 19 C -0.24 -13.78 10.28 84.03 0.86 -12.91 16 20 H 0.09 4.72 7.83 -2.91 -0.02 4.70 16 21 C -0.07 -4.03 5.49 84.86 0.47 -3.56 16 22 N -0.96 -59.88 10.31 21.65 0.22 -59.66 16 23 Si 0.98 47.10 29.55 68.60 2.03 49.13 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 25 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 26 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 27 C 0.15 6.45 6.42 86.55 0.56 7.00 16 28 C 0.08 2.59 4.86 86.01 0.42 3.00 16 29 N -0.45 -11.81 7.71 -177.64 -1.37 -13.18 16 30 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.23 0.74 8.06 -2.91 -0.02 0.71 16 34 H 0.11 2.63 7.06 -2.39 -0.02 2.62 16 35 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.06 2.61 6.07 -2.39 -0.01 2.59 16 40 H 0.07 2.81 7.83 -2.39 -0.02 2.79 16 41 H 0.00 0.25 7.39 -2.39 -0.02 0.24 16 42 H 0.01 0.40 7.50 -2.39 -0.02 0.38 16 43 H 0.25 14.92 8.31 -92.71 -0.77 14.14 16 44 H 0.05 2.18 7.99 -2.39 -0.02 2.16 16 45 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 46 H 0.15 4.62 4.19 -5.43 -0.02 4.59 16 47 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -78.55 371.18 1.54 -77.01 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.16 Total: 18.14 kcal Atomic # 6 Polarization: 20.23 SS G_CDS: 7.99 Total: 28.22 kcal Atomic # 7 Polarization: -131.40 SS G_CDS: -7.08 Total: -138.49 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -1.55 Total: -34.01 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -78.55 1.54 -77.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071219726.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.305 kcal (2) G-P(sol) polarization free energy of solvation -78.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds