Wall clock time and date at job start Tue Mar 31 2020 19:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33316 * 126.10769 * 2 1 4 4 C 1.30861 * 109.68518 * 179.97438 * 3 2 1 5 5 N 1.34489 * 109.16176 * 359.97438 * 4 3 2 6 6 H 0.97000 * 126.47360 * 179.97438 * 5 4 3 7 7 C 1.36665 * 126.10755 * 179.97438 * 2 1 3 8 8 C 1.46766 * 126.84074 * 0.02562 * 7 2 1 9 9 O 1.21681 * 119.99826 * 251.81829 * 8 7 2 10 10 N 1.34771 * 120.00350 * 71.82059 * 8 7 2 11 11 C 1.47167 * 121.08039 * 185.63108 * 10 8 7 12 12 C 1.53285 * 108.55526 * 231.23402 * 11 10 8 13 13 H 1.09000 * 109.50624 * 66.89211 * 12 11 10 14 14 C 1.52995 * 109.51049 * 186.99193 * 12 11 10 15 15 O 1.43119 * 109.22126 * 306.96910 * 12 11 10 16 16 C 1.41875 * 114.39765 * 60.88383 * 15 12 11 17 17 C 1.54369 * 110.73709 * 176.75753 * 16 15 12 18 18 C 1.54453 * 102.87563 * 276.33430 * 17 16 15 19 19 N 1.47079 * 107.29609 * 338.49810 * 18 17 16 20 20 C 1.36940 * 125.63302 * 178.98376 * 19 18 17 21 21 H 1.07999 * 120.00619 * 180.02562 * 20 19 18 22 22 C 1.38816 * 119.99674 * 0.02881 * 20 19 18 23 23 N 1.31621 * 120.00176 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00052 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46929 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46804 * 120.00098 * 24 22 20 27 27 H 1.48495 * 109.47534 * 240.00360 * 24 22 20 28 28 C 1.47572 * 108.74378 * 359.01047 * 19 18 17 29 29 C 1.47329 * 121.08073 * 5.34892 * 10 8 7 30 30 H 1.08999 * 109.47414 * 90.02078 * 1 2 3 31 31 H 1.09002 * 109.47166 * 210.02710 * 1 2 3 32 32 H 1.09004 * 109.46583 * 330.02003 * 1 2 3 33 33 H 1.08000 * 125.41490 * 179.97438 * 4 3 2 34 34 H 1.09004 * 109.62622 * 350.95598 * 11 10 8 35 35 H 1.08998 * 109.62483 * 111.32567 * 11 10 8 36 36 H 1.08999 * 109.47232 * 60.00535 * 14 12 11 37 37 H 1.09010 * 109.46999 * 180.02562 * 14 12 11 38 38 H 1.08997 * 109.47440 * 299.99838 * 14 12 11 39 39 H 1.09000 * 110.72923 * 34.68492 * 17 16 15 40 40 H 1.09004 * 110.73122 * 157.98235 * 17 16 15 41 41 H 1.09002 * 109.87806 * 97.92968 * 18 17 16 42 42 H 1.09009 * 109.87869 * 218.92922 * 18 17 16 43 43 H 0.96994 * 120.00180 * 179.97438 * 23 22 20 44 44 H 1.08993 * 110.37482 * 264.49233 * 28 19 18 45 45 H 1.09001 * 110.37894 * 142.13685 * 28 19 18 46 46 H 1.09000 * 109.64550 * 250.55233 * 29 10 8 47 47 H 1.09007 * 109.64044 * 11.18299 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5479 0.7071 0.0006 5 7 3.6121 -0.6362 0.0015 6 1 4.4188 -1.1749 0.0017 7 6 2.3124 -1.1041 0.0005 8 6 1.8820 -2.5073 0.0006 9 8 2.0176 -3.1851 1.0020 10 7 1.3367 -3.0450 -1.1084 11 6 0.7852 -4.4094 -1.0989 12 6 1.3907 -5.1884 -2.2720 13 1 2.4579 -5.3311 -2.1020 14 6 0.7051 -6.5511 -2.3887 15 8 1.1940 -4.4480 -3.4809 16 6 1.8067 -3.1684 -3.4907 17 6 1.6109 -2.4790 -4.8579 18 6 2.7558 -3.0710 -5.7090 19 7 3.7805 -3.5679 -4.7783 20 6 4.9501 -4.1847 -5.1347 21 1 5.6403 -4.5153 -4.3726 22 6 5.2485 -4.3851 -6.4755 23 7 4.4076 -3.9819 -7.4043 24 14 6.8442 -5.2259 -6.9617 25 1 7.6097 -5.5796 -5.7393 26 1 6.5394 -6.4603 -7.7289 27 1 7.6517 -4.3067 -7.8032 28 6 3.3401 -3.2928 -3.3970 29 6 1.2676 -2.2838 -2.3679 30 1 -0.3634 -0.0004 -1.0276 31 1 -0.3633 -0.8898 0.5143 32 1 -0.3632 0.8902 0.5136 33 1 4.3970 1.3744 0.0003 34 1 1.0424 -4.9017 -0.1610 35 1 -0.2988 -4.3669 -1.2047 36 1 -0.3617 -6.4076 -2.5604 37 1 1.1365 -7.1047 -3.2228 38 1 0.8523 -7.1122 -1.4659 39 1 0.6409 -2.7356 -5.2839 40 1 1.7186 -1.3984 -4.7641 41 1 2.3784 -3.8924 -6.3180 42 1 3.1785 -2.2978 -6.3507 43 1 4.6163 -4.1216 -8.3411 44 1 3.7753 -2.3600 -3.0386 45 1 3.6144 -4.1179 -2.7397 46 1 0.2326 -2.0127 -2.5759 47 1 1.8760 -1.3830 -2.2854 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071248661.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:14 Heat of formation + Delta-G solvation = 19.064900 kcal Electronic energy + Delta-G solvation = -30964.436045 eV Core-core repulsion = 26956.527690 eV Total energy + Delta-G solvation = -4007.908356 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.37619 -40.45157 -38.68262 -36.29141 -34.83777 -33.40244 -33.20332 -31.62661 -31.13285 -29.47534 -28.33557 -27.84787 -26.36385 -25.66345 -23.85300 -22.86657 -21.83393 -21.15210 -20.22602 -19.66000 -19.13454 -18.21086 -17.07094 -17.01102 -16.49201 -15.99468 -15.43887 -15.14175 -14.89759 -14.75592 -14.41452 -14.12544 -13.98326 -13.59573 -13.47604 -13.16709 -13.01518 -12.96845 -12.54553 -12.36695 -12.23230 -12.18037 -12.05741 -11.81867 -11.59098 -11.08338 -10.93751 -10.91955 -10.75856 -10.46989 -10.30604 -10.17433 -10.12611 -10.10198 -9.87552 -9.75434 -9.62913 -8.64198 -8.58476 -8.46726 -6.87909 -5.75895 -3.09341 1.49528 2.10544 2.67672 2.88623 3.17959 3.35784 3.41203 3.43721 3.83177 4.23966 4.41376 4.43187 4.69600 4.86094 4.91606 4.99501 5.00826 5.09724 5.15480 5.36429 5.42426 5.46831 5.51109 5.54561 5.57246 5.60414 5.66445 5.75254 5.76515 5.78660 5.80899 6.04815 6.09047 6.13560 6.27745 6.33948 6.37953 6.41311 6.45402 6.53864 7.06963 7.13234 7.48478 7.57120 7.64294 7.75488 7.79084 7.89160 8.20475 9.16686 9.76377 10.41762 11.35818 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012560 B = 0.004192 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.726402 B = 6677.013318 C = 7604.597254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.057 3.943 3 N -0.492 5.492 4 C 0.210 3.790 5 N -0.540 5.540 6 H 0.427 0.573 7 C -0.072 4.072 8 C 0.599 3.401 9 O -0.534 6.534 10 N -0.595 5.595 11 C 0.084 3.916 12 C 0.072 3.928 13 H 0.068 0.932 14 C -0.139 4.139 15 O -0.345 6.345 16 C 0.092 3.908 17 C -0.130 4.130 18 C 0.182 3.818 19 N -0.596 5.596 20 C -0.230 4.230 21 H 0.075 0.925 22 C -0.005 4.005 23 N -0.919 5.919 24 Si 0.911 3.089 25 H -0.281 1.281 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.122 3.878 29 C 0.095 3.905 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.215 0.785 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.051 0.949 42 H 0.044 0.956 43 H 0.252 0.748 44 H 0.017 0.983 45 H 0.039 0.961 46 H 0.079 0.921 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.238 5.122 13.164 16.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.076 4.076 3 N -0.212 5.212 4 C -0.074 4.074 5 N -0.144 5.144 6 H 0.266 0.734 7 C -0.190 4.190 8 C 0.385 3.615 9 O -0.410 6.410 10 N -0.328 5.328 11 C -0.038 4.038 12 C 0.013 3.987 13 H 0.085 0.915 14 C -0.197 4.197 15 O -0.264 6.264 16 C 0.051 3.949 17 C -0.168 4.168 18 C 0.058 3.942 19 N -0.323 5.323 20 C -0.358 4.358 21 H 0.093 0.907 22 C -0.201 4.201 23 N -0.566 5.566 24 Si 0.741 3.259 25 H -0.206 1.206 26 H -0.217 1.217 27 H -0.217 1.217 28 C -0.005 4.005 29 C -0.028 4.028 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.232 0.768 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.034 0.966 45 H 0.057 0.943 46 H 0.097 0.903 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.446 5.419 13.343 16.696 hybrid contribution 1.894 -1.281 -0.150 2.292 sum -6.552 4.137 13.193 15.300 Atomic orbital electron populations 1.20152 0.87133 1.03032 1.02856 1.20881 0.96453 0.86801 1.03454 1.70026 1.00441 1.30200 1.20553 1.25070 0.97331 0.81822 1.03194 1.43190 1.07670 1.08676 1.54819 0.73418 1.20526 0.85396 0.94771 1.18277 1.16913 0.77598 0.84168 0.82841 1.90827 1.55738 1.61520 1.32923 1.48093 1.58982 1.15558 1.10166 1.22478 0.98596 0.81665 1.01096 1.22445 0.99861 0.91901 0.84447 0.91460 1.21671 1.01064 0.94196 1.02777 1.87853 1.74421 1.28137 1.35960 1.22395 0.93836 0.83688 0.94991 1.22854 1.01911 0.98613 0.93465 1.21162 0.85410 0.97416 0.90245 1.44397 1.20144 1.69056 0.98658 1.19039 0.94360 1.30866 0.91513 0.90694 1.24777 0.98580 1.01150 0.95612 1.69961 1.35648 1.51438 0.99550 0.86069 0.82720 0.78897 0.78197 1.20612 1.21658 1.21694 1.21879 0.91118 0.97637 0.89827 1.22456 1.02528 0.95309 0.82506 0.90594 0.91393 0.90430 0.76817 0.88221 0.90340 0.91785 0.90990 0.91172 0.90671 0.90954 0.93085 0.93748 0.93727 0.96593 0.94301 0.90271 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.24 36.01 0.37 -0.39 16 2 C 0.06 0.73 6.81 -82.52 -0.56 0.17 16 3 N -0.49 -6.32 11.20 -10.65 -0.12 -6.44 16 4 C 0.21 2.13 13.01 -90.58 -1.18 0.95 16 5 N -0.54 -5.91 6.19 -10.79 -0.07 -5.98 16 6 H 0.43 3.83 8.96 -40.82 -0.37 3.47 16 7 C -0.07 -0.95 5.13 -82.14 -0.42 -1.37 16 8 C 0.60 8.75 7.19 -12.82 -0.09 8.66 16 9 O -0.53 -9.20 16.58 5.21 0.09 -9.11 16 10 N -0.60 -8.11 2.95 -173.95 -0.51 -8.62 16 11 C 0.08 1.07 5.92 -3.53 -0.02 1.05 16 12 C 0.07 1.05 3.20 -26.59 -0.08 0.97 16 13 H 0.07 1.12 6.26 -51.93 -0.32 0.80 16 14 C -0.14 -1.67 9.57 37.15 0.36 -1.32 16 15 O -0.35 -6.08 9.92 -35.22 -0.35 -6.43 16 16 C 0.09 1.58 0.83 -89.43 -0.07 1.50 16 17 C -0.13 -2.32 6.12 -25.25 -0.15 -2.48 16 18 C 0.18 4.34 5.38 -2.96 -0.02 4.32 16 19 N -0.60 -14.96 3.40 -170.31 -0.58 -15.54 16 20 C -0.23 -6.34 10.28 -15.06 -0.15 -6.49 16 21 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 22 C 0.00 -0.13 5.49 -17.43 -0.10 -0.23 16 23 N -0.92 -26.65 10.31 55.49 0.57 -26.08 16 24 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 C 0.12 2.48 6.19 -2.87 -0.02 2.46 16 29 C 0.10 1.30 5.14 -3.71 -0.02 1.28 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.68 7.94 -51.93 -0.41 0.27 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.22 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.10 1.27 7.06 -51.93 -0.37 0.90 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.07 1.15 8.00 -51.93 -0.42 0.74 16 41 H 0.05 1.37 7.39 -51.93 -0.38 0.99 16 42 H 0.04 1.16 7.50 -51.92 -0.39 0.77 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.02 0.33 7.83 -51.93 -0.41 -0.08 16 45 H 0.04 0.82 6.10 -51.93 -0.32 0.50 16 46 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.09 1.29 6.10 -51.92 -0.32 0.97 16 LS Contribution 374.38 15.07 5.64 5.64 Total: -1.00 -34.42 374.38 -9.57 -43.99 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -7.05 Total: 2.57 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: -2.17 Total: 9.09 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: -0.71 Total: -62.65 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.26 Total: -15.53 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.42 -9.57 -43.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071248661.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.056 kcal (2) G-P(sol) polarization free energy of solvation -34.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds