Wall clock time and date at job start Tue Mar 31 2020 19:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33316 * 126.10769 * 2 1 4 4 C 1.30861 * 109.68518 * 179.97438 * 3 2 1 5 5 N 1.34489 * 109.16176 * 359.97438 * 4 3 2 6 6 H 0.97000 * 126.47360 * 179.97438 * 5 4 3 7 7 C 1.36665 * 126.10755 * 179.97438 * 2 1 3 8 8 C 1.46766 * 126.84074 * 0.02562 * 7 2 1 9 9 O 1.21681 * 119.99826 * 251.81829 * 8 7 2 10 10 N 1.34771 * 120.00350 * 71.82059 * 8 7 2 11 11 C 1.47167 * 121.08039 * 185.63108 * 10 8 7 12 12 C 1.53285 * 108.55526 * 231.23402 * 11 10 8 13 13 H 1.09000 * 109.50624 * 66.89211 * 12 11 10 14 14 C 1.52995 * 109.51049 * 186.99193 * 12 11 10 15 15 O 1.43119 * 109.22126 * 306.96910 * 12 11 10 16 16 C 1.41875 * 114.39765 * 60.88383 * 15 12 11 17 17 C 1.54369 * 110.73709 * 176.75753 * 16 15 12 18 18 C 1.54453 * 102.87563 * 276.33430 * 17 16 15 19 19 N 1.47079 * 107.29609 * 338.49810 * 18 17 16 20 20 C 1.36940 * 125.63302 * 178.98376 * 19 18 17 21 21 H 1.07999 * 120.00619 * 180.02562 * 20 19 18 22 22 C 1.38816 * 119.99674 * 0.02881 * 20 19 18 23 23 N 1.31621 * 120.00176 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00052 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46929 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46804 * 120.00098 * 24 22 20 27 27 H 1.48495 * 109.47534 * 240.00360 * 24 22 20 28 28 C 1.47572 * 108.74378 * 359.01047 * 19 18 17 29 29 C 1.47329 * 121.08073 * 5.34892 * 10 8 7 30 30 H 1.08999 * 109.47414 * 90.02078 * 1 2 3 31 31 H 1.09002 * 109.47166 * 210.02710 * 1 2 3 32 32 H 1.09004 * 109.46583 * 330.02003 * 1 2 3 33 33 H 1.08000 * 125.41490 * 179.97438 * 4 3 2 34 34 H 1.09004 * 109.62622 * 350.95598 * 11 10 8 35 35 H 1.08998 * 109.62483 * 111.32567 * 11 10 8 36 36 H 1.08999 * 109.47232 * 60.00535 * 14 12 11 37 37 H 1.09010 * 109.46999 * 180.02562 * 14 12 11 38 38 H 1.08997 * 109.47440 * 299.99838 * 14 12 11 39 39 H 1.09000 * 110.72923 * 34.68492 * 17 16 15 40 40 H 1.09004 * 110.73122 * 157.98235 * 17 16 15 41 41 H 1.09002 * 109.87806 * 97.92968 * 18 17 16 42 42 H 1.09009 * 109.87869 * 218.92922 * 18 17 16 43 43 H 0.96994 * 120.00180 * 179.97438 * 23 22 20 44 44 H 1.08993 * 110.37482 * 264.49233 * 28 19 18 45 45 H 1.09001 * 110.37894 * 142.13685 * 28 19 18 46 46 H 1.09000 * 109.64550 * 250.55233 * 29 10 8 47 47 H 1.09007 * 109.64044 * 11.18299 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5479 0.7071 0.0006 5 7 3.6121 -0.6362 0.0015 6 1 4.4188 -1.1749 0.0017 7 6 2.3124 -1.1041 0.0005 8 6 1.8820 -2.5073 0.0006 9 8 2.0176 -3.1851 1.0020 10 7 1.3367 -3.0450 -1.1084 11 6 0.7852 -4.4094 -1.0989 12 6 1.3907 -5.1884 -2.2720 13 1 2.4579 -5.3311 -2.1020 14 6 0.7051 -6.5511 -2.3887 15 8 1.1940 -4.4480 -3.4809 16 6 1.8067 -3.1684 -3.4907 17 6 1.6109 -2.4790 -4.8579 18 6 2.7558 -3.0710 -5.7090 19 7 3.7805 -3.5679 -4.7783 20 6 4.9501 -4.1847 -5.1347 21 1 5.6403 -4.5153 -4.3726 22 6 5.2485 -4.3851 -6.4755 23 7 4.4076 -3.9819 -7.4043 24 14 6.8442 -5.2259 -6.9617 25 1 7.6097 -5.5796 -5.7393 26 1 6.5394 -6.4603 -7.7289 27 1 7.6517 -4.3067 -7.8032 28 6 3.3401 -3.2928 -3.3970 29 6 1.2676 -2.2838 -2.3679 30 1 -0.3634 -0.0004 -1.0276 31 1 -0.3633 -0.8898 0.5143 32 1 -0.3632 0.8902 0.5136 33 1 4.3970 1.3744 0.0003 34 1 1.0424 -4.9017 -0.1610 35 1 -0.2988 -4.3669 -1.2047 36 1 -0.3617 -6.4076 -2.5604 37 1 1.1365 -7.1047 -3.2228 38 1 0.8523 -7.1122 -1.4659 39 1 0.6409 -2.7356 -5.2839 40 1 1.7186 -1.3984 -4.7641 41 1 2.3784 -3.8924 -6.3180 42 1 3.1785 -2.2978 -6.3507 43 1 4.6163 -4.1216 -8.3411 44 1 3.7753 -2.3600 -3.0386 45 1 3.6144 -4.1179 -2.7397 46 1 0.2326 -2.0127 -2.5759 47 1 1.8760 -1.3830 -2.2854 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071248661.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:13 Heat of formation + Delta-G solvation = -4.159396 kcal Electronic energy + Delta-G solvation = -30965.443126 eV Core-core repulsion = 26956.527690 eV Total energy + Delta-G solvation = -4008.915437 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.26065 -41.68110 -39.95314 -37.86811 -36.01681 -34.86508 -34.24685 -33.11200 -32.17649 -31.11450 -29.83473 -28.75164 -27.71400 -27.00852 -25.50449 -23.81462 -23.09501 -22.22313 -21.88214 -20.78252 -20.26847 -19.27702 -18.93772 -18.16920 -17.70997 -17.09979 -16.82826 -16.51552 -16.15764 -16.03976 -15.61080 -15.56234 -15.18885 -15.11404 -14.85508 -14.20930 -14.00348 -13.93652 -13.87164 -13.68317 -13.59320 -13.20044 -13.12744 -13.11484 -12.99405 -12.85007 -12.73101 -12.28343 -12.06370 -12.02755 -12.00073 -11.86013 -11.73658 -11.36920 -11.03231 -10.98955 -10.93644 -10.73110 -9.66963 -9.46712 -8.92640 -7.88481 -5.23798 0.58857 1.08355 1.42226 1.43205 1.52974 1.67926 2.00887 2.28654 2.44796 2.58447 3.28768 3.29994 3.40726 3.59196 3.66776 3.70759 3.84532 3.93889 4.01741 4.08175 4.16705 4.26158 4.28275 4.43342 4.53314 4.54230 4.61789 4.65562 4.75188 4.79891 4.80583 4.89461 4.94177 4.94628 5.01219 5.02746 5.04605 5.13552 5.29085 5.38502 5.56583 5.63258 5.74938 6.03312 6.15573 6.31393 6.32894 6.77056 6.93306 7.06783 7.72484 8.36604 9.21828 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012560 B = 0.004192 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.726402 B = 6677.013318 C = 7604.597254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.056 3.944 3 N -0.523 5.523 4 C 0.225 3.775 5 N -0.541 5.541 6 H 0.434 0.566 7 C -0.101 4.101 8 C 0.603 3.397 9 O -0.566 6.566 10 N -0.594 5.594 11 C 0.089 3.911 12 C 0.069 3.931 13 H 0.038 0.962 14 C -0.134 4.134 15 O -0.365 6.365 16 C 0.102 3.898 17 C -0.116 4.116 18 C 0.190 3.810 19 N -0.617 5.617 20 C -0.244 4.244 21 H 0.074 0.926 22 C -0.059 4.059 23 N -0.946 5.946 24 Si 0.975 3.025 25 H -0.269 1.269 26 H -0.292 1.292 27 H -0.289 1.289 28 C 0.122 3.878 29 C 0.109 3.891 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.255 0.745 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.009 0.991 42 H 0.012 0.988 43 H 0.248 0.752 44 H 0.025 0.975 45 H 0.028 0.972 46 H 0.109 0.891 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.052 6.036 14.525 18.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.077 4.077 3 N -0.243 5.243 4 C -0.059 4.059 5 N -0.145 5.145 6 H 0.274 0.726 7 C -0.218 4.218 8 C 0.391 3.609 9 O -0.445 6.445 10 N -0.325 5.325 11 C -0.033 4.033 12 C 0.011 3.989 13 H 0.056 0.944 14 C -0.191 4.191 15 O -0.284 6.284 16 C 0.061 3.939 17 C -0.154 4.154 18 C 0.065 3.935 19 N -0.343 5.343 20 C -0.373 4.373 21 H 0.092 0.908 22 C -0.253 4.253 23 N -0.595 5.595 24 Si 0.803 3.197 25 H -0.193 1.193 26 H -0.219 1.219 27 H -0.215 1.215 28 C -0.004 4.004 29 C -0.014 4.014 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.271 0.729 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.027 0.973 42 H 0.030 0.970 43 H 0.057 0.943 44 H 0.042 0.958 45 H 0.046 0.954 46 H 0.127 0.873 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.268 6.328 14.731 18.518 hybrid contribution 2.203 -1.560 -0.542 2.753 sum -7.065 4.768 14.189 16.552 Atomic orbital electron populations 1.20240 0.85821 1.03368 1.03817 1.21277 0.97500 0.86584 1.02358 1.70070 1.01550 1.30525 1.22167 1.25923 0.97827 0.81835 1.00294 1.43259 1.07367 1.09132 1.54709 0.72621 1.20421 0.86509 0.94124 1.20754 1.17066 0.76869 0.84581 0.82431 1.90806 1.57022 1.62582 1.34089 1.48119 1.58612 1.15825 1.09941 1.22491 0.99797 0.81001 0.99964 1.22581 0.98774 0.93231 0.84280 0.94360 1.21679 1.01582 0.92613 1.03263 1.87835 1.74163 1.28600 1.37829 1.22264 0.91395 0.84429 0.95850 1.22732 1.00015 0.99871 0.92814 1.20888 0.86863 0.95126 0.90617 1.44662 1.19833 1.68892 1.00943 1.19371 0.95453 1.30714 0.91782 0.90764 1.25581 1.01787 1.02241 0.95653 1.70176 1.37259 1.52636 0.99423 0.85069 0.79121 0.77521 0.77956 1.19338 1.21877 1.21540 1.22024 0.93889 0.97245 0.87222 1.22327 1.04003 0.94150 0.80950 0.89222 0.91351 0.89807 0.72897 0.88114 0.87723 0.90071 0.93008 0.88715 0.88920 0.88280 0.97308 0.96960 0.94288 0.95755 0.95398 0.87303 0.88578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.35 10.24 71.24 0.73 -0.63 16 2 C 0.06 1.31 6.81 41.97 0.29 1.60 16 3 N -0.52 -12.20 11.20 -187.59 -2.10 -14.30 16 4 C 0.22 3.98 13.01 180.33 2.35 6.32 16 5 N -0.54 -10.85 6.19 -188.05 -1.16 -12.01 16 6 H 0.43 7.19 8.96 -92.71 -0.83 6.36 16 7 C -0.10 -2.49 5.13 40.01 0.21 -2.28 16 8 C 0.60 16.75 7.19 86.47 0.62 17.37 16 9 O -0.57 -19.05 16.58 -4.29 -0.07 -19.12 16 10 N -0.59 -14.94 2.95 -822.49 -2.43 -17.37 16 11 C 0.09 2.09 5.92 86.35 0.51 2.60 16 12 C 0.07 1.97 3.20 30.69 0.10 2.07 16 13 H 0.04 1.30 6.26 -2.39 -0.01 1.29 16 14 C -0.13 -3.03 9.57 71.98 0.69 -2.34 16 15 O -0.37 -12.50 9.92 -148.95 -1.48 -13.97 16 16 C 0.10 3.35 0.83 -10.02 -0.01 3.34 16 17 C -0.12 -4.00 6.12 31.55 0.19 -3.81 16 18 C 0.19 9.31 5.38 86.76 0.47 9.77 16 19 N -0.62 -31.69 3.40 -692.75 -2.36 -34.04 16 20 C -0.24 -13.81 10.28 84.03 0.86 -12.95 16 21 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 22 C -0.06 -3.37 5.49 84.86 0.47 -2.91 16 23 N -0.95 -56.85 10.31 21.65 0.22 -56.63 16 24 Si 0.97 45.88 29.55 68.60 2.03 47.90 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 26 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 27 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 28 C 0.12 4.95 6.19 86.55 0.54 5.49 16 29 C 0.11 2.67 5.14 86.15 0.44 3.11 16 30 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.22 7.94 -2.39 -0.02 1.20 16 32 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.26 2.00 8.06 -2.91 -0.02 1.98 16 34 H 0.10 2.39 7.06 -2.39 -0.02 2.37 16 35 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 40 H 0.10 2.90 8.00 -2.38 -0.02 2.89 16 41 H 0.01 0.49 7.39 -2.39 -0.02 0.47 16 42 H 0.01 0.66 7.50 -2.38 -0.02 0.65 16 43 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 44 H 0.02 0.97 7.83 -2.39 -0.02 0.95 16 45 H 0.03 1.19 6.10 -2.39 -0.01 1.18 16 46 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.10 2.37 6.10 -2.38 -0.01 2.36 16 Total: -1.00 -77.51 374.38 1.26 -76.25 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.16 Total: 16.54 kcal Atomic # 6 Polarization: 18.30 SS G_CDS: 8.44 Total: 26.74 kcal Atomic # 7 Polarization: -126.52 SS G_CDS: -7.82 Total: -134.34 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -1.55 Total: -33.10 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -77.51 1.26 -76.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071248661.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.088 kcal (2) G-P(sol) polarization free energy of solvation -77.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds