Wall clock time and date at job start Tue Mar 31 2020 19:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33316 * 126.10577 * 2 1 4 4 C 1.30854 * 109.68424 * 180.02562 * 3 2 1 5 5 N 1.34498 * 109.16448 * 359.72194 * 4 3 2 6 6 H 0.97002 * 126.47714 * 180.29059 * 5 4 3 7 7 C 1.36655 * 126.10503 * 180.02562 * 2 1 3 8 8 C 1.46766 * 126.84686 * 359.97438 * 7 2 1 9 9 O 1.21683 * 119.99956 * 325.92801 * 8 7 2 10 10 N 1.34777 * 120.00097 * 145.92784 * 8 7 2 11 11 C 1.47168 * 121.07646 * 174.53163 * 10 8 7 12 12 C 1.53278 * 108.56554 * 128.76566 * 11 10 8 13 13 H 1.08998 * 109.51192 * 293.00295 * 12 11 10 14 14 C 1.53003 * 109.50682 * 172.90757 * 12 11 10 15 15 O 1.43126 * 109.23364 * 52.98037 * 12 11 10 16 16 C 1.41880 * 114.36579 * 299.10576 * 15 12 11 17 17 C 1.54371 * 110.71573 * 296.74012 * 16 15 12 18 18 C 1.54465 * 102.86323 * 276.29837 * 17 16 15 19 19 N 1.47085 * 107.29786 * 338.49871 * 18 17 16 20 20 C 1.36938 * 125.62900 * 179.02222 * 19 18 17 21 21 H 1.07997 * 119.99988 * 180.02562 * 20 19 18 22 22 C 1.38817 * 120.00100 * 0.02562 * 20 19 18 23 23 N 1.31625 * 119.99868 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99909 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47100 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.46905 * 120.00238 * 24 22 20 27 27 H 1.48500 * 109.46972 * 239.99910 * 24 22 20 28 28 C 1.47575 * 108.74035 * 359.01995 * 19 18 17 29 29 C 1.47335 * 121.07434 * 354.51277 * 10 8 7 30 30 H 1.08998 * 109.47065 * 269.97914 * 1 2 3 31 31 H 1.09005 * 109.46856 * 29.97574 * 1 2 3 32 32 H 1.08996 * 109.47219 * 149.97359 * 1 2 3 33 33 H 1.08001 * 125.42248 * 180.02562 * 4 3 2 34 34 H 1.09000 * 109.61551 * 9.04557 * 11 10 8 35 35 H 1.08994 * 109.77184 * 248.58285 * 11 10 8 36 36 H 1.08999 * 109.47113 * 59.99878 * 14 12 11 37 37 H 1.08999 * 109.46986 * 299.99626 * 14 12 11 38 38 H 1.09003 * 109.46791 * 179.97438 * 14 12 11 39 39 H 1.08999 * 110.73584 * 34.64243 * 17 16 15 40 40 H 1.08994 * 110.73501 * 157.95683 * 17 16 15 41 41 H 1.09006 * 109.87839 * 97.92574 * 18 17 16 42 42 H 1.09002 * 109.87953 * 219.06982 * 18 17 16 43 43 H 0.96999 * 119.99970 * 180.02562 * 23 22 20 44 44 H 1.08997 * 110.37857 * 264.47959 * 28 19 18 45 45 H 1.08997 * 110.37318 * 142.12636 * 28 19 18 46 46 H 1.08992 * 109.67918 * 348.93405 * 29 10 8 47 47 H 1.09000 * 109.67431 * 109.47774 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7072 -0.0006 5 7 3.6122 -0.6363 0.0052 6 1 4.4189 -1.1749 0.0102 7 6 2.3123 -1.1041 -0.0005 8 6 1.8820 -2.5073 -0.0006 9 8 0.8693 -2.8331 0.5901 10 7 2.6086 -3.4349 -0.6549 11 6 2.2671 -4.8640 -0.5727 12 6 2.1792 -5.4275 -1.9954 13 1 1.3291 -4.9816 -2.5117 14 6 2.0004 -6.9458 -1.9335 15 8 3.3849 -5.1165 -2.7011 16 6 3.6431 -3.7278 -2.8352 17 6 2.5411 -3.0461 -3.6743 18 6 3.0034 -3.3058 -5.1250 19 7 4.4475 -3.5815 -5.0812 20 6 5.2357 -3.8805 -6.1603 21 1 6.2904 -4.0681 -6.0232 22 6 4.6791 -3.9425 -7.4305 23 7 3.3938 -3.7133 -7.5976 24 14 5.7542 -4.3511 -8.9024 25 1 7.1526 -4.5634 -8.4503 26 1 5.2513 -5.5867 -9.5548 27 1 5.7132 -3.2274 -9.8724 28 6 4.9068 -3.4825 -3.6822 29 6 3.7700 -3.0509 -1.4761 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8903 -0.5135 32 1 -0.3633 -0.8897 -0.5142 33 1 4.3971 1.3744 -0.0003 34 1 1.3062 -4.9825 -0.0720 35 1 3.0382 -5.3958 -0.0153 36 1 1.0843 -7.1819 -1.3922 37 1 2.8517 -7.3911 -1.4187 38 1 1.9375 -7.3457 -2.9456 39 1 1.5724 -3.5101 -3.4890 40 1 2.5040 -1.9768 -3.4667 41 1 2.4741 -4.1663 -5.5343 42 1 2.8127 -2.4250 -5.7381 43 1 3.0047 -3.7570 -8.4851 44 1 5.3094 -2.4892 -3.4842 45 1 5.6570 -4.2454 -3.4742 46 1 3.7866 -1.9687 -1.6051 47 1 4.6884 -3.3770 -0.9879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071248663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:21 Heat of formation + Delta-G solvation = 24.585305 kcal Electronic energy + Delta-G solvation = -30786.450638 eV Core-core repulsion = 26778.781665 eV Total energy + Delta-G solvation = -4007.668973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.49309 -40.49480 -38.71152 -36.34168 -35.05864 -33.37343 -33.11740 -31.59585 -31.15009 -29.42053 -28.63733 -27.82707 -26.37924 -25.63191 -23.89033 -22.86030 -22.00068 -21.18165 -20.24872 -19.71534 -19.25131 -18.16412 -17.11104 -16.94111 -16.49835 -16.06069 -15.75120 -15.07956 -14.81793 -14.71698 -14.52203 -14.18364 -14.01599 -13.62388 -13.45142 -13.11988 -13.07836 -12.87673 -12.62343 -12.32481 -12.23420 -12.19439 -12.06637 -11.93676 -11.67135 -11.07651 -10.96729 -10.92681 -10.68045 -10.42196 -10.32261 -10.17047 -10.14538 -10.09153 -9.96860 -9.76484 -9.62063 -8.73778 -8.63122 -8.46755 -6.88505 -5.74141 -3.08146 1.19157 2.50982 2.55535 2.79791 3.14900 3.38159 3.43275 3.46078 3.76688 4.19786 4.38204 4.43876 4.64269 4.73377 4.84781 4.92270 5.00075 5.01519 5.07199 5.23509 5.38236 5.44262 5.45882 5.53511 5.56223 5.61319 5.69360 5.69937 5.77366 5.81309 5.88803 5.98938 6.01765 6.09426 6.25511 6.35045 6.37752 6.40188 6.41306 6.51946 6.97165 7.09304 7.50369 7.56468 7.58459 7.72308 7.79202 7.88977 8.20699 9.17548 9.77528 10.42107 11.37730 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013564 B = 0.003872 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.740153 B = 7229.051980 C = 8358.483082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.091 3.909 3 N -0.497 5.497 4 C 0.219 3.781 5 N -0.555 5.555 6 H 0.424 0.576 7 C -0.087 4.087 8 C 0.600 3.400 9 O -0.525 6.525 10 N -0.608 5.608 11 C 0.086 3.914 12 C 0.069 3.931 13 H 0.067 0.933 14 C -0.140 4.140 15 O -0.342 6.342 16 C 0.095 3.905 17 C -0.166 4.166 18 C 0.186 3.814 19 N -0.598 5.598 20 C -0.228 4.228 21 H 0.079 0.921 22 C -0.006 4.006 23 N -0.921 5.921 24 Si 0.912 3.088 25 H -0.280 1.280 26 H -0.290 1.290 27 H -0.291 1.291 28 C 0.154 3.846 29 C 0.082 3.918 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.216 0.784 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.048 0.952 42 H 0.043 0.957 43 H 0.252 0.748 44 H 0.033 0.967 45 H 0.052 0.948 46 H 0.092 0.908 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.813 2.614 17.403 17.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.043 4.043 3 N -0.217 5.217 4 C -0.065 4.065 5 N -0.162 5.162 6 H 0.265 0.735 7 C -0.202 4.202 8 C 0.388 3.612 9 O -0.401 6.401 10 N -0.342 5.342 11 C -0.036 4.036 12 C 0.010 3.990 13 H 0.085 0.915 14 C -0.198 4.198 15 O -0.261 6.261 16 C 0.053 3.947 17 C -0.204 4.204 18 C 0.061 3.939 19 N -0.324 5.324 20 C -0.356 4.356 21 H 0.097 0.903 22 C -0.203 4.203 23 N -0.568 5.568 24 Si 0.743 3.257 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.218 1.218 28 C 0.026 3.974 29 C -0.042 4.042 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.233 0.767 34 H 0.119 0.881 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.050 0.950 45 H 0.070 0.930 46 H 0.110 0.890 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.570 3.052 17.414 17.749 hybrid contribution 1.286 -0.988 -0.793 1.805 sum -0.284 2.064 16.621 16.751 Atomic orbital electron populations 1.20166 0.86672 1.03109 1.03005 1.20996 0.96791 0.86609 0.99892 1.70119 1.00456 1.30302 1.20783 1.25165 0.97446 0.82047 1.01886 1.43628 1.07959 1.08858 1.55712 0.73541 1.20748 0.84579 0.94843 1.20033 1.16882 0.83092 0.82621 0.78624 1.90819 1.24413 1.80091 1.44795 1.48104 1.30448 1.07207 1.48396 1.22415 1.03113 0.79503 0.98618 1.22483 0.89403 0.96634 0.90471 0.91512 1.21680 1.01932 0.92653 1.03510 1.87929 1.40595 1.22012 1.75538 1.22330 0.98890 0.81906 0.91535 1.23369 0.97859 0.99250 0.99929 1.21108 0.84137 1.00141 0.88494 1.44410 1.04966 1.82545 1.00457 1.19078 0.91191 1.40724 0.84608 0.90305 1.24799 0.96148 1.01857 0.97479 1.69973 1.10061 1.55456 1.21337 0.86037 0.79279 0.77624 0.82766 1.20485 1.21730 1.21758 1.21311 0.92198 0.98046 0.85803 1.22506 0.88134 1.01093 0.92468 0.90496 0.90768 0.90642 0.76728 0.88093 0.90590 0.91116 0.91784 0.90996 0.91737 0.92051 0.93379 0.93840 0.93766 0.94999 0.93017 0.88981 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 9.81 36.01 0.35 -0.51 16 2 C 0.09 1.23 7.14 -82.52 -0.59 0.64 16 3 N -0.50 -6.39 11.20 -10.65 -0.12 -6.51 16 4 C 0.22 2.03 13.01 -90.57 -1.18 0.86 16 5 N -0.55 -5.22 4.78 -10.79 -0.05 -5.28 16 6 H 0.42 2.86 7.50 -40.82 -0.31 2.55 16 7 C -0.09 -1.11 6.05 -82.14 -0.50 -1.61 16 8 C 0.60 8.46 7.42 -12.81 -0.10 8.37 16 9 O -0.53 -8.56 15.51 5.20 0.08 -8.48 16 10 N -0.61 -7.91 2.95 -174.20 -0.51 -8.43 16 11 C 0.09 1.06 5.92 -3.53 -0.02 1.04 16 12 C 0.07 0.97 3.19 -26.59 -0.08 0.88 16 13 H 0.07 1.03 6.23 -51.93 -0.32 0.70 16 14 C -0.14 -1.63 9.57 37.16 0.36 -1.27 16 15 O -0.34 -5.99 9.93 -35.22 -0.35 -6.34 16 16 C 0.10 1.59 0.84 -89.65 -0.08 1.52 16 17 C -0.17 -3.11 5.87 -25.24 -0.15 -3.26 16 18 C 0.19 4.51 5.38 -2.95 -0.02 4.49 16 19 N -0.60 -14.91 3.40 -170.32 -0.58 -15.49 16 20 C -0.23 -6.25 10.28 -15.06 -0.15 -6.40 16 21 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 22 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 23 N -0.92 -26.98 10.31 55.49 0.57 -26.40 16 24 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 C 0.15 2.98 6.42 -2.88 -0.02 2.96 16 29 C 0.08 1.03 4.23 -3.91 -0.02 1.01 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.95 7.50 -51.93 -0.39 0.56 16 33 H 0.22 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.10 1.24 7.06 -51.93 -0.37 0.87 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.19 6.07 -51.93 -0.32 0.87 16 40 H 0.06 1.10 7.82 -51.93 -0.41 0.70 16 41 H 0.05 1.32 7.39 -51.93 -0.38 0.94 16 42 H 0.04 1.17 7.50 -51.93 -0.39 0.78 16 43 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.03 0.57 7.99 -51.93 -0.42 0.16 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.09 1.09 4.89 -51.93 -0.25 0.84 16 47 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 368.85 15.07 5.56 5.56 Total: -1.00 -34.52 368.85 -9.61 -44.13 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -6.90 Total: 1.91 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -2.28 Total: 8.43 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: -0.69 Total: -62.11 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.27 Total: -14.82 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.52 -9.61 -44.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071248663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.712 kcal (2) G-P(sol) polarization free energy of solvation -34.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds