Wall clock time and date at job start Tue Mar 31 2020 19:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33316 * 126.10577 * 2 1 4 4 C 1.30854 * 109.68424 * 180.02562 * 3 2 1 5 5 N 1.34498 * 109.16448 * 359.72194 * 4 3 2 6 6 H 0.97002 * 126.47714 * 180.29059 * 5 4 3 7 7 C 1.36655 * 126.10503 * 180.02562 * 2 1 3 8 8 C 1.46766 * 126.84686 * 359.97438 * 7 2 1 9 9 O 1.21683 * 119.99956 * 325.92801 * 8 7 2 10 10 N 1.34777 * 120.00097 * 145.92784 * 8 7 2 11 11 C 1.47168 * 121.07646 * 174.53163 * 10 8 7 12 12 C 1.53278 * 108.56554 * 128.76566 * 11 10 8 13 13 H 1.08998 * 109.51192 * 293.00295 * 12 11 10 14 14 C 1.53003 * 109.50682 * 172.90757 * 12 11 10 15 15 O 1.43126 * 109.23364 * 52.98037 * 12 11 10 16 16 C 1.41880 * 114.36579 * 299.10576 * 15 12 11 17 17 C 1.54371 * 110.71573 * 296.74012 * 16 15 12 18 18 C 1.54465 * 102.86323 * 276.29837 * 17 16 15 19 19 N 1.47085 * 107.29786 * 338.49871 * 18 17 16 20 20 C 1.36938 * 125.62900 * 179.02222 * 19 18 17 21 21 H 1.07997 * 119.99988 * 180.02562 * 20 19 18 22 22 C 1.38817 * 120.00100 * 0.02562 * 20 19 18 23 23 N 1.31625 * 119.99868 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99909 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47100 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.46905 * 120.00238 * 24 22 20 27 27 H 1.48500 * 109.46972 * 239.99910 * 24 22 20 28 28 C 1.47575 * 108.74035 * 359.01995 * 19 18 17 29 29 C 1.47335 * 121.07434 * 354.51277 * 10 8 7 30 30 H 1.08998 * 109.47065 * 269.97914 * 1 2 3 31 31 H 1.09005 * 109.46856 * 29.97574 * 1 2 3 32 32 H 1.08996 * 109.47219 * 149.97359 * 1 2 3 33 33 H 1.08001 * 125.42248 * 180.02562 * 4 3 2 34 34 H 1.09000 * 109.61551 * 9.04557 * 11 10 8 35 35 H 1.08994 * 109.77184 * 248.58285 * 11 10 8 36 36 H 1.08999 * 109.47113 * 59.99878 * 14 12 11 37 37 H 1.08999 * 109.46986 * 299.99626 * 14 12 11 38 38 H 1.09003 * 109.46791 * 179.97438 * 14 12 11 39 39 H 1.08999 * 110.73584 * 34.64243 * 17 16 15 40 40 H 1.08994 * 110.73501 * 157.95683 * 17 16 15 41 41 H 1.09006 * 109.87839 * 97.92574 * 18 17 16 42 42 H 1.09002 * 109.87953 * 219.06982 * 18 17 16 43 43 H 0.96999 * 119.99970 * 180.02562 * 23 22 20 44 44 H 1.08997 * 110.37857 * 264.47959 * 28 19 18 45 45 H 1.08997 * 110.37318 * 142.12636 * 28 19 18 46 46 H 1.08992 * 109.67918 * 348.93405 * 29 10 8 47 47 H 1.09000 * 109.67431 * 109.47774 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7072 -0.0006 5 7 3.6122 -0.6363 0.0052 6 1 4.4189 -1.1749 0.0102 7 6 2.3123 -1.1041 -0.0005 8 6 1.8820 -2.5073 -0.0006 9 8 0.8693 -2.8331 0.5901 10 7 2.6086 -3.4349 -0.6549 11 6 2.2671 -4.8640 -0.5727 12 6 2.1792 -5.4275 -1.9954 13 1 1.3291 -4.9816 -2.5117 14 6 2.0004 -6.9458 -1.9335 15 8 3.3849 -5.1165 -2.7011 16 6 3.6431 -3.7278 -2.8352 17 6 2.5411 -3.0461 -3.6743 18 6 3.0034 -3.3058 -5.1250 19 7 4.4475 -3.5815 -5.0812 20 6 5.2357 -3.8805 -6.1603 21 1 6.2904 -4.0681 -6.0232 22 6 4.6791 -3.9425 -7.4305 23 7 3.3938 -3.7133 -7.5976 24 14 5.7542 -4.3511 -8.9024 25 1 7.1526 -4.5634 -8.4503 26 1 5.2513 -5.5867 -9.5548 27 1 5.7132 -3.2274 -9.8724 28 6 4.9068 -3.4825 -3.6822 29 6 3.7700 -3.0509 -1.4761 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8903 -0.5135 32 1 -0.3633 -0.8897 -0.5142 33 1 4.3971 1.3744 -0.0003 34 1 1.3062 -4.9825 -0.0720 35 1 3.0382 -5.3958 -0.0153 36 1 1.0843 -7.1819 -1.3922 37 1 2.8517 -7.3911 -1.4187 38 1 1.9375 -7.3457 -2.9456 39 1 1.5724 -3.5101 -3.4890 40 1 2.5040 -1.9768 -3.4667 41 1 2.4741 -4.1663 -5.5343 42 1 2.8127 -2.4250 -5.7381 43 1 3.0047 -3.7570 -8.4851 44 1 5.3094 -2.4892 -3.4842 45 1 5.6570 -4.2454 -3.4742 46 1 3.7866 -1.9687 -1.6051 47 1 4.6884 -3.3770 -0.9879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071248663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:20 Heat of formation + Delta-G solvation = 1.419866 kcal Electronic energy + Delta-G solvation = -30787.455167 eV Core-core repulsion = 26778.781665 eV Total energy + Delta-G solvation = -4008.673502 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.34752 -41.68575 -39.92863 -37.90416 -36.16361 -34.80121 -34.19509 -33.07690 -32.14691 -31.12928 -30.08939 -28.76329 -27.63897 -26.98148 -25.54686 -23.79163 -23.14507 -22.35930 -21.85589 -20.80856 -20.36662 -19.19183 -18.96679 -18.02993 -17.58398 -17.15526 -16.85845 -16.72310 -16.18219 -15.88309 -15.65480 -15.50853 -15.29002 -15.07686 -14.77318 -14.25266 -14.06815 -13.99218 -13.87374 -13.77725 -13.59134 -13.19955 -13.15654 -13.08785 -13.01763 -12.84264 -12.80868 -12.31250 -12.10034 -11.99113 -11.88669 -11.80347 -11.69521 -11.37618 -11.04380 -10.99414 -10.92666 -10.72632 -9.76750 -9.46106 -8.92013 -7.85438 -5.21047 0.28785 1.45944 1.47160 1.52829 1.57444 1.66414 1.98281 2.23963 2.48397 2.55415 3.28668 3.34240 3.39493 3.54481 3.62806 3.70235 3.79564 3.93130 3.96862 4.07050 4.10437 4.22041 4.28161 4.33841 4.41106 4.49796 4.65578 4.70233 4.71489 4.75845 4.77384 4.81337 4.90497 4.91796 4.97066 5.01684 5.03680 5.12807 5.28693 5.43634 5.51233 5.55571 5.69666 6.04507 6.16390 6.32218 6.33795 6.82798 6.92043 7.07780 7.75216 8.39086 9.25766 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013564 B = 0.003872 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.740153 B = 7229.051980 C = 8358.483082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.072 3.928 3 N -0.533 5.533 4 C 0.239 3.761 5 N -0.543 5.543 6 H 0.439 0.561 7 C -0.105 4.105 8 C 0.601 3.399 9 O -0.554 6.554 10 N -0.607 5.607 11 C 0.091 3.909 12 C 0.066 3.934 13 H 0.045 0.955 14 C -0.135 4.135 15 O -0.367 6.367 16 C 0.105 3.895 17 C -0.150 4.150 18 C 0.199 3.801 19 N -0.620 5.620 20 C -0.236 4.236 21 H 0.089 0.911 22 C -0.068 4.068 23 N -0.955 5.955 24 Si 0.978 3.022 25 H -0.261 1.261 26 H -0.296 1.296 27 H -0.293 1.293 28 C 0.148 3.852 29 C 0.093 3.907 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.263 0.737 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.002 0.998 42 H 0.005 0.995 43 H 0.245 0.755 44 H 0.061 0.939 45 H 0.056 0.944 46 H 0.103 0.897 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.570 2.973 19.588 19.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.062 4.062 3 N -0.253 5.253 4 C -0.045 4.045 5 N -0.151 5.151 6 H 0.282 0.718 7 C -0.221 4.221 8 C 0.390 3.610 9 O -0.432 6.432 10 N -0.339 5.339 11 C -0.031 4.031 12 C 0.008 3.992 13 H 0.063 0.937 14 C -0.193 4.193 15 O -0.286 6.286 16 C 0.063 3.937 17 C -0.189 4.189 18 C 0.073 3.927 19 N -0.346 5.346 20 C -0.365 4.365 21 H 0.107 0.893 22 C -0.261 4.261 23 N -0.605 5.605 24 Si 0.807 3.193 25 H -0.185 1.185 26 H -0.223 1.223 27 H -0.220 1.220 28 C 0.022 3.978 29 C -0.031 4.031 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.278 0.722 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.020 0.980 42 H 0.023 0.977 43 H 0.054 0.946 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.121 0.879 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.864 3.393 19.638 19.948 hybrid contribution 0.556 -1.081 -1.457 1.897 sum 1.420 2.312 18.181 18.382 Atomic orbital electron populations 1.20141 0.86768 1.02752 1.03175 1.21234 0.97366 0.87341 1.00253 1.70122 1.01996 1.30571 1.22607 1.26096 0.97606 0.82334 0.98441 1.43551 1.07327 1.09091 1.55092 0.71787 1.20542 0.86035 0.93967 1.21568 1.17031 0.82599 0.83131 0.78237 1.90801 1.25590 1.80640 1.46153 1.48115 1.30412 1.07358 1.48017 1.22410 1.04107 0.79288 0.97250 1.22643 0.87380 0.98153 0.91066 0.93689 1.21690 1.03832 0.90835 1.02902 1.87897 1.41965 1.22253 1.76489 1.22173 0.96133 0.82098 0.93251 1.23166 0.98684 1.00254 0.96787 1.20722 0.84231 0.96455 0.91256 1.44683 1.05015 1.82418 1.02485 1.19528 0.91966 1.39341 0.85616 0.89320 1.25661 0.97354 1.02692 1.00379 1.70213 1.11858 1.57185 1.21234 0.85008 0.78499 0.76673 0.79166 1.18474 1.22349 1.22030 1.21582 0.93471 0.99496 0.83221 1.22442 0.89335 1.01276 0.90014 0.90082 0.90204 0.91832 0.72156 0.87956 0.88289 0.88541 0.90481 0.92954 0.91832 0.90905 0.97967 0.97655 0.94604 0.92161 0.92577 0.87873 0.87046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.70 9.81 71.24 0.70 -1.00 16 2 C 0.07 1.86 7.14 41.96 0.30 2.16 16 3 N -0.53 -12.56 11.20 -187.59 -2.10 -14.66 16 4 C 0.24 3.56 13.01 180.33 2.35 5.90 16 5 N -0.54 -8.23 4.78 -188.04 -0.90 -9.13 16 6 H 0.44 3.86 7.50 -92.71 -0.70 3.17 16 7 C -0.11 -2.48 6.05 40.01 0.24 -2.24 16 8 C 0.60 15.90 7.42 86.47 0.64 16.54 16 9 O -0.55 -17.60 15.51 -4.29 -0.07 -17.66 16 10 N -0.61 -14.23 2.95 -823.28 -2.43 -16.66 16 11 C 0.09 2.04 5.92 86.34 0.51 2.55 16 12 C 0.07 1.78 3.19 30.69 0.10 1.88 16 13 H 0.05 1.41 6.23 -2.39 -0.01 1.39 16 14 C -0.14 -2.97 9.57 71.98 0.69 -2.28 16 15 O -0.37 -12.41 9.93 -148.95 -1.48 -13.89 16 16 C 0.11 3.34 0.84 -10.17 -0.01 3.33 16 17 C -0.15 -5.68 5.87 31.56 0.19 -5.49 16 18 C 0.20 10.05 5.38 86.77 0.47 10.52 16 19 N -0.62 -31.18 3.40 -692.76 -2.36 -33.54 16 20 C -0.24 -12.99 10.28 84.03 0.86 -12.13 16 21 H 0.09 4.59 7.83 -2.91 -0.02 4.57 16 22 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 23 N -0.96 -58.50 10.31 21.65 0.22 -58.28 16 24 Si 0.98 45.70 29.55 68.60 2.03 47.72 16 25 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 26 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 27 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 28 C 0.15 5.45 6.42 86.55 0.56 6.01 16 29 C 0.09 2.01 4.23 86.01 0.36 2.37 16 30 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.06 1.64 7.50 -2.39 -0.02 1.62 16 33 H 0.26 1.06 8.06 -2.91 -0.02 1.04 16 34 H 0.10 2.31 7.06 -2.39 -0.02 2.30 16 35 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.06 2.40 6.07 -2.39 -0.01 2.39 16 40 H 0.07 2.57 7.82 -2.39 -0.02 2.55 16 41 H 0.00 0.12 7.39 -2.38 -0.02 0.10 16 42 H 0.01 0.30 7.50 -2.39 -0.02 0.28 16 43 H 0.24 14.61 8.31 -92.71 -0.77 13.84 16 44 H 0.06 1.93 7.99 -2.39 -0.02 1.91 16 45 H 0.06 2.03 8.14 -2.39 -0.02 2.02 16 46 H 0.10 2.04 4.89 -2.39 -0.01 2.03 16 47 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -79.23 368.85 1.64 -77.58 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.30 Total: 13.83 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: 8.42 Total: 24.69 kcal Atomic # 7 Polarization: -124.71 SS G_CDS: -7.56 Total: -132.27 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -1.55 Total: -31.56 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -79.23 1.64 -77.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071248663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.003 kcal (2) G-P(sol) polarization free energy of solvation -79.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds