Wall clock time and date at job start Tue Mar 31 2020 17:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32176 * 119.13511 * 2 1 4 4 C 1.32367 * 120.60099 * 180.02562 * 3 2 1 5 5 C 1.47504 * 120.50851 * 179.97438 * 4 3 2 6 6 O 1.21590 * 119.99941 * 180.02562 * 5 4 3 7 7 N 1.34783 * 119.99683 * 359.97438 * 5 4 3 8 8 C 1.46498 * 119.99553 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.50200 * 324.93855 * 8 7 5 10 10 C 1.53104 * 109.51604 * 204.86911 * 8 7 5 11 11 C 1.53040 * 109.50409 * 178.68635 * 10 8 7 12 12 C 1.53192 * 109.33834 * 61.35162 * 11 10 8 13 13 H 1.09000 * 109.58613 * 65.13444 * 12 11 10 14 14 C 1.53003 * 109.58622 * 185.56013 * 12 11 10 15 15 N 1.46930 * 108.77613 * 305.34804 * 12 11 10 16 16 C 1.36934 * 120.62925 * 233.59084 * 15 12 11 17 17 H 1.07997 * 120.00083 * 29.05171 * 16 15 12 18 18 C 1.38818 * 120.00008 * 209.05389 * 16 15 12 19 19 N 1.31620 * 119.99342 * 15.05203 * 18 16 15 20 20 Si 1.86795 * 120.00018 * 195.05059 * 18 16 15 21 21 H 1.48501 * 109.47045 * 90.00300 * 20 18 16 22 22 H 1.48505 * 109.46933 * 210.00082 * 20 18 16 23 23 H 1.48491 * 109.47501 * 330.00079 * 20 18 16 24 24 C 1.46918 * 118.73744 * 53.60536 * 15 12 11 25 25 C 1.46679 * 118.98077 * 0.25195 * 4 3 2 26 26 O 1.21857 * 120.77889 * 179.74680 * 25 4 3 27 27 N 1.35156 * 118.43002 * 359.44782 * 25 4 3 28 28 H 0.97000 * 120.36668 * 180.25711 * 27 25 4 29 29 C 1.34895 * 119.26434 * 0.57510 * 27 25 4 30 30 C 1.50700 * 119.50111 * 179.70804 * 29 27 25 31 31 H 1.08990 * 109.47344 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.47040 * 120.00051 * 1 2 3 33 33 H 1.09008 * 109.46580 * 239.99332 * 1 2 3 34 34 H 0.96994 * 120.00108 * 359.97438 * 7 5 4 35 35 H 1.09001 * 109.50297 * 58.66220 * 10 8 7 36 36 H 1.08999 * 109.44846 * 298.68383 * 10 8 7 37 37 H 1.08996 * 109.49798 * 301.38331 * 11 10 8 38 38 H 1.09003 * 109.49853 * 181.31698 * 11 10 8 39 39 H 1.08998 * 109.47080 * 59.99740 * 14 12 11 40 40 H 1.08997 * 109.47262 * 179.97438 * 14 12 11 41 41 H 1.08999 * 109.46886 * 300.00316 * 14 12 11 42 42 H 0.97004 * 119.99493 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.58686 * 66.18205 * 24 15 12 44 44 H 1.09005 * 109.58821 * 186.45892 * 24 15 12 45 45 H 1.08997 * 109.46950 * 269.97635 * 30 29 27 46 46 H 1.09002 * 109.46716 * 29.97351 * 30 29 27 47 47 H 1.08996 * 109.47484 * 149.97235 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1505 1.1545 0.0000 4 6 3.4738 1.1884 -0.0005 5 6 4.1898 2.4779 -0.0011 6 8 5.4056 2.4983 -0.0020 7 7 3.4965 3.6337 -0.0016 8 6 4.2077 4.9145 -0.0016 9 1 5.1194 4.8245 0.5890 10 6 3.3111 5.9974 0.6047 11 6 4.0662 7.3282 0.6346 12 6 4.4234 7.7411 -0.7967 13 1 3.5106 7.9423 -1.3575 14 6 5.2968 8.9970 -0.7654 15 7 5.1620 6.6432 -1.4353 16 6 6.3820 6.8676 -2.0152 17 1 7.0214 7.6534 -1.6410 18 6 6.7970 6.0851 -3.0840 19 7 5.9264 5.3388 -3.7302 20 14 8.5907 6.0913 -3.6052 21 1 9.3244 5.0323 -2.8666 22 1 8.6831 5.8316 -5.0645 23 1 9.1907 7.4146 -3.2990 24 6 4.5665 5.3001 -1.4402 25 6 4.2170 -0.0761 -0.0067 26 8 5.4356 -0.0832 -0.0120 27 7 3.5185 -1.2331 -0.0002 28 1 3.9815 -2.0855 -0.0003 29 6 2.1703 -1.1894 -0.0002 30 6 1.3860 -2.4763 0.0003 31 1 -0.3633 1.0276 0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 -0.3633 -0.5140 0.8900 34 1 2.5266 3.6175 -0.0020 35 1 3.0342 5.7141 1.6202 36 1 2.4109 6.1041 -0.0006 37 1 4.9792 7.2154 1.2193 38 1 3.4363 8.0938 1.0877 39 1 6.2111 8.7899 -0.2092 40 1 5.5502 9.2888 -1.7846 41 1 4.7518 9.8066 -0.2800 42 1 6.2164 4.7917 -4.4769 43 1 3.6654 5.3022 -2.0534 44 1 5.2822 4.5845 -1.8449 45 1 1.1966 -2.7867 -1.0272 46 1 1.9573 -3.2496 0.5140 47 1 0.4372 -2.3235 0.5145 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071610249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:00 Heat of formation + Delta-G solvation = -10.379849 kcal Electronic energy + Delta-G solvation = -29635.475335 eV Core-core repulsion = 25626.290159 eV Total energy + Delta-G solvation = -4009.185176 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.85378 -39.19240 -38.04483 -37.41846 -35.54656 -34.22447 -33.32980 -32.68699 -30.64804 -29.76861 -29.32121 -27.07326 -25.80324 -24.87107 -24.81521 -23.16237 -22.13357 -20.88767 -20.05995 -19.26556 -18.77350 -18.36892 -16.77320 -16.39897 -16.28610 -15.95137 -15.30580 -14.95467 -14.41069 -14.30069 -14.06067 -13.93974 -13.68821 -13.57792 -13.50560 -13.34573 -13.26483 -13.10148 -12.63062 -12.31581 -12.26956 -12.02477 -11.76521 -11.51694 -11.33490 -11.30506 -11.02452 -10.77419 -10.62459 -10.41431 -10.29723 -10.15696 -9.96594 -9.85090 -9.58907 -9.33916 -9.17827 -8.41568 -8.30014 -8.11448 -6.50571 -5.62856 -3.07419 0.01420 1.53758 2.23693 2.85122 3.43293 3.51827 3.57651 3.59935 3.74470 3.84402 4.04315 4.14866 4.40618 4.64100 4.76588 4.94183 5.02016 5.16620 5.28200 5.30818 5.46229 5.48436 5.55500 5.64416 5.69061 5.78930 5.86031 6.07575 6.12692 6.20487 6.22443 6.36961 6.41596 6.48667 6.54834 6.61984 6.73078 6.86317 7.08073 7.13715 7.22309 7.34418 7.46121 7.65714 7.88369 7.96713 8.10040 8.61270 8.76624 9.35626 10.00158 10.55161 11.44958 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013954 B = 0.003441 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.146453 B = 8135.291961 C = 9410.139211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.031 4.031 3 N -0.356 5.356 4 C 0.024 3.976 5 C 0.573 3.427 6 O -0.498 6.498 7 N -0.700 5.700 8 C 0.117 3.883 9 H 0.083 0.917 10 C -0.115 4.115 11 C -0.126 4.126 12 C 0.165 3.835 13 H 0.025 0.975 14 C -0.136 4.136 15 N -0.583 5.583 16 C -0.252 4.252 17 H 0.071 0.929 18 C 0.006 3.994 19 N -0.900 5.900 20 Si 0.900 3.100 21 H -0.286 1.286 22 H -0.293 1.293 23 H -0.279 1.279 24 C 0.167 3.833 25 C 0.494 3.506 26 O -0.478 6.478 27 N -0.588 5.588 28 H 0.419 0.581 29 C 0.146 3.854 30 C -0.129 4.129 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.400 0.600 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.037 0.963 42 H 0.252 0.748 43 H 0.017 0.983 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.080 0.920 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.432 -14.304 9.889 23.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.157 4.157 3 N -0.073 5.073 4 C -0.146 4.146 5 C 0.355 3.645 6 O -0.370 6.370 7 N -0.352 5.352 8 C 0.012 3.988 9 H 0.101 0.899 10 C -0.153 4.153 11 C -0.166 4.166 12 C 0.058 3.942 13 H 0.043 0.957 14 C -0.194 4.194 15 N -0.307 5.307 16 C -0.382 4.382 17 H 0.088 0.912 18 C -0.193 4.193 19 N -0.544 5.544 20 Si 0.730 3.270 21 H -0.213 1.213 22 H -0.219 1.219 23 H -0.205 1.205 24 C 0.040 3.960 25 C 0.285 3.715 26 O -0.348 6.348 27 N -0.224 5.224 28 H 0.259 0.741 29 C 0.031 3.969 30 C -0.187 4.187 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.234 0.766 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.036 0.964 44 H 0.114 0.886 45 H 0.115 0.885 46 H 0.099 0.901 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.245 -13.556 9.725 22.600 hybrid contribution 0.950 -1.454 -0.414 1.786 sum -14.295 -15.010 9.311 22.723 Atomic orbital electron populations 1.20507 0.87086 1.04441 1.02040 1.20109 0.97816 0.85682 1.12088 1.67571 1.08499 1.29388 1.01893 1.24178 0.88752 0.94253 1.07404 1.17005 0.86701 0.82067 0.78686 1.90937 1.12208 1.86171 1.47663 1.45827 1.10225 1.05274 1.73887 1.22050 0.94781 0.79870 1.02090 0.89902 1.21681 0.98537 0.95632 0.99492 1.22049 0.99509 0.95293 0.99730 1.20490 0.93939 0.88992 0.90740 0.95744 1.21800 0.99549 0.96062 1.01953 1.44027 1.19609 1.01879 1.65159 1.19147 0.92424 1.17652 1.08939 0.91188 1.25068 0.97705 1.00588 0.95911 1.69999 1.32177 1.30834 1.21410 0.86332 0.85469 0.77887 0.77330 1.21272 1.21902 1.20477 1.21107 0.97730 0.88172 0.88973 1.19146 0.88510 0.83977 0.79839 1.91084 1.11400 1.85148 1.47151 1.43740 1.06343 1.11947 1.60401 0.74060 1.21472 0.83571 0.98913 0.92942 1.21205 1.00839 0.91843 1.04792 0.89940 0.90921 0.90965 0.76552 0.93012 0.92184 0.92068 0.92704 0.92783 0.92052 0.94391 0.93796 0.96444 0.88604 0.88491 0.90085 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 8.83 36.01 0.32 -0.15 16 2 C -0.03 -0.30 6.70 -83.18 -0.56 -0.85 16 3 N -0.36 -4.78 9.55 -4.84 -0.05 -4.82 16 4 C 0.02 0.40 6.96 -80.45 -0.56 -0.16 16 5 C 0.57 11.89 7.77 -12.48 -0.10 11.80 16 6 O -0.50 -12.76 15.17 -15.19 -0.23 -12.99 16 7 N -0.70 -13.06 5.07 -54.71 -0.28 -13.34 16 8 C 0.12 2.45 2.60 -67.78 -0.18 2.27 16 9 H 0.08 1.95 7.58 -51.93 -0.39 1.56 16 10 C -0.12 -1.97 5.36 -26.66 -0.14 -2.12 16 11 C -0.13 -2.23 5.37 -26.61 -0.14 -2.38 16 12 C 0.16 3.50 3.50 -67.60 -0.24 3.26 16 13 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 14 C -0.14 -2.64 7.95 37.16 0.30 -2.34 16 15 N -0.58 -15.10 2.99 -164.77 -0.49 -15.60 16 16 C -0.25 -7.15 8.61 -15.06 -0.13 -7.28 16 17 H 0.07 1.93 6.20 -52.49 -0.33 1.60 16 18 C 0.01 0.18 4.96 -17.43 -0.09 0.10 16 19 N -0.90 -27.74 11.14 55.49 0.62 -27.12 16 20 Si 0.90 23.34 29.58 -169.99 -5.03 18.31 16 21 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 22 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.17 4.27 4.87 -3.71 -0.02 4.25 16 25 C 0.49 8.01 7.93 -12.68 -0.10 7.91 16 26 O -0.48 -9.90 16.40 -15.43 -0.25 -10.16 16 27 N -0.59 -5.87 5.29 -9.45 -0.05 -5.92 16 28 H 0.42 2.88 8.81 -40.82 -0.36 2.52 16 29 C 0.15 1.11 6.78 -81.98 -0.56 0.55 16 30 C -0.13 -0.32 9.59 36.01 0.35 0.03 16 31 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 32 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 33 H 0.07 0.25 7.36 -51.92 -0.38 -0.13 16 34 H 0.40 6.28 7.97 -40.82 -0.33 5.96 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 1.07 7.40 -51.93 -0.38 0.68 16 40 H 0.06 1.28 7.66 -51.93 -0.40 0.88 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.10 2.90 6.06 -51.93 -0.31 2.59 16 45 H 0.10 0.15 8.14 -51.93 -0.42 -0.28 16 46 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 47 H 0.10 0.11 6.44 -51.93 -0.33 -0.23 16 LS Contribution 377.51 15.07 5.69 5.69 Total: -1.00 -38.68 377.51 -8.91 -47.60 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -7.00 Total: 3.47 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: -1.84 Total: 14.88 kcal Atomic # 7 Polarization: -66.55 SS G_CDS: -0.25 Total: -66.80 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.48 Total: -23.15 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.03 Total: 18.31 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.68 -8.91 -47.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071610249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.216 kcal (2) G-P(sol) polarization free energy of solvation -38.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds