Wall clock time and date at job start Tue Mar 31 2020 17:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32176 * 119.13511 * 2 1 4 4 C 1.32367 * 120.60099 * 180.02562 * 3 2 1 5 5 C 1.47504 * 120.50851 * 179.97438 * 4 3 2 6 6 O 1.21590 * 119.99941 * 180.02562 * 5 4 3 7 7 N 1.34783 * 119.99683 * 359.97438 * 5 4 3 8 8 C 1.46498 * 119.99553 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.50200 * 324.93855 * 8 7 5 10 10 C 1.53104 * 109.51604 * 204.86911 * 8 7 5 11 11 C 1.53040 * 109.50409 * 178.68635 * 10 8 7 12 12 C 1.53192 * 109.33834 * 61.35162 * 11 10 8 13 13 H 1.09000 * 109.58613 * 65.13444 * 12 11 10 14 14 C 1.53003 * 109.58622 * 185.56013 * 12 11 10 15 15 N 1.46930 * 108.77613 * 305.34804 * 12 11 10 16 16 C 1.36934 * 120.62925 * 233.59084 * 15 12 11 17 17 H 1.07997 * 120.00083 * 29.05171 * 16 15 12 18 18 C 1.38818 * 120.00008 * 209.05389 * 16 15 12 19 19 N 1.31620 * 119.99342 * 15.05203 * 18 16 15 20 20 Si 1.86795 * 120.00018 * 195.05059 * 18 16 15 21 21 H 1.48501 * 109.47045 * 90.00300 * 20 18 16 22 22 H 1.48505 * 109.46933 * 210.00082 * 20 18 16 23 23 H 1.48491 * 109.47501 * 330.00079 * 20 18 16 24 24 C 1.46918 * 118.73744 * 53.60536 * 15 12 11 25 25 C 1.46679 * 118.98077 * 0.25195 * 4 3 2 26 26 O 1.21857 * 120.77889 * 179.74680 * 25 4 3 27 27 N 1.35156 * 118.43002 * 359.44782 * 25 4 3 28 28 H 0.97000 * 120.36668 * 180.25711 * 27 25 4 29 29 C 1.34895 * 119.26434 * 0.57510 * 27 25 4 30 30 C 1.50700 * 119.50111 * 179.70804 * 29 27 25 31 31 H 1.08990 * 109.47344 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.47040 * 120.00051 * 1 2 3 33 33 H 1.09008 * 109.46580 * 239.99332 * 1 2 3 34 34 H 0.96994 * 120.00108 * 359.97438 * 7 5 4 35 35 H 1.09001 * 109.50297 * 58.66220 * 10 8 7 36 36 H 1.08999 * 109.44846 * 298.68383 * 10 8 7 37 37 H 1.08996 * 109.49798 * 301.38331 * 11 10 8 38 38 H 1.09003 * 109.49853 * 181.31698 * 11 10 8 39 39 H 1.08998 * 109.47080 * 59.99740 * 14 12 11 40 40 H 1.08997 * 109.47262 * 179.97438 * 14 12 11 41 41 H 1.08999 * 109.46886 * 300.00316 * 14 12 11 42 42 H 0.97004 * 119.99493 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.58686 * 66.18205 * 24 15 12 44 44 H 1.09005 * 109.58821 * 186.45892 * 24 15 12 45 45 H 1.08997 * 109.46950 * 269.97635 * 30 29 27 46 46 H 1.09002 * 109.46716 * 29.97351 * 30 29 27 47 47 H 1.08996 * 109.47484 * 149.97235 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1505 1.1545 0.0000 4 6 3.4738 1.1884 -0.0005 5 6 4.1898 2.4779 -0.0011 6 8 5.4056 2.4983 -0.0020 7 7 3.4965 3.6337 -0.0016 8 6 4.2077 4.9145 -0.0016 9 1 5.1194 4.8245 0.5890 10 6 3.3111 5.9974 0.6047 11 6 4.0662 7.3282 0.6346 12 6 4.4234 7.7411 -0.7967 13 1 3.5106 7.9423 -1.3575 14 6 5.2968 8.9970 -0.7654 15 7 5.1620 6.6432 -1.4353 16 6 6.3820 6.8676 -2.0152 17 1 7.0214 7.6534 -1.6410 18 6 6.7970 6.0851 -3.0840 19 7 5.9264 5.3388 -3.7302 20 14 8.5907 6.0913 -3.6052 21 1 9.3244 5.0323 -2.8666 22 1 8.6831 5.8316 -5.0645 23 1 9.1907 7.4146 -3.2990 24 6 4.5665 5.3001 -1.4402 25 6 4.2170 -0.0761 -0.0067 26 8 5.4356 -0.0832 -0.0120 27 7 3.5185 -1.2331 -0.0002 28 1 3.9815 -2.0855 -0.0003 29 6 2.1703 -1.1894 -0.0002 30 6 1.3860 -2.4763 0.0003 31 1 -0.3633 1.0276 0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 -0.3633 -0.5140 0.8900 34 1 2.5266 3.6175 -0.0020 35 1 3.0342 5.7141 1.6202 36 1 2.4109 6.1041 -0.0006 37 1 4.9792 7.2154 1.2193 38 1 3.4363 8.0938 1.0877 39 1 6.2111 8.7899 -0.2092 40 1 5.5502 9.2888 -1.7846 41 1 4.7518 9.8066 -0.2800 42 1 6.2164 4.7917 -4.4769 43 1 3.6654 5.3022 -2.0534 44 1 5.2822 4.5845 -1.8449 45 1 1.1966 -2.7867 -1.0272 46 1 1.9573 -3.2496 0.5140 47 1 0.4372 -2.3235 0.5145 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071610249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:59 Heat of formation + Delta-G solvation = -41.440469 kcal Electronic energy + Delta-G solvation = -29636.822225 eV Core-core repulsion = 25626.290159 eV Total energy + Delta-G solvation = -4010.532066 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.88690 -40.77667 -39.30798 -39.02482 -36.59727 -35.96333 -34.66105 -34.12958 -32.20601 -31.72453 -29.99374 -28.15166 -27.54641 -26.64424 -25.59202 -24.43775 -23.87658 -22.32538 -21.63627 -20.99630 -19.86452 -19.47918 -18.33243 -18.01799 -17.40171 -17.32043 -16.96542 -16.66913 -15.91760 -15.68294 -15.44502 -15.12205 -15.05957 -14.96135 -14.92813 -14.46971 -14.12619 -14.07936 -13.83832 -13.77493 -13.51121 -13.08472 -12.81646 -12.75325 -12.74283 -12.71126 -12.57537 -12.42125 -12.34931 -12.28013 -12.10567 -11.98123 -11.66608 -11.46684 -11.25737 -11.12550 -10.55010 -10.53531 -10.10269 -9.09273 -8.63264 -7.85374 -5.31748 -0.97662 0.49916 1.23091 1.37234 1.44784 1.48986 1.57481 2.15452 2.49400 2.56617 2.93460 3.00718 3.31580 3.41286 3.67284 3.75762 3.90885 4.01335 4.10060 4.27001 4.39630 4.55215 4.60892 4.65729 4.70914 4.72236 4.82295 4.90415 4.91764 4.96567 5.01905 5.06947 5.07503 5.19089 5.20789 5.24571 5.31179 5.33820 5.48142 5.53803 5.56433 5.62364 5.70086 5.80403 6.33484 6.41548 6.55271 6.68521 7.14551 7.28921 7.89808 8.39086 9.19592 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013954 B = 0.003441 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.146453 B = 8135.291961 C = 9410.139211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.050 4.050 3 N -0.337 5.337 4 C -0.063 4.063 5 C 0.569 3.431 6 O -0.568 6.568 7 N -0.690 5.690 8 C 0.130 3.870 9 H 0.049 0.951 10 C -0.105 4.105 11 C -0.117 4.117 12 C 0.153 3.847 13 H 0.025 0.975 14 C -0.129 4.129 15 N -0.603 5.603 16 C -0.249 4.249 17 H 0.078 0.922 18 C -0.057 4.057 19 N -0.935 5.935 20 Si 0.956 3.044 21 H -0.301 1.301 22 H -0.292 1.292 23 H -0.256 1.256 24 C 0.181 3.819 25 C 0.487 3.513 26 O -0.545 6.545 27 N -0.563 5.563 28 H 0.438 0.562 29 C 0.199 3.801 30 C -0.132 4.132 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.415 0.585 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.051 0.949 38 H 0.100 0.900 39 H 0.044 0.956 40 H 0.038 0.962 41 H 0.081 0.919 42 H 0.243 0.757 43 H -0.002 1.002 44 H 0.039 0.961 45 H 0.125 0.875 46 H 0.106 0.894 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.798 -16.006 11.760 28.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.181 4.181 3 N -0.055 5.055 4 C -0.224 4.224 5 C 0.355 3.645 6 O -0.446 6.446 7 N -0.342 5.342 8 C 0.024 3.976 9 H 0.067 0.933 10 C -0.143 4.143 11 C -0.157 4.157 12 C 0.048 3.952 13 H 0.042 0.958 14 C -0.186 4.186 15 N -0.327 5.327 16 C -0.379 4.379 17 H 0.095 0.905 18 C -0.252 4.252 19 N -0.582 5.582 20 Si 0.785 3.215 21 H -0.229 1.229 22 H -0.219 1.219 23 H -0.180 1.180 24 C 0.054 3.946 25 C 0.282 3.718 26 O -0.422 6.422 27 N -0.198 5.198 28 H 0.281 0.719 29 C 0.080 3.920 30 C -0.188 4.188 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.252 0.748 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.118 0.882 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.100 0.900 42 H 0.052 0.948 43 H 0.016 0.984 44 H 0.057 0.943 45 H 0.143 0.857 46 H 0.124 0.876 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.637 -15.193 11.626 27.416 hybrid contribution 1.931 -1.250 -0.962 2.494 sum -17.706 -16.444 10.663 26.412 Atomic orbital electron populations 1.20720 0.83363 1.04878 1.04932 1.21113 1.00045 0.85107 1.11840 1.67452 1.06895 1.31923 0.99240 1.23080 0.89763 0.92500 1.17012 1.17635 0.86235 0.83821 0.76787 1.90868 1.15208 1.87430 1.51065 1.45621 1.10715 1.04306 1.73544 1.21619 0.95215 0.82276 0.98458 0.93310 1.21653 0.97790 0.93665 1.01203 1.21964 1.00083 0.96620 0.96993 1.20837 0.93671 0.88308 0.92409 0.95760 1.21731 0.99475 0.96450 1.00958 1.44331 1.19631 1.03326 1.65441 1.19522 0.93672 1.16764 1.07941 0.90467 1.25829 1.01228 1.01278 0.96827 1.70172 1.33700 1.32214 1.22089 0.85416 0.81311 0.78238 0.76537 1.22913 1.21887 1.18013 1.20731 0.95073 0.87379 0.91425 1.19103 0.87846 0.85298 0.79526 1.91032 1.13937 1.86168 1.51100 1.43692 1.07567 1.11261 1.57253 0.71855 1.22603 0.82330 1.01305 0.85756 1.21624 1.01355 0.88713 1.07129 0.90986 0.88251 0.87604 0.74751 0.89639 0.90628 0.92999 0.88152 0.93640 0.94270 0.90020 0.94839 0.98376 0.94296 0.85667 0.87575 0.84958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 8.83 71.24 0.63 0.14 16 2 C -0.05 -0.79 6.70 42.03 0.28 -0.50 16 3 N -0.34 -8.95 9.55 -169.23 -1.62 -10.57 16 4 C -0.06 -2.29 6.96 43.71 0.30 -1.99 16 5 C 0.57 26.22 7.77 86.69 0.67 26.89 16 6 O -0.57 -32.92 15.17 15.58 0.24 -32.68 16 7 N -0.69 -27.70 5.07 -445.25 -2.26 -29.96 16 8 C 0.13 5.80 2.60 45.09 0.12 5.91 16 9 H 0.05 2.50 7.58 -2.39 -0.02 2.48 16 10 C -0.11 -3.48 5.36 30.64 0.16 -3.31 16 11 C -0.12 -3.93 5.37 30.67 0.16 -3.76 16 12 C 0.15 6.42 3.50 44.97 0.16 6.58 16 13 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 14 C -0.13 -4.85 7.95 71.98 0.57 -4.28 16 15 N -0.60 -32.69 2.99 -675.22 -2.02 -34.71 16 16 C -0.25 -14.77 8.61 84.04 0.72 -14.04 16 17 H 0.08 4.38 6.20 -2.91 -0.02 4.36 16 18 C -0.06 -3.54 4.96 84.86 0.42 -3.12 16 19 N -0.94 -61.91 11.14 21.65 0.24 -61.66 16 20 Si 0.96 50.66 29.58 68.60 2.03 52.68 16 21 H -0.30 -16.56 7.11 99.48 0.71 -15.85 16 22 H -0.29 -15.32 7.11 99.48 0.71 -14.62 16 23 H -0.26 -12.44 7.11 99.48 0.71 -11.74 16 24 C 0.18 9.98 4.87 86.37 0.42 10.40 16 25 C 0.49 16.85 7.93 86.39 0.68 17.54 16 26 O -0.55 -25.02 16.40 14.73 0.24 -24.78 16 27 N -0.56 -10.30 5.29 -301.76 -1.60 -11.90 16 28 H 0.44 4.99 8.81 -92.71 -0.82 4.17 16 29 C 0.20 2.16 6.78 41.61 0.28 2.44 16 30 C -0.13 0.31 9.59 71.24 0.68 0.99 16 31 H 0.07 0.67 8.10 -2.39 -0.02 0.65 16 32 H 0.10 0.15 8.08 -2.39 -0.02 0.13 16 33 H 0.11 -0.01 7.36 -2.38 -0.02 -0.02 16 34 H 0.42 13.57 7.97 -92.71 -0.74 12.83 16 35 H 0.09 2.32 8.14 -2.39 -0.02 2.31 16 36 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.04 1.77 7.40 -2.39 -0.02 1.75 16 40 H 0.04 1.62 7.66 -2.39 -0.02 1.60 16 41 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.24 15.79 8.31 -92.71 -0.77 15.02 16 43 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 44 H 0.04 2.59 6.06 -2.38 -0.01 2.57 16 45 H 0.13 -0.62 8.14 -2.39 -0.02 -0.64 16 46 H 0.11 -0.56 8.14 -2.39 -0.02 -0.58 16 47 H 0.13 -0.87 6.44 -2.39 -0.02 -0.88 16 Total: -1.00 -101.29 377.51 1.00 -100.29 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -0.54 Total: 13.40 kcal Atomic # 6 Polarization: 33.61 SS G_CDS: 6.28 Total: 39.89 kcal Atomic # 7 Polarization: -141.55 SS G_CDS: -7.25 Total: -148.80 kcal Atomic # 8 Polarization: -57.94 SS G_CDS: 0.48 Total: -57.47 kcal Atomic # 14 Polarization: 50.66 SS G_CDS: 2.03 Total: 52.68 kcal Total: -101.29 1.00 -100.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071610249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.850 kcal (2) G-P(sol) polarization free energy of solvation -101.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds