Wall clock time and date at job start Tue Mar 31 2020 19:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.35035 * 126.38093 * 2 1 4 4 H 0.97003 * 124.88943 * 0.02562 * 3 2 1 5 5 N 1.28469 * 110.23087 * 180.02562 * 3 2 1 6 6 C 1.31808 * 110.07014 * 359.97438 * 5 3 2 7 7 C 1.47716 * 126.51997 * 180.02562 * 6 5 3 8 8 O 1.21568 * 120.00408 * 186.50404 * 7 6 5 9 9 N 1.34778 * 119.99598 * 6.50549 * 7 6 5 10 10 C 1.46836 * 120.41257 * 6.35609 * 9 7 6 11 11 C 1.53365 * 109.25100 * 127.75456 * 10 9 7 12 12 C 1.52791 * 108.82042 * 53.83315 * 11 10 9 13 13 H 1.09000 * 109.34015 * 57.15393 * 12 11 10 14 14 O 1.42601 * 111.11566 * 177.47364 * 12 11 10 15 15 C 1.43143 * 113.63123 * 183.61094 * 14 12 11 16 16 C 1.53184 * 109.74346 * 298.31521 * 15 14 12 17 17 N 1.47354 * 108.80498 * 51.20873 * 16 15 14 18 18 C 1.36939 * 121.30747 * 130.03384 * 17 16 15 19 19 H 1.08003 * 119.99964 * 207.67908 * 18 17 16 20 20 C 1.38816 * 120.00128 * 27.67821 * 18 17 16 21 21 N 1.31617 * 119.99747 * 15.17982 * 20 18 17 22 22 Si 1.86793 * 120.00114 * 195.18302 * 20 18 17 23 23 H 1.48502 * 109.47164 * 89.99908 * 22 20 18 24 24 H 1.48496 * 109.47256 * 209.99862 * 22 20 18 25 25 H 1.48500 * 109.47092 * 329.99927 * 22 20 18 26 26 C 1.46874 * 117.38526 * 309.76180 * 17 16 15 27 27 H 1.08998 * 109.65695 * 292.34490 * 26 17 16 28 28 C 1.47294 * 119.86941 * 185.92070 * 9 7 6 29 29 C 1.35360 * 126.38679 * 180.32554 * 2 1 3 30 30 C 1.50697 * 127.25226 * 359.97438 * 29 2 1 31 31 H 1.08995 * 109.47133 * 89.97744 * 1 2 3 32 32 H 1.09003 * 109.47132 * 209.97529 * 1 2 3 33 33 H 1.08998 * 109.47449 * 329.97568 * 1 2 3 34 34 H 1.09002 * 109.50898 * 7.82460 * 10 9 7 35 35 H 1.08998 * 109.54780 * 247.71060 * 10 9 7 36 36 H 1.09000 * 109.57809 * 294.03136 * 11 10 9 37 37 H 1.09001 * 109.58463 * 173.63404 * 11 10 9 38 38 H 1.09001 * 109.42461 * 58.39779 * 15 14 12 39 39 H 1.08999 * 109.42364 * 178.28272 * 15 14 12 40 40 H 1.09002 * 109.58812 * 291.40939 * 16 15 14 41 41 H 1.09002 * 109.58622 * 171.00259 * 16 15 14 42 42 H 0.97005 * 119.99902 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.22759 * 113.24115 * 28 9 7 44 44 H 1.09003 * 110.31853 * 352.51318 * 28 9 7 45 45 H 1.08999 * 109.47254 * 270.19094 * 30 29 2 46 46 H 1.09006 * 109.46926 * 30.18882 * 30 29 2 47 47 H 1.08999 * 109.47426 * 150.18954 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3080 1.0872 0.0000 4 1 1.9965 2.0058 0.0004 5 7 3.5420 0.7298 -0.0005 6 6 3.6321 -0.5852 -0.0004 7 6 4.8765 -1.3810 -0.0003 8 8 4.8251 -2.5898 -0.1194 9 7 6.0690 -0.7670 0.1318 10 6 6.1367 0.6722 0.4151 11 6 7.0347 0.9054 1.6363 12 6 8.3850 0.2340 1.3906 13 1 8.8240 0.6305 0.4752 14 8 9.2809 0.4703 2.4746 15 6 10.5910 -0.0665 2.2636 16 6 10.5084 -1.5886 2.1123 17 7 9.4897 -1.9105 1.0974 18 6 9.7592 -2.7704 0.0664 19 1 9.2325 -2.6713 -0.8712 20 6 10.7096 -3.7696 0.2264 21 7 11.1331 -4.0881 1.4311 22 14 11.3873 -4.6619 -1.2682 23 1 12.5869 -3.9452 -1.7708 24 1 11.7614 -6.0482 -0.8896 25 1 10.3523 -4.7016 -2.3324 26 6 8.1719 -1.2775 1.2386 27 1 7.6705 -1.6681 2.1240 28 6 7.3130 -1.5447 0.0010 29 6 2.3100 -1.0897 -0.0062 30 6 1.8855 -2.5356 -0.0139 31 1 -0.3633 0.0004 -1.0276 32 1 -0.3633 -0.8902 0.5135 33 1 -0.3634 0.8897 0.5142 34 1 5.1354 1.0499 0.6222 35 1 6.5517 1.1944 -0.4469 36 1 6.5674 0.4732 2.5212 37 1 7.1803 1.9756 1.7836 38 1 11.0181 0.3651 1.3583 39 1 11.2248 0.1785 3.1159 40 1 10.2281 -2.0359 3.0659 41 1 11.4760 -1.9773 1.7946 42 1 11.7975 -4.7860 1.5429 43 1 7.8459 -1.2217 -0.8933 44 1 7.0885 -2.6091 -0.0681 45 1 1.7802 -2.8888 1.0119 46 1 0.9306 -2.6312 -0.5308 47 1 2.6385 -3.1327 -0.5283 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074196991.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:16 Heat of formation + Delta-G solvation = 34.650495 kcal Electronic energy + Delta-G solvation = -30263.096315 eV Core-core repulsion = 26255.863801 eV Total energy + Delta-G solvation = -4007.232514 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.90011 -39.82306 -38.35626 -35.98122 -34.65412 -33.67992 -32.77402 -31.53911 -31.30376 -29.80382 -28.58807 -27.03793 -26.32950 -25.47592 -23.82106 -23.43807 -21.86735 -21.03233 -20.16685 -19.62740 -18.77637 -17.82349 -16.81875 -16.50868 -16.14140 -15.67442 -15.30005 -15.00592 -14.84648 -14.39196 -14.11712 -13.91759 -13.64513 -13.53269 -13.30134 -13.11910 -12.99310 -12.92671 -12.80870 -12.60950 -12.51840 -12.36612 -12.04744 -11.69946 -11.23543 -11.10204 -10.91151 -10.83315 -10.61337 -10.33073 -10.16859 -10.13648 -9.92235 -9.66255 -9.53464 -9.37678 -8.91448 -8.81181 -8.49393 -8.23115 -6.67934 -5.79377 -3.25075 1.50726 1.94829 2.62699 3.25095 3.39092 3.46143 3.47756 3.54538 4.24597 4.41397 4.44450 4.48779 4.67201 5.03013 5.09971 5.12096 5.15251 5.34312 5.38340 5.45507 5.49883 5.56160 5.59047 5.73500 5.78112 5.84083 5.84689 5.96581 6.00114 6.06738 6.13480 6.17197 6.23223 6.34867 6.39750 6.49374 6.54953 6.72627 6.75910 6.90117 6.97526 7.18574 7.54659 7.62081 7.76444 7.80752 7.95699 8.37033 8.44572 9.14626 9.77781 10.36276 11.28690 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015593 B = 0.003535 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.281580 B = 7917.842605 C = 9246.837506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.007 3.993 3 N -0.386 5.386 4 H 0.442 0.558 5 N -0.259 5.259 6 C 0.003 3.997 7 C 0.596 3.404 8 O -0.527 6.527 9 N -0.597 5.597 10 C 0.094 3.906 11 C -0.122 4.122 12 C 0.077 3.923 13 H 0.051 0.949 14 O -0.390 6.390 15 C 0.039 3.961 16 C 0.143 3.857 17 N -0.588 5.588 18 C -0.257 4.257 19 H 0.072 0.928 20 C 0.006 3.994 21 N -0.902 5.902 22 Si 0.904 3.096 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.277 1.277 26 C 0.137 3.863 27 H 0.036 0.964 28 C 0.125 3.875 29 C -0.143 4.143 30 C -0.081 4.081 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.126 0.874 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.040 0.960 39 H 0.080 0.920 40 H 0.028 0.972 41 H 0.094 0.906 42 H 0.255 0.745 43 H 0.072 0.928 44 H 0.105 0.895 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.127 13.044 -1.918 23.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 N -0.100 5.100 4 H 0.287 0.713 5 N -0.094 5.094 6 C -0.158 4.158 7 C 0.382 3.618 8 O -0.402 6.402 9 N -0.330 5.330 10 C -0.030 4.030 11 C -0.161 4.161 12 C 0.018 3.982 13 H 0.069 0.931 14 O -0.309 6.309 15 C -0.039 4.039 16 C 0.018 3.982 17 N -0.313 5.313 18 C -0.386 4.386 19 H 0.090 0.910 20 C -0.193 4.193 21 N -0.545 5.545 22 Si 0.734 3.266 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.202 1.202 26 C 0.029 3.971 27 H 0.054 0.946 28 C 0.004 3.996 29 C -0.153 4.153 30 C -0.139 4.139 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.143 0.857 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.058 0.942 39 H 0.099 0.901 40 H 0.046 0.954 41 H 0.112 0.888 42 H 0.065 0.935 43 H 0.091 0.909 44 H 0.123 0.877 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.397 13.243 -1.801 22.739 hybrid contribution 0.120 -0.641 -0.795 1.028 sum -18.276 12.602 -2.596 22.351 Atomic orbital electron populations 1.20328 0.86680 1.03861 1.03220 1.21181 0.95116 0.86961 1.08584 1.43349 1.03240 1.09340 1.54024 0.71346 1.73386 1.00780 1.14860 1.20407 1.21979 0.95078 0.89460 1.09278 1.16995 0.81442 0.86252 0.77138 1.90779 1.86002 1.12942 1.50436 1.48158 1.05900 1.09698 1.69274 1.22378 1.03245 0.80442 0.96936 1.21860 0.94556 1.00991 0.98703 1.22442 0.89610 0.96498 0.89682 0.93072 1.87738 1.22405 1.78370 1.42415 1.23322 0.83173 0.97542 0.99844 1.21423 0.95465 0.89223 0.92109 1.44047 1.05589 1.51667 1.29958 1.19158 1.21243 1.07113 0.91124 0.90996 1.25085 1.01420 0.96498 0.96275 1.70023 1.32833 1.31828 1.19856 0.86258 0.79150 0.78840 0.82384 1.21430 1.21661 1.20218 1.21289 0.88284 0.91645 0.95858 0.94598 1.21839 0.81743 0.97910 0.98122 1.20122 0.90613 0.96718 1.07888 1.20216 1.01440 0.89806 1.02426 0.90408 0.89549 0.91185 0.85667 0.91708 0.91171 0.90482 0.94163 0.90146 0.95413 0.88798 0.93528 0.90949 0.87685 0.91466 0.92110 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.14 36.01 0.37 -0.03 16 2 C 0.01 0.06 7.23 -82.21 -0.59 -0.53 16 3 N -0.39 -3.32 6.83 33.50 0.23 -3.10 16 4 H 0.44 2.00 8.96 -190.44 -1.71 0.29 16 5 N -0.26 -3.17 8.69 33.42 0.29 -2.88 16 6 C 0.00 0.04 6.82 -82.76 -0.56 -0.53 16 7 C 0.60 10.83 7.68 -12.39 -0.10 10.73 16 8 O -0.53 -11.04 14.47 5.31 0.08 -10.96 16 9 N -0.60 -10.61 2.99 -173.72 -0.52 -11.13 16 10 C 0.09 1.37 6.09 -3.67 -0.02 1.35 16 11 C -0.12 -1.90 5.82 -26.65 -0.16 -2.06 16 12 C 0.08 1.49 2.50 -26.63 -0.07 1.43 16 13 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 14 O -0.39 -8.04 10.49 -35.23 -0.37 -8.41 16 15 C 0.04 0.79 6.95 37.25 0.26 1.05 16 16 C 0.14 3.51 5.41 -3.48 -0.02 3.49 16 17 N -0.59 -15.03 3.04 -164.35 -0.50 -15.53 16 18 C -0.26 -7.02 8.86 -15.06 -0.13 -7.15 16 19 H 0.07 1.91 6.29 -52.48 -0.33 1.58 16 20 C 0.01 0.18 4.99 -17.43 -0.09 0.09 16 21 N -0.90 -26.26 11.17 55.49 0.62 -25.64 16 22 Si 0.90 21.88 29.58 -169.99 -5.03 16.85 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C 0.14 3.06 2.99 -67.52 -0.20 2.86 16 27 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 28 C 0.13 2.60 4.52 -3.61 -0.02 2.58 16 29 C -0.14 -1.79 6.24 -104.41 -0.65 -2.45 16 30 C -0.08 -0.93 9.67 36.00 0.35 -0.59 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.39 7.99 -51.93 -0.41 -0.02 16 33 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.13 1.68 4.15 -74.37 -0.31 1.37 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 2.48 6.26 -51.93 -0.32 2.15 16 42 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.07 1.49 7.35 -51.93 -0.38 1.11 16 44 H 0.10 2.46 6.81 -51.93 -0.35 2.11 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.52 8.00 -51.93 -0.42 0.11 16 47 H 0.09 1.22 6.62 -51.93 -0.34 0.88 16 LS Contribution 364.77 15.07 5.50 5.50 Total: -1.00 -33.81 364.77 -9.70 -43.51 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -8.36 Total: 1.54 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: -1.64 Total: 10.25 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: 0.12 Total: -58.27 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.29 Total: -19.37 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.81 -9.70 -43.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074196991.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.162 kcal (2) G-P(sol) polarization free energy of solvation -33.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds