Wall clock time and date at job start Tue Mar 31 2020 19:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.35035 * 126.38093 * 2 1 4 4 H 0.97003 * 124.88943 * 0.02562 * 3 2 1 5 5 N 1.28469 * 110.23087 * 180.02562 * 3 2 1 6 6 C 1.31808 * 110.07014 * 359.97438 * 5 3 2 7 7 C 1.47716 * 126.51997 * 180.02562 * 6 5 3 8 8 O 1.21568 * 120.00408 * 186.50404 * 7 6 5 9 9 N 1.34778 * 119.99598 * 6.50549 * 7 6 5 10 10 C 1.46836 * 120.41257 * 6.35609 * 9 7 6 11 11 C 1.53365 * 109.25100 * 127.75456 * 10 9 7 12 12 C 1.52791 * 108.82042 * 53.83315 * 11 10 9 13 13 H 1.09000 * 109.34015 * 57.15393 * 12 11 10 14 14 O 1.42601 * 111.11566 * 177.47364 * 12 11 10 15 15 C 1.43143 * 113.63123 * 183.61094 * 14 12 11 16 16 C 1.53184 * 109.74346 * 298.31521 * 15 14 12 17 17 N 1.47354 * 108.80498 * 51.20873 * 16 15 14 18 18 C 1.36939 * 121.30747 * 130.03384 * 17 16 15 19 19 H 1.08003 * 119.99964 * 207.67908 * 18 17 16 20 20 C 1.38816 * 120.00128 * 27.67821 * 18 17 16 21 21 N 1.31617 * 119.99747 * 15.17982 * 20 18 17 22 22 Si 1.86793 * 120.00114 * 195.18302 * 20 18 17 23 23 H 1.48502 * 109.47164 * 89.99908 * 22 20 18 24 24 H 1.48496 * 109.47256 * 209.99862 * 22 20 18 25 25 H 1.48500 * 109.47092 * 329.99927 * 22 20 18 26 26 C 1.46874 * 117.38526 * 309.76180 * 17 16 15 27 27 H 1.08998 * 109.65695 * 292.34490 * 26 17 16 28 28 C 1.47294 * 119.86941 * 185.92070 * 9 7 6 29 29 C 1.35360 * 126.38679 * 180.32554 * 2 1 3 30 30 C 1.50697 * 127.25226 * 359.97438 * 29 2 1 31 31 H 1.08995 * 109.47133 * 89.97744 * 1 2 3 32 32 H 1.09003 * 109.47132 * 209.97529 * 1 2 3 33 33 H 1.08998 * 109.47449 * 329.97568 * 1 2 3 34 34 H 1.09002 * 109.50898 * 7.82460 * 10 9 7 35 35 H 1.08998 * 109.54780 * 247.71060 * 10 9 7 36 36 H 1.09000 * 109.57809 * 294.03136 * 11 10 9 37 37 H 1.09001 * 109.58463 * 173.63404 * 11 10 9 38 38 H 1.09001 * 109.42461 * 58.39779 * 15 14 12 39 39 H 1.08999 * 109.42364 * 178.28272 * 15 14 12 40 40 H 1.09002 * 109.58812 * 291.40939 * 16 15 14 41 41 H 1.09002 * 109.58622 * 171.00259 * 16 15 14 42 42 H 0.97005 * 119.99902 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.22759 * 113.24115 * 28 9 7 44 44 H 1.09003 * 110.31853 * 352.51318 * 28 9 7 45 45 H 1.08999 * 109.47254 * 270.19094 * 30 29 2 46 46 H 1.09006 * 109.46926 * 30.18882 * 30 29 2 47 47 H 1.08999 * 109.47426 * 150.18954 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3080 1.0872 0.0000 4 1 1.9965 2.0058 0.0004 5 7 3.5420 0.7298 -0.0005 6 6 3.6321 -0.5852 -0.0004 7 6 4.8765 -1.3810 -0.0003 8 8 4.8251 -2.5898 -0.1194 9 7 6.0690 -0.7670 0.1318 10 6 6.1367 0.6722 0.4151 11 6 7.0347 0.9054 1.6363 12 6 8.3850 0.2340 1.3906 13 1 8.8240 0.6305 0.4752 14 8 9.2809 0.4703 2.4746 15 6 10.5910 -0.0665 2.2636 16 6 10.5084 -1.5886 2.1123 17 7 9.4897 -1.9105 1.0974 18 6 9.7592 -2.7704 0.0664 19 1 9.2325 -2.6713 -0.8712 20 6 10.7096 -3.7696 0.2264 21 7 11.1331 -4.0881 1.4311 22 14 11.3873 -4.6619 -1.2682 23 1 12.5869 -3.9452 -1.7708 24 1 11.7614 -6.0482 -0.8896 25 1 10.3523 -4.7016 -2.3324 26 6 8.1719 -1.2775 1.2386 27 1 7.6705 -1.6681 2.1240 28 6 7.3130 -1.5447 0.0010 29 6 2.3100 -1.0897 -0.0062 30 6 1.8855 -2.5356 -0.0139 31 1 -0.3633 0.0004 -1.0276 32 1 -0.3633 -0.8902 0.5135 33 1 -0.3634 0.8897 0.5142 34 1 5.1354 1.0499 0.6222 35 1 6.5517 1.1944 -0.4469 36 1 6.5674 0.4732 2.5212 37 1 7.1803 1.9756 1.7836 38 1 11.0181 0.3651 1.3583 39 1 11.2248 0.1785 3.1159 40 1 10.2281 -2.0359 3.0659 41 1 11.4760 -1.9773 1.7946 42 1 11.7975 -4.7860 1.5429 43 1 7.8459 -1.2217 -0.8933 44 1 7.0885 -2.6091 -0.0681 45 1 1.7802 -2.8888 1.0119 46 1 0.9306 -2.6312 -0.5308 47 1 2.6385 -3.1327 -0.5283 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074196991.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:15 Heat of formation + Delta-G solvation = 10.563106 kcal Electronic energy + Delta-G solvation = -30264.140822 eV Core-core repulsion = 26255.863801 eV Total energy + Delta-G solvation = -4008.277021 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.78700 -41.34844 -39.94283 -37.48432 -36.56294 -34.49283 -33.92420 -33.20703 -32.87108 -31.42676 -29.49922 -28.80091 -27.20414 -26.94593 -25.51262 -24.80395 -23.48362 -22.58203 -21.42907 -21.01633 -20.05880 -18.76300 -18.67691 -17.83768 -17.26752 -17.14527 -16.98560 -16.69741 -16.27544 -16.09848 -15.58924 -15.42107 -15.02194 -14.81544 -14.67194 -14.64139 -14.12834 -13.97783 -13.90260 -13.79742 -13.57734 -13.42389 -13.06248 -12.99358 -12.91809 -12.83985 -12.67956 -12.40769 -12.34873 -12.08266 -11.96179 -11.89563 -11.44819 -11.25776 -10.94606 -10.76469 -10.54349 -10.33792 -9.74824 -9.59572 -8.75984 -7.92464 -5.42108 0.44355 1.08728 1.44486 1.45531 1.54702 1.69369 2.09915 2.26084 2.46215 2.81201 3.22105 3.26888 3.42195 3.70246 3.80203 3.91664 4.02601 4.07388 4.15261 4.19979 4.29459 4.34539 4.38978 4.49544 4.54036 4.57172 4.70310 4.82215 4.82792 4.85925 4.89557 4.93292 4.97711 5.04085 5.07741 5.11265 5.12494 5.22359 5.27035 5.44512 5.51821 5.57680 5.61357 6.14211 6.23852 6.31153 6.34730 6.84159 7.03120 7.08747 7.69905 8.26287 9.13884 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015593 B = 0.003535 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.281580 B = 7917.842605 C = 9246.837506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.035 3.965 3 N -0.361 5.361 4 H 0.464 0.536 5 N -0.261 5.261 6 C -0.031 4.031 7 C 0.589 3.411 8 O -0.570 6.570 9 N -0.600 5.600 10 C 0.096 3.904 11 C -0.113 4.113 12 C 0.083 3.917 13 H 0.058 0.942 14 O -0.392 6.392 15 C 0.051 3.949 16 C 0.147 3.853 17 N -0.605 5.605 18 C -0.264 4.264 19 H 0.075 0.925 20 C -0.047 4.047 21 N -0.935 5.935 22 Si 0.969 3.031 23 H -0.278 1.278 24 H -0.295 1.295 25 H -0.271 1.271 26 C 0.135 3.865 27 H 0.001 0.999 28 C 0.141 3.859 29 C -0.175 4.175 30 C -0.077 4.077 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.146 0.854 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.113 0.887 38 H 0.051 0.949 39 H 0.111 0.889 40 H -0.004 1.004 41 H 0.071 0.929 42 H 0.252 0.748 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.092 0.908 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.633 16.477 -2.858 27.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 N -0.078 5.078 4 H 0.313 0.687 5 N -0.098 5.098 6 C -0.189 4.189 7 C 0.377 3.623 8 O -0.448 6.448 9 N -0.332 5.332 10 C -0.026 4.026 11 C -0.151 4.151 12 C 0.024 3.976 13 H 0.076 0.924 14 O -0.312 6.312 15 C -0.026 4.026 16 C 0.022 3.978 17 N -0.330 5.330 18 C -0.393 4.393 19 H 0.092 0.908 20 C -0.243 4.243 21 N -0.581 5.581 22 Si 0.797 3.203 23 H -0.204 1.204 24 H -0.221 1.221 25 H -0.196 1.196 26 C 0.028 3.972 27 H 0.019 0.981 28 C 0.018 3.982 29 C -0.185 4.185 30 C -0.135 4.135 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.162 0.838 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.131 0.869 38 H 0.069 0.931 39 H 0.128 0.872 40 H 0.014 0.986 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.111 0.889 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.925 16.751 -2.742 26.944 hybrid contribution 0.746 -1.679 -0.469 1.896 sum -20.179 15.072 -3.211 25.391 Atomic orbital electron populations 1.20548 0.83096 1.05598 1.04822 1.21665 0.96817 0.85507 1.05182 1.43445 1.02158 1.10610 1.51555 0.68722 1.73159 1.02642 1.13395 1.20574 1.21523 0.94222 0.90484 1.12710 1.17560 0.82523 0.86190 0.76044 1.90745 1.86774 1.14993 1.52250 1.48222 1.04773 1.10834 1.69378 1.22628 1.04359 0.78396 0.97216 1.21873 0.92029 1.02555 0.98672 1.22481 0.91426 0.93917 0.89811 0.92444 1.87747 1.22521 1.77827 1.43059 1.23196 0.83783 0.93908 1.01752 1.21301 0.94027 0.92296 0.90190 1.44346 1.07118 1.51821 1.29710 1.19467 1.20844 1.07271 0.91748 0.90780 1.25870 1.02044 0.97518 0.98840 1.70182 1.33547 1.32568 1.21769 0.85240 0.78623 0.77243 0.79217 1.20435 1.22146 1.19573 1.21406 0.86890 0.93854 0.95049 0.98091 1.21372 0.83055 0.96405 0.97392 1.20369 0.90351 0.98029 1.09725 1.20149 1.01818 0.89265 1.02242 0.88688 0.88945 0.88386 0.83756 0.89879 0.92191 0.86911 0.93065 0.87157 0.98614 0.91048 0.93922 0.90811 0.91475 0.91692 0.88945 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.14 71.24 0.72 0.32 16 2 C 0.04 0.51 7.23 41.40 0.30 0.81 16 3 N -0.36 -4.84 6.83 -47.93 -0.33 -5.17 16 4 H 0.46 1.95 8.96 -219.99 -1.97 -0.02 16 5 N -0.26 -5.74 8.69 -48.17 -0.42 -6.16 16 6 C -0.03 -0.91 6.82 42.46 0.29 -0.62 16 7 C 0.59 22.29 7.68 86.75 0.67 22.96 16 8 O -0.57 -25.75 14.47 -3.93 -0.06 -25.81 16 9 N -0.60 -21.78 2.99 -821.79 -2.46 -24.24 16 10 C 0.10 2.64 6.09 86.44 0.53 3.17 16 11 C -0.11 -3.29 5.82 30.65 0.18 -3.11 16 12 C 0.08 3.14 2.50 30.66 0.08 3.22 16 13 H 0.06 2.14 8.13 -2.39 -0.02 2.12 16 14 O -0.39 -15.72 10.49 -148.98 -1.56 -17.28 16 15 C 0.05 2.05 6.95 72.04 0.50 2.55 16 16 C 0.15 7.51 5.41 86.28 0.47 7.97 16 17 N -0.60 -32.25 3.04 -673.89 -2.05 -34.30 16 18 C -0.26 -14.95 8.86 84.03 0.74 -14.20 16 19 H 0.07 4.09 6.29 -2.91 -0.02 4.07 16 20 C -0.05 -2.70 4.99 84.86 0.42 -2.28 16 21 N -0.94 -56.86 11.17 21.65 0.24 -56.62 16 22 Si 0.97 46.25 29.58 68.60 2.03 48.28 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 24 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 25 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 26 C 0.14 6.30 2.99 45.05 0.13 6.43 16 27 H 0.00 0.07 8.14 -2.39 -0.02 0.06 16 28 C 0.14 6.13 4.52 86.23 0.39 6.52 16 29 C -0.17 -4.17 6.24 -19.72 -0.12 -4.29 16 30 C -0.08 -1.77 9.67 71.24 0.69 -1.08 16 31 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.09 0.44 7.99 -2.39 -0.02 0.42 16 33 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 34 H 0.15 3.51 4.15 -31.42 -0.13 3.38 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 40 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 41 H 0.07 3.94 6.26 -2.39 -0.01 3.92 16 42 H 0.25 14.76 8.31 -92.70 -0.77 13.99 16 43 H 0.07 3.15 7.35 -2.39 -0.02 3.13 16 44 H 0.07 3.41 6.81 -2.39 -0.02 3.40 16 45 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.09 1.44 8.00 -2.38 -0.02 1.42 16 47 H 0.05 1.56 6.62 -2.39 -0.02 1.54 16 Total: -1.00 -79.66 364.77 0.30 -79.37 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -1.09 Total: 13.56 kcal Atomic # 6 Polarization: 22.38 SS G_CDS: 5.99 Total: 28.37 kcal Atomic # 7 Polarization: -121.48 SS G_CDS: -5.01 Total: -126.49 kcal Atomic # 8 Polarization: -41.47 SS G_CDS: -1.62 Total: -43.09 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -79.66 0.30 -79.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074196991.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.929 kcal (2) G-P(sol) polarization free energy of solvation -79.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds