Wall clock time and date at job start Tue Mar 31 2020 19:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35033 * 126.38728 * 2 1 4 4 H 0.96997 * 124.88688 * 0.03923 * 3 2 1 5 5 N 1.28474 * 110.23044 * 179.74638 * 3 2 1 6 6 C 1.31810 * 110.07053 * 0.45296 * 5 3 2 7 7 C 1.47710 * 126.51513 * 179.81510 * 6 5 3 8 8 O 1.21568 * 119.99930 * 183.92109 * 7 6 5 9 9 N 1.34772 * 120.00240 * 3.92983 * 7 6 5 10 10 C 1.46986 * 120.72045 * 354.82186 * 9 7 6 11 11 C 1.53157 * 108.44609 * 125.44128 * 10 9 7 12 12 C 1.52511 * 109.79582 * 54.51669 * 11 10 9 13 13 H 1.08999 * 108.93065 * 180.34379 * 12 11 10 14 14 O 1.42684 * 110.62526 * 61.30552 * 12 11 10 15 15 C 1.43074 * 113.87093 * 174.64100 * 14 12 11 16 16 C 1.52801 * 109.51943 * 61.50943 * 15 14 12 17 17 N 1.47171 * 108.92915 * 308.65794 * 16 15 14 18 18 C 1.36930 * 121.23019 * 230.90390 * 17 16 15 19 19 H 1.08003 * 120.00046 * 153.86223 * 18 17 16 20 20 C 1.38819 * 120.00097 * 333.87253 * 18 17 16 21 21 N 1.31614 * 119.99546 * 332.44847 * 20 18 17 22 22 Si 1.86802 * 120.00017 * 152.44585 * 20 18 17 23 23 H 1.48500 * 109.46578 * 180.02562 * 22 20 18 24 24 H 1.48498 * 109.47106 * 299.99855 * 22 20 18 25 25 H 1.48490 * 109.47119 * 60.00071 * 22 20 18 26 26 C 1.47600 * 117.54869 * 50.63468 * 17 16 15 27 27 H 1.08994 * 110.31409 * 186.93140 * 26 17 16 28 28 C 1.46797 * 120.72386 * 174.80577 * 9 7 6 29 29 C 1.35365 * 126.38170 * 180.02562 * 2 1 3 30 30 C 1.50699 * 127.24992 * 359.97438 * 29 2 1 31 31 H 1.08999 * 109.47088 * 269.97847 * 1 2 3 32 32 H 1.09003 * 109.46752 * 29.97508 * 1 2 3 33 33 H 1.08994 * 109.47124 * 149.97444 * 1 2 3 34 34 H 1.08989 * 109.64376 * 245.12966 * 10 9 7 35 35 H 1.09000 * 109.63609 * 5.75727 * 10 9 7 36 36 H 1.09002 * 109.41745 * 174.62167 * 11 10 9 37 37 H 1.09003 * 109.41883 * 294.41911 * 11 10 9 38 38 H 1.09000 * 109.48136 * 181.63826 * 15 14 12 39 39 H 1.09004 * 109.47389 * 301.64958 * 15 14 12 40 40 H 1.09004 * 109.53695 * 188.80146 * 16 15 14 41 41 H 1.09004 * 109.44645 * 68.47176 * 16 15 14 42 42 H 0.96996 * 120.00166 * 354.26016 * 21 20 18 43 43 H 1.08998 * 109.52517 * 114.41206 * 28 9 7 44 44 H 1.08999 * 109.51980 * 354.21838 * 28 9 7 45 45 H 1.09003 * 109.46567 * 269.99353 * 30 29 2 46 46 H 1.08998 * 109.47338 * 29.99652 * 30 29 2 47 47 H 1.09008 * 109.47177 * 149.99695 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3081 1.0871 0.0000 4 1 1.9967 2.0057 0.0005 5 7 3.5421 0.7296 0.0053 6 6 3.6321 -0.5855 -0.0007 7 6 4.8765 -1.3813 -0.0013 8 8 4.8228 -2.5933 -0.0792 9 7 6.0713 -0.7638 0.0847 10 6 6.1616 0.7032 0.0658 11 6 6.9337 1.1572 1.3081 12 6 8.2821 0.4471 1.3664 13 1 8.8165 0.7755 2.2578 14 8 9.0713 0.7724 0.2231 15 6 10.3986 0.2398 0.2651 16 6 10.3351 -1.2861 0.3132 17 7 9.4262 -1.6922 1.3972 18 6 9.8099 -2.6085 2.3396 19 1 9.3581 -2.5958 3.3205 20 6 10.7798 -3.5535 2.0343 21 7 10.9453 -3.9481 0.7897 22 14 11.8500 -4.2651 3.3900 23 1 12.8004 -5.2459 2.8069 24 1 12.6094 -3.1710 4.0468 25 1 10.9914 -4.9436 4.3937 26 6 8.0878 -1.0709 1.4346 27 1 7.5620 -1.3594 2.3447 28 6 7.3110 -1.5417 0.1996 29 6 2.3100 -1.0898 -0.0005 30 6 1.8853 -2.5357 -0.0006 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8897 -0.5142 34 1 6.6889 1.0263 -0.8317 35 1 5.1596 1.1320 0.0801 36 1 7.0931 2.2345 1.2620 37 1 6.3578 0.9151 2.2013 38 1 10.9448 0.5542 -0.6242 39 1 10.9098 0.6079 1.1547 40 1 11.3311 -1.6866 0.5021 41 1 9.9611 -1.6640 -0.6384 42 1 10.3367 -3.6426 0.0990 43 1 7.9192 -1.3916 -0.6924 44 1 7.0690 -2.5994 0.3029 45 1 1.7834 -2.8844 1.0271 46 1 0.9288 -2.6334 -0.5140 47 1 2.6366 -3.1351 -0.5149 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074196992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:20 Heat of formation + Delta-G solvation = 33.827338 kcal Electronic energy + Delta-G solvation = -30471.654075 eV Core-core repulsion = 26464.385867 eV Total energy + Delta-G solvation = -4007.268209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.89914 -39.92837 -38.43890 -35.79766 -34.85717 -33.68218 -32.76740 -31.63039 -31.39457 -29.55686 -28.61080 -27.26423 -26.35671 -25.32767 -23.70527 -23.29036 -22.56912 -21.28699 -20.17228 -19.28652 -18.34685 -17.84487 -17.45881 -16.46523 -16.14739 -15.59116 -15.53322 -15.08381 -14.95967 -14.38110 -14.06603 -13.91594 -13.73649 -13.59274 -13.52278 -13.29725 -13.09892 -12.92002 -12.70496 -12.50141 -12.48995 -12.21994 -12.14911 -11.87059 -11.40379 -11.28796 -10.93662 -10.71691 -10.55277 -10.40102 -10.07512 -10.00095 -9.82586 -9.58245 -9.42978 -9.42208 -9.10100 -8.83299 -8.38758 -8.18382 -6.91861 -6.11699 -3.25893 1.51246 1.95533 2.61672 3.31936 3.50163 3.52471 3.58283 3.70943 4.25920 4.35240 4.42625 4.54868 4.68006 5.01688 5.08113 5.10733 5.11781 5.28575 5.34367 5.40620 5.44460 5.55669 5.59338 5.69287 5.77660 5.78545 5.80694 5.97626 5.99589 6.01414 6.06219 6.13511 6.21437 6.22936 6.31021 6.38718 6.53377 6.61191 6.70723 6.81024 6.84727 7.02949 7.05199 7.67813 7.80372 7.87244 7.92913 8.47852 8.51496 9.01237 9.77780 10.20550 11.16694 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018043 B = 0.003375 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.479791 B = 8294.478552 C = 9267.088288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.008 3.992 3 N -0.387 5.387 4 H 0.442 0.558 5 N -0.260 5.260 6 C 0.007 3.993 7 C 0.593 3.407 8 O -0.533 6.533 9 N -0.590 5.590 10 C 0.080 3.920 11 C -0.118 4.118 12 C 0.081 3.919 13 H 0.051 0.949 14 O -0.385 6.385 15 C 0.046 3.954 16 C 0.116 3.884 17 N -0.590 5.590 18 C -0.354 4.354 19 H 0.059 0.941 20 C -0.020 4.020 21 N -0.908 5.908 22 Si 1.064 2.936 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.292 1.292 26 C 0.137 3.863 27 H 0.076 0.924 28 C 0.105 3.895 29 C -0.145 4.145 30 C -0.080 4.080 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.134 0.866 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.044 0.956 40 H 0.086 0.914 41 H 0.027 0.973 42 H 0.270 0.730 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.005 13.250 -2.043 23.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 N -0.100 5.100 4 H 0.286 0.714 5 N -0.094 5.094 6 C -0.154 4.154 7 C 0.379 3.621 8 O -0.408 6.408 9 N -0.323 5.323 10 C -0.044 4.044 11 C -0.157 4.157 12 C 0.021 3.979 13 H 0.069 0.931 14 O -0.304 6.304 15 C -0.032 4.032 16 C -0.010 4.010 17 N -0.314 5.314 18 C -0.482 4.482 19 H 0.077 0.923 20 C -0.223 4.223 21 N -0.547 5.547 22 Si 0.893 3.107 23 H -0.211 1.211 24 H -0.221 1.221 25 H -0.219 1.219 26 C 0.029 3.971 27 H 0.094 0.906 28 C -0.019 4.019 29 C -0.155 4.155 30 C -0.138 4.138 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.150 0.850 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.062 0.938 40 H 0.104 0.896 41 H 0.044 0.956 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.107 0.893 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.100 12.553 -1.901 21.298 hybrid contribution -1.630 0.860 -0.061 1.844 sum -18.730 13.413 -1.962 23.121 Atomic orbital electron populations 1.20335 0.86678 1.03803 1.03266 1.21175 0.95095 0.86973 1.08503 1.43409 1.03272 1.09330 1.53974 0.71399 1.73160 1.00563 1.14779 1.20937 1.22017 0.95080 0.89388 1.08934 1.17028 0.81486 0.86339 0.77293 1.90766 1.86187 1.13015 1.50862 1.48086 1.05954 1.07675 1.70539 1.22608 1.04381 0.79416 0.97998 1.21750 0.94743 1.00240 0.98966 1.22243 0.91357 0.95591 0.88666 0.93132 1.87737 1.24763 1.75183 1.42732 1.23071 0.83220 0.96299 1.00616 1.21528 0.96765 0.91454 0.91203 1.44357 1.07564 1.47880 1.31589 1.19938 1.25487 1.10739 0.92070 0.92295 1.25860 1.00853 0.94313 1.01248 1.70780 1.41024 1.40661 1.02198 0.83542 0.76514 0.75985 0.74620 1.21051 1.22060 1.21888 1.21605 0.87576 0.91476 0.96492 0.90576 1.22359 0.82732 0.96714 1.00077 1.20114 0.90619 0.96713 1.08018 1.20210 1.01311 0.89817 1.02422 0.90348 0.91234 0.89561 0.91368 0.84954 0.90650 0.90776 0.89902 0.93772 0.89563 0.95553 0.91941 0.91534 0.89338 0.91442 0.92133 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.26 36.01 0.37 -0.04 16 2 C 0.01 0.08 7.23 -82.21 -0.59 -0.52 16 3 N -0.39 -3.42 6.83 33.50 0.23 -3.19 16 4 H 0.44 2.09 8.96 -190.44 -1.71 0.38 16 5 N -0.26 -3.27 8.56 33.42 0.29 -2.98 16 6 C 0.01 0.10 6.91 -82.76 -0.57 -0.47 16 7 C 0.59 11.10 7.70 -12.39 -0.10 11.01 16 8 O -0.53 -11.47 14.53 5.31 0.08 -11.39 16 9 N -0.59 -10.88 2.96 -173.94 -0.52 -11.40 16 10 C 0.08 1.23 6.17 -3.70 -0.02 1.21 16 11 C -0.12 -1.79 5.82 -26.90 -0.16 -1.95 16 12 C 0.08 1.52 2.73 -26.89 -0.07 1.44 16 13 H 0.05 0.98 8.11 -51.93 -0.42 0.56 16 14 O -0.38 -7.44 9.59 -35.23 -0.34 -7.78 16 15 C 0.05 0.89 6.96 37.06 0.26 1.15 16 16 C 0.12 2.72 4.38 -3.78 -0.02 2.70 16 17 N -0.59 -14.82 2.58 -164.12 -0.42 -15.24 16 18 C -0.35 -9.88 9.56 -15.06 -0.14 -10.02 16 19 H 0.06 1.66 7.97 -52.48 -0.42 1.25 16 20 C -0.02 -0.56 4.65 -17.43 -0.08 -0.64 16 21 N -0.91 -27.12 12.47 55.49 0.69 -26.42 16 22 Si 1.06 25.26 30.00 -169.99 -5.10 20.16 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 C 0.14 2.99 3.03 -67.07 -0.20 2.78 16 27 H 0.08 1.74 7.99 -51.93 -0.42 1.32 16 28 C 0.10 2.25 5.61 -3.72 -0.02 2.23 16 29 C -0.14 -1.85 6.25 -104.40 -0.65 -2.50 16 30 C -0.08 -0.94 9.78 36.00 0.35 -0.59 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.09 0.40 7.31 -51.93 -0.38 0.02 16 34 H 0.07 1.09 7.94 -51.94 -0.41 0.68 16 35 H 0.13 1.85 3.69 -118.46 -0.44 1.41 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.04 0.86 8.13 -51.93 -0.42 0.43 16 40 H 0.09 2.21 6.48 -51.93 -0.34 1.87 16 41 H 0.03 0.64 6.89 -51.93 -0.36 0.28 16 42 H 0.27 8.18 6.85 -40.82 -0.28 7.90 16 43 H 0.07 1.50 6.58 -51.93 -0.34 1.15 16 44 H 0.09 2.16 7.03 -51.93 -0.36 1.79 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 0.53 7.31 -51.93 -0.38 0.15 16 47 H 0.08 1.23 6.65 -51.92 -0.35 0.88 16 LS Contribution 362.60 15.07 5.46 5.46 Total: -1.00 -34.11 362.60 -9.63 -43.74 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -8.35 Total: 3.25 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -1.65 Total: 5.80 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: 0.27 Total: -59.24 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.26 Total: -19.17 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.10 Total: 20.16 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.11 -9.63 -43.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074196992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.570 kcal (2) G-P(sol) polarization free energy of solvation -34.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds