Wall clock time and date at job start Tue Mar 31 2020 19:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35033 * 126.38728 * 2 1 4 4 H 0.96997 * 124.88688 * 0.03923 * 3 2 1 5 5 N 1.28474 * 110.23044 * 179.74638 * 3 2 1 6 6 C 1.31810 * 110.07053 * 0.45296 * 5 3 2 7 7 C 1.47710 * 126.51513 * 179.81510 * 6 5 3 8 8 O 1.21568 * 119.99930 * 183.92109 * 7 6 5 9 9 N 1.34772 * 120.00240 * 3.92983 * 7 6 5 10 10 C 1.46986 * 120.72045 * 354.82186 * 9 7 6 11 11 C 1.53157 * 108.44609 * 125.44128 * 10 9 7 12 12 C 1.52511 * 109.79582 * 54.51669 * 11 10 9 13 13 H 1.08999 * 108.93065 * 180.34379 * 12 11 10 14 14 O 1.42684 * 110.62526 * 61.30552 * 12 11 10 15 15 C 1.43074 * 113.87093 * 174.64100 * 14 12 11 16 16 C 1.52801 * 109.51943 * 61.50943 * 15 14 12 17 17 N 1.47171 * 108.92915 * 308.65794 * 16 15 14 18 18 C 1.36930 * 121.23019 * 230.90390 * 17 16 15 19 19 H 1.08003 * 120.00046 * 153.86223 * 18 17 16 20 20 C 1.38819 * 120.00097 * 333.87253 * 18 17 16 21 21 N 1.31614 * 119.99546 * 332.44847 * 20 18 17 22 22 Si 1.86802 * 120.00017 * 152.44585 * 20 18 17 23 23 H 1.48500 * 109.46578 * 180.02562 * 22 20 18 24 24 H 1.48498 * 109.47106 * 299.99855 * 22 20 18 25 25 H 1.48490 * 109.47119 * 60.00071 * 22 20 18 26 26 C 1.47600 * 117.54869 * 50.63468 * 17 16 15 27 27 H 1.08994 * 110.31409 * 186.93140 * 26 17 16 28 28 C 1.46797 * 120.72386 * 174.80577 * 9 7 6 29 29 C 1.35365 * 126.38170 * 180.02562 * 2 1 3 30 30 C 1.50699 * 127.24992 * 359.97438 * 29 2 1 31 31 H 1.08999 * 109.47088 * 269.97847 * 1 2 3 32 32 H 1.09003 * 109.46752 * 29.97508 * 1 2 3 33 33 H 1.08994 * 109.47124 * 149.97444 * 1 2 3 34 34 H 1.08989 * 109.64376 * 245.12966 * 10 9 7 35 35 H 1.09000 * 109.63609 * 5.75727 * 10 9 7 36 36 H 1.09002 * 109.41745 * 174.62167 * 11 10 9 37 37 H 1.09003 * 109.41883 * 294.41911 * 11 10 9 38 38 H 1.09000 * 109.48136 * 181.63826 * 15 14 12 39 39 H 1.09004 * 109.47389 * 301.64958 * 15 14 12 40 40 H 1.09004 * 109.53695 * 188.80146 * 16 15 14 41 41 H 1.09004 * 109.44645 * 68.47176 * 16 15 14 42 42 H 0.96996 * 120.00166 * 354.26016 * 21 20 18 43 43 H 1.08998 * 109.52517 * 114.41206 * 28 9 7 44 44 H 1.08999 * 109.51980 * 354.21838 * 28 9 7 45 45 H 1.09003 * 109.46567 * 269.99353 * 30 29 2 46 46 H 1.08998 * 109.47338 * 29.99652 * 30 29 2 47 47 H 1.09008 * 109.47177 * 149.99695 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3081 1.0871 0.0000 4 1 1.9967 2.0057 0.0005 5 7 3.5421 0.7296 0.0053 6 6 3.6321 -0.5855 -0.0007 7 6 4.8765 -1.3813 -0.0013 8 8 4.8228 -2.5933 -0.0792 9 7 6.0713 -0.7638 0.0847 10 6 6.1616 0.7032 0.0658 11 6 6.9337 1.1572 1.3081 12 6 8.2821 0.4471 1.3664 13 1 8.8165 0.7755 2.2578 14 8 9.0713 0.7724 0.2231 15 6 10.3986 0.2398 0.2651 16 6 10.3351 -1.2861 0.3132 17 7 9.4262 -1.6922 1.3972 18 6 9.8099 -2.6085 2.3396 19 1 9.3581 -2.5958 3.3205 20 6 10.7798 -3.5535 2.0343 21 7 10.9453 -3.9481 0.7897 22 14 11.8500 -4.2651 3.3900 23 1 12.8004 -5.2459 2.8069 24 1 12.6094 -3.1710 4.0468 25 1 10.9914 -4.9436 4.3937 26 6 8.0878 -1.0709 1.4346 27 1 7.5620 -1.3594 2.3447 28 6 7.3110 -1.5417 0.1996 29 6 2.3100 -1.0898 -0.0005 30 6 1.8853 -2.5357 -0.0006 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8897 -0.5142 34 1 6.6889 1.0263 -0.8317 35 1 5.1596 1.1320 0.0801 36 1 7.0931 2.2345 1.2620 37 1 6.3578 0.9151 2.2013 38 1 10.9448 0.5542 -0.6242 39 1 10.9098 0.6079 1.1547 40 1 11.3311 -1.6866 0.5021 41 1 9.9611 -1.6640 -0.6384 42 1 10.3367 -3.6426 0.0990 43 1 7.9192 -1.3916 -0.6924 44 1 7.0690 -2.5994 0.3029 45 1 1.7834 -2.8844 1.0271 46 1 0.9288 -2.6334 -0.5140 47 1 2.6366 -3.1351 -0.5149 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074196992.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:19 Heat of formation + Delta-G solvation = 9.728977 kcal Electronic energy + Delta-G solvation = -30472.699059 eV Core-core repulsion = 26464.385867 eV Total energy + Delta-G solvation = -4008.313192 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.82274 -41.50005 -40.01248 -37.34438 -36.74400 -34.52305 -33.94585 -33.24040 -33.02321 -31.16846 -29.63133 -28.94498 -27.21224 -26.73355 -25.53017 -24.86006 -24.03236 -22.91220 -21.07545 -20.80144 -19.82806 -19.49144 -18.80487 -17.76508 -17.30318 -17.09682 -17.06144 -16.77431 -16.48036 -15.99815 -15.52395 -15.46091 -15.35530 -15.00492 -14.85061 -14.37232 -14.15400 -13.96762 -13.94345 -13.87288 -13.64654 -13.58139 -13.34987 -12.95392 -12.89273 -12.82367 -12.50211 -12.40290 -12.23421 -12.11708 -11.94393 -11.77046 -11.41875 -11.26494 -10.92362 -10.79378 -10.44044 -10.39132 -9.80877 -9.66247 -8.97375 -8.34219 -5.47955 0.40547 1.06542 1.55519 1.62170 1.68157 1.82528 2.09516 2.24385 2.59036 2.75769 3.10075 3.22288 3.32185 3.65606 3.75503 3.90519 3.97235 4.02143 4.09681 4.15013 4.23614 4.28569 4.30183 4.36985 4.47684 4.50910 4.68014 4.73576 4.76574 4.82184 4.84766 4.87948 4.89553 4.92041 4.99966 5.05686 5.09625 5.13480 5.19378 5.23220 5.44117 5.58385 5.73037 6.13191 6.19698 6.27158 6.35637 6.83317 6.88201 7.07325 7.64188 8.07876 8.89587 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018043 B = 0.003375 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.479791 B = 8294.478552 C = 9267.088288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.038 3.962 3 N -0.360 5.360 4 H 0.464 0.536 5 N -0.262 5.262 6 C -0.028 4.028 7 C 0.586 3.414 8 O -0.576 6.576 9 N -0.593 5.593 10 C 0.081 3.919 11 C -0.110 4.110 12 C 0.088 3.912 13 H 0.051 0.949 14 O -0.381 6.381 15 C 0.057 3.943 16 C 0.123 3.877 17 N -0.608 5.608 18 C -0.362 4.362 19 H 0.051 0.949 20 C -0.069 4.069 21 N -0.932 5.932 22 Si 1.117 2.883 23 H -0.290 1.290 24 H -0.275 1.275 25 H -0.279 1.279 26 C 0.135 3.865 27 H 0.059 0.941 28 C 0.124 3.876 29 C -0.175 4.175 30 C -0.076 4.076 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.157 0.843 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.115 0.885 39 H 0.050 0.950 40 H 0.060 0.940 41 H 0.007 0.993 42 H 0.252 0.748 43 H 0.051 0.949 44 H 0.045 0.955 45 H 0.065 0.935 46 H 0.093 0.907 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.535 16.764 -1.355 27.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 N -0.077 5.077 4 H 0.313 0.687 5 N -0.099 5.099 6 C -0.186 4.186 7 C 0.374 3.626 8 O -0.454 6.454 9 N -0.325 5.325 10 C -0.041 4.041 11 C -0.148 4.148 12 C 0.028 3.972 13 H 0.069 0.931 14 O -0.299 6.299 15 C -0.021 4.021 16 C -0.003 4.003 17 N -0.332 5.332 18 C -0.491 4.491 19 H 0.069 0.931 20 C -0.267 4.267 21 N -0.573 5.573 22 Si 0.940 3.060 23 H -0.216 1.216 24 H -0.201 1.201 25 H -0.205 1.205 26 C 0.027 3.973 27 H 0.077 0.923 28 C -0.002 4.002 29 C -0.185 4.185 30 C -0.134 4.134 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.084 0.916 35 H 0.173 0.827 36 H 0.129 0.871 37 H 0.101 0.899 38 H 0.133 0.867 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.025 0.975 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.083 0.917 46 H 0.112 0.888 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -19.663 16.151 -1.214 25.475 hybrid contribution -1.028 -0.194 -0.310 1.091 sum -20.692 15.957 -1.524 26.174 Atomic orbital electron populations 1.20564 0.82968 1.05662 1.04855 1.21669 0.96830 0.85431 1.04997 1.43482 1.02113 1.10647 1.51426 0.68707 1.72856 1.02558 1.13308 1.21163 1.21509 0.94151 0.90415 1.12536 1.17616 0.82596 0.86294 0.76108 1.90732 1.86974 1.15109 1.52628 1.48125 1.04849 1.08831 1.70672 1.22847 1.05905 0.77212 0.98150 1.21778 0.92187 1.01782 0.99054 1.22238 0.93367 0.92967 0.88600 0.93123 1.87756 1.24644 1.74521 1.43019 1.22986 0.83800 0.92827 1.02482 1.21433 0.94792 0.94399 0.89667 1.44572 1.09330 1.47807 1.31523 1.20165 1.25468 1.11146 0.92348 0.93130 1.27278 1.02198 0.94741 1.02435 1.70909 1.41326 1.42302 1.02760 0.82848 0.75034 0.75757 0.72321 1.21603 1.20062 1.20476 1.21712 0.86044 0.93943 0.95553 0.92291 1.21807 0.84168 0.94912 0.99266 1.20364 0.90271 0.98082 1.09811 1.20149 1.01759 0.89214 1.02249 0.88706 0.88326 0.88806 0.91607 0.82721 0.87084 0.89908 0.86712 0.93157 0.92177 0.97524 0.93820 0.93076 0.93624 0.91657 0.88790 0.93250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.26 71.24 0.73 0.32 16 2 C 0.04 0.56 7.23 41.40 0.30 0.86 16 3 N -0.36 -4.97 6.83 -47.93 -0.33 -5.30 16 4 H 0.46 2.08 8.96 -219.99 -1.97 0.11 16 5 N -0.26 -5.99 8.56 -48.17 -0.41 -6.40 16 6 C -0.03 -0.84 6.91 42.46 0.29 -0.55 16 7 C 0.59 23.08 7.70 86.75 0.67 23.75 16 8 O -0.58 -26.97 14.53 -3.93 -0.06 -27.03 16 9 N -0.59 -22.70 2.96 -822.49 -2.44 -25.14 16 10 C 0.08 2.41 6.17 86.34 0.53 2.94 16 11 C -0.11 -3.07 5.82 30.48 0.18 -2.89 16 12 C 0.09 3.22 2.73 30.49 0.08 3.30 16 13 H 0.05 1.89 8.11 -2.39 -0.02 1.87 16 14 O -0.38 -14.23 9.59 -148.98 -1.43 -15.66 16 15 C 0.06 2.18 6.96 71.92 0.50 2.68 16 16 C 0.12 5.98 4.38 86.19 0.38 6.35 16 17 N -0.61 -31.96 2.58 -673.17 -1.73 -33.70 16 18 C -0.36 -21.07 9.56 84.04 0.80 -20.27 16 19 H 0.05 2.97 7.97 -2.91 -0.02 2.95 16 20 C -0.07 -4.05 4.65 84.86 0.39 -3.66 16 21 N -0.93 -58.38 12.47 21.65 0.27 -58.11 16 22 Si 1.12 52.07 30.00 68.60 2.06 54.13 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 26 C 0.14 6.15 3.03 44.95 0.14 6.29 16 27 H 0.06 2.84 7.99 -2.39 -0.02 2.82 16 28 C 0.12 5.69 5.61 86.43 0.49 6.18 16 29 C -0.18 -4.28 6.25 -19.72 -0.12 -4.40 16 30 C -0.08 -1.79 9.78 71.24 0.70 -1.09 16 31 H 0.09 0.28 8.14 -2.39 -0.02 0.27 16 32 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 33 H 0.09 0.42 7.31 -2.39 -0.02 0.40 16 34 H 0.07 2.01 7.94 -2.39 -0.02 1.99 16 35 H 0.16 3.98 3.69 -88.45 -0.33 3.65 16 36 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.12 3.68 8.14 -2.39 -0.02 3.66 16 39 H 0.05 1.89 8.13 -2.38 -0.02 1.87 16 40 H 0.06 3.22 6.48 -2.38 -0.02 3.21 16 41 H 0.01 0.35 6.89 -2.39 -0.02 0.34 16 42 H 0.25 16.33 6.85 -92.71 -0.64 15.69 16 43 H 0.05 2.47 6.58 -2.39 -0.02 2.46 16 44 H 0.05 2.45 7.03 -2.39 -0.02 2.44 16 45 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.09 1.47 7.31 -2.39 -0.02 1.46 16 47 H 0.05 1.52 6.65 -2.38 -0.02 1.50 16 Total: -1.00 -81.28 362.60 0.84 -80.44 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -1.14 Total: 16.96 kcal Atomic # 6 Polarization: 13.76 SS G_CDS: 6.05 Total: 19.81 kcal Atomic # 7 Polarization: -124.01 SS G_CDS: -4.64 Total: -128.65 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -1.49 Total: -42.69 kcal Atomic # 14 Polarization: 52.07 SS G_CDS: 2.06 Total: 54.13 kcal Total: -81.28 0.84 -80.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074196992.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.165 kcal (2) G-P(sol) polarization free energy of solvation -81.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds