Wall clock time and date at job start Tue Mar 31 2020 19:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.35032 * 126.38830 * 2 1 4 4 H 0.96998 * 124.88069 * 0.02562 * 3 2 1 5 5 N 1.28461 * 110.22881 * 180.02562 * 3 2 1 6 6 C 1.31804 * 110.07842 * 359.97438 * 5 3 2 7 7 C 1.47710 * 126.52350 * 180.02562 * 6 5 3 8 8 O 1.21569 * 120.00504 * 174.23108 * 7 6 5 9 9 N 1.34782 * 119.99880 * 354.23108 * 7 6 5 10 10 C 1.46989 * 120.72199 * 353.76402 * 9 7 6 11 11 C 1.53150 * 108.44012 * 234.57560 * 10 9 7 12 12 C 1.52510 * 109.79690 * 305.47118 * 11 10 9 13 13 H 1.09003 * 108.92933 * 178.98382 * 12 11 10 14 14 O 1.42689 * 110.62334 * 298.68019 * 12 11 10 15 15 C 1.43070 * 113.87599 * 185.35095 * 14 12 11 16 16 C 1.53228 * 109.45184 * 298.35136 * 15 14 12 17 17 N 1.47184 * 108.69050 * 51.58804 * 16 15 14 18 18 C 1.36937 * 121.22286 * 129.03990 * 17 16 15 19 19 H 1.08001 * 119.99612 * 227.59186 * 18 17 16 20 20 C 1.38812 * 119.99932 * 47.58406 * 18 17 16 21 21 N 1.31611 * 119.99862 * 181.13139 * 20 18 17 22 22 Si 1.86803 * 119.99936 * 1.13283 * 20 18 17 23 23 H 1.48505 * 109.46795 * 83.00111 * 22 20 18 24 24 H 1.48503 * 109.46836 * 203.00189 * 22 20 18 25 25 H 1.48495 * 109.47080 * 323.00425 * 22 20 18 26 26 C 1.47597 * 117.55354 * 309.06213 * 17 16 15 27 27 H 1.09000 * 111.16020 * 172.78487 * 26 17 16 28 28 C 1.46790 * 120.72350 * 173.78102 * 9 7 6 29 29 C 1.35366 * 126.38023 * 180.32918 * 2 1 3 30 30 C 1.50706 * 127.25181 * 359.97438 * 29 2 1 31 31 H 1.08994 * 109.47383 * 89.97236 * 1 2 3 32 32 H 1.08997 * 109.47357 * 209.97640 * 1 2 3 33 33 H 1.09007 * 109.46629 * 329.97459 * 1 2 3 34 34 H 1.08995 * 109.64034 * 114.88384 * 10 9 7 35 35 H 1.09000 * 109.81337 * 354.36357 * 10 9 7 36 36 H 1.08999 * 109.41685 * 185.37145 * 11 10 9 37 37 H 1.09001 * 109.42021 * 65.56716 * 11 10 9 38 38 H 1.08999 * 109.47784 * 58.35122 * 15 14 12 39 39 H 1.09005 * 109.47425 * 178.35833 * 15 14 12 40 40 H 1.09000 * 109.60117 * 171.35384 * 16 15 14 41 41 H 1.08996 * 109.60076 * 291.82985 * 16 15 14 42 42 H 0.96999 * 120.00106 * 180.02562 * 21 20 18 43 43 H 1.08995 * 109.52133 * 245.58994 * 28 9 7 44 44 H 1.08999 * 109.52008 * 5.71508 * 28 9 7 45 45 H 1.08996 * 109.46862 * 270.18809 * 30 29 2 46 46 H 1.09000 * 109.47045 * 30.19047 * 30 29 2 47 47 H 1.08997 * 109.46577 * 150.19024 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3081 1.0870 0.0000 4 1 1.9966 2.0056 0.0004 5 7 3.5420 0.7295 -0.0005 6 6 3.6321 -0.5854 -0.0004 7 6 4.8764 -1.3814 -0.0003 8 8 4.8241 -2.5913 0.1057 9 7 6.0698 -0.7662 -0.1178 10 6 6.1476 0.6775 -0.3830 11 6 7.0097 0.8952 -1.6300 12 6 8.3639 0.2180 -1.4463 13 1 8.9585 0.3662 -2.3478 14 8 9.0603 0.7802 -0.3351 15 6 10.3907 0.2798 -0.1721 16 6 10.3402 -1.2303 0.0830 17 7 9.5228 -1.8590 -0.9672 18 6 9.9850 -2.9344 -1.6779 19 1 9.9020 -2.9460 -2.7546 20 6 10.5603 -4.0094 -1.0144 21 7 11.0246 -5.0331 -1.6990 22 14 10.6753 -4.0032 0.8501 23 1 9.3872 -4.4652 1.4269 24 1 11.7660 -4.9139 1.2817 25 1 10.9639 -2.6257 1.3236 26 6 8.1869 -1.2875 -1.2264 27 1 7.7260 -1.7458 -2.1014 28 6 7.3203 -1.5233 0.0161 29 6 2.3100 -1.0898 -0.0063 30 6 1.8853 -2.5358 -0.0140 31 1 -0.3634 0.0005 -1.0276 32 1 -0.3634 -0.8902 0.5134 33 1 -0.3633 0.8898 0.5143 34 1 6.6018 1.1826 0.4693 35 1 5.1477 1.0760 -0.5547 36 1 7.1572 1.9637 -1.7865 37 1 6.5062 0.4689 -2.4976 38 1 10.9663 0.4764 -1.0766 39 1 10.8644 0.7758 0.6751 40 1 11.3499 -1.6399 0.0549 41 1 9.8926 -1.4215 1.0583 42 1 11.4263 -5.7845 -1.2354 43 1 7.8565 -1.1870 0.9034 44 1 7.0947 -2.5858 0.1076 45 1 1.7800 -2.8890 1.0117 46 1 0.9304 -2.6312 -0.5310 47 1 2.6383 -3.1328 -0.5285 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074196993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:24 Heat of formation + Delta-G solvation = 47.397680 kcal Electronic energy + Delta-G solvation = -30571.148015 eV Core-core repulsion = 26564.468261 eV Total energy + Delta-G solvation = -4006.679754 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.89490 -39.98090 -38.47740 -35.81308 -34.74772 -33.67376 -32.75132 -31.74527 -31.62622 -29.92779 -28.62918 -27.57479 -26.33217 -25.39729 -23.92648 -23.16978 -22.77914 -21.40504 -20.16882 -19.40670 -18.44420 -17.82153 -16.99323 -16.50660 -16.16192 -15.69229 -15.55392 -15.49671 -15.03283 -14.39830 -14.09247 -14.02846 -13.95819 -13.64079 -13.36137 -13.13319 -13.06921 -12.89529 -12.70797 -12.60406 -12.52925 -12.45604 -12.17965 -11.87306 -11.55384 -11.34361 -11.07541 -10.89450 -10.79761 -10.63820 -10.15874 -10.03843 -9.77955 -9.62266 -9.37735 -9.37059 -9.05095 -8.81427 -8.37198 -8.23876 -6.66828 -5.98538 -3.62174 1.51454 1.95234 2.63033 3.28742 3.35702 3.45177 3.51030 3.56109 4.22439 4.33531 4.43588 4.53211 4.66950 4.84065 5.04358 5.10513 5.13343 5.23638 5.29595 5.36048 5.45113 5.51443 5.58929 5.66900 5.72705 5.77964 5.79708 5.87962 5.92803 5.96239 6.03285 6.09731 6.12640 6.17329 6.25534 6.35222 6.48202 6.50051 6.64837 6.68771 6.76978 6.80731 7.00281 7.65505 7.74213 7.84012 8.08746 8.36221 8.47463 8.87447 9.64253 10.09566 11.15154 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017013 B = 0.003745 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.387281 B = 7475.588867 C = 8524.613011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.007 3.993 3 N -0.387 5.387 4 H 0.442 0.558 5 N -0.258 5.258 6 C 0.004 3.996 7 C 0.594 3.406 8 O -0.530 6.530 9 N -0.592 5.592 10 C 0.091 3.909 11 C -0.121 4.121 12 C 0.079 3.921 13 H 0.054 0.946 14 O -0.383 6.383 15 C 0.046 3.954 16 C 0.098 3.902 17 N -0.600 5.600 18 C -0.274 4.274 19 H 0.078 0.922 20 C 0.045 3.955 21 N -0.906 5.906 22 Si 0.855 3.145 23 H -0.280 1.280 24 H -0.300 1.300 25 H -0.233 1.233 26 C 0.138 3.862 27 H 0.085 0.915 28 C 0.102 3.898 29 C -0.144 4.144 30 C -0.078 4.078 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.123 0.877 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.048 0.952 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.035 0.965 42 H 0.265 0.735 43 H 0.066 0.934 44 H 0.091 0.909 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.196 15.778 3.577 25.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.119 4.119 3 N -0.100 5.100 4 H 0.286 0.714 5 N -0.093 5.093 6 C -0.157 4.157 7 C 0.380 3.620 8 O -0.405 6.405 9 N -0.325 5.325 10 C -0.032 4.032 11 C -0.160 4.160 12 C 0.020 3.980 13 H 0.072 0.928 14 O -0.303 6.303 15 C -0.032 4.032 16 C -0.027 4.027 17 N -0.324 5.324 18 C -0.402 4.402 19 H 0.095 0.905 20 C -0.157 4.157 21 N -0.546 5.546 22 Si 0.683 3.317 23 H -0.207 1.207 24 H -0.227 1.227 25 H -0.157 1.157 26 C 0.030 3.970 27 H 0.103 0.897 28 C -0.022 4.022 29 C -0.154 4.154 30 C -0.136 4.136 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.140 0.860 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.110 0.890 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.492 15.962 3.751 24.714 hybrid contribution -0.141 -0.454 0.839 0.964 sum -18.632 15.508 4.590 24.672 Atomic orbital electron populations 1.20328 0.86692 1.03821 1.03243 1.21180 0.95104 0.86974 1.08622 1.43363 1.03269 1.09322 1.54021 0.71375 1.73382 1.00682 1.14847 1.20421 1.21989 0.95040 0.89446 1.09216 1.17009 0.81472 0.86273 0.77285 1.90786 1.86081 1.12946 1.50695 1.48028 1.05499 1.09674 1.69249 1.22363 1.03051 0.80325 0.97500 1.21796 0.94517 1.01077 0.98604 1.22271 0.92542 0.93975 0.89260 0.92767 1.87744 1.27179 1.65575 1.49758 1.23141 0.83402 0.96204 1.00484 1.22478 0.96748 0.91304 0.92146 1.44397 1.10582 1.35182 1.42275 1.18699 1.37772 0.92729 0.91010 0.90473 1.25711 0.97710 0.94212 0.98082 1.69763 1.41390 1.07743 1.35747 0.87701 0.77751 0.79509 0.86760 1.20664 1.22682 1.15728 1.21699 0.86714 0.92029 0.96514 0.89687 1.22318 0.82369 0.97480 1.00001 1.20126 0.90646 0.96700 1.07948 1.20177 1.01279 0.89747 1.02388 0.90378 0.89575 0.91214 0.91201 0.86024 0.90515 0.90561 0.93383 0.89947 0.90317 0.94688 0.92552 0.91606 0.89037 0.91447 0.92122 0.89795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.14 36.01 0.37 -0.04 16 2 C 0.01 0.06 7.23 -82.21 -0.59 -0.53 16 3 N -0.39 -3.34 6.83 33.50 0.23 -3.12 16 4 H 0.44 2.02 8.96 -190.45 -1.71 0.31 16 5 N -0.26 -3.18 8.67 33.42 0.29 -2.89 16 6 C 0.00 0.06 6.85 -82.77 -0.57 -0.51 16 7 C 0.59 10.86 7.69 -12.39 -0.10 10.77 16 8 O -0.53 -11.26 14.62 5.31 0.08 -11.18 16 9 N -0.59 -10.52 2.96 -173.94 -0.52 -11.04 16 10 C 0.09 1.34 5.98 -3.70 -0.02 1.32 16 11 C -0.12 -1.73 5.82 -26.90 -0.16 -1.89 16 12 C 0.08 1.39 2.72 -26.89 -0.07 1.32 16 13 H 0.05 0.99 8.12 -51.93 -0.42 0.57 16 14 O -0.38 -6.90 9.59 -35.23 -0.34 -7.24 16 15 C 0.05 0.81 6.97 37.28 0.26 1.07 16 16 C 0.10 2.08 3.51 -3.55 -0.01 2.07 16 17 N -0.60 -14.23 2.25 -163.87 -0.37 -14.60 16 18 C -0.27 -7.66 10.03 -15.06 -0.15 -7.82 16 19 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 20 C 0.04 1.30 5.46 -17.43 -0.10 1.20 16 21 N -0.91 -27.97 13.97 55.49 0.78 -27.20 16 22 Si 0.85 21.49 26.10 -169.99 -4.44 17.05 16 23 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 25 H -0.23 -5.21 3.78 56.52 0.21 -4.99 16 26 C 0.14 2.88 3.00 -67.08 -0.20 2.68 16 27 H 0.09 1.88 8.03 -51.93 -0.42 1.46 16 28 C 0.10 2.09 5.63 -3.72 -0.02 2.07 16 29 C -0.14 -1.82 6.25 -104.40 -0.65 -2.47 16 30 C -0.08 -0.91 9.56 36.01 0.34 -0.56 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.39 7.98 -51.93 -0.41 -0.02 16 33 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.07 1.05 7.94 -51.93 -0.41 0.64 16 35 H 0.12 1.63 4.10 -78.29 -0.32 1.31 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.08 1.73 5.92 -51.93 -0.31 1.43 16 41 H 0.04 0.76 5.51 -51.93 -0.29 0.47 16 42 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 43 H 0.07 1.38 6.56 -51.93 -0.34 1.04 16 44 H 0.09 2.14 6.99 -51.93 -0.36 1.78 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.06 0.53 8.00 -51.93 -0.42 0.11 16 47 H 0.08 1.19 6.85 -51.93 -0.36 0.84 16 LS Contribution 358.18 15.07 5.40 5.40 Total: -1.00 -34.62 358.18 -9.03 -43.64 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -8.47 Total: 2.49 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: -1.67 Total: 8.68 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: 0.41 Total: -58.84 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.26 Total: -18.42 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.44 Total: 17.05 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.62 -9.03 -43.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074196993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.042 kcal (2) G-P(sol) polarization free energy of solvation -34.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds