Wall clock time and date at job start Tue Mar 31 2020 19:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.35032 * 126.38830 * 2 1 4 4 H 0.96998 * 124.88069 * 0.02562 * 3 2 1 5 5 N 1.28461 * 110.22881 * 180.02562 * 3 2 1 6 6 C 1.31804 * 110.07842 * 359.97438 * 5 3 2 7 7 C 1.47710 * 126.52350 * 180.02562 * 6 5 3 8 8 O 1.21569 * 120.00504 * 174.23108 * 7 6 5 9 9 N 1.34782 * 119.99880 * 354.23108 * 7 6 5 10 10 C 1.46989 * 120.72199 * 353.76402 * 9 7 6 11 11 C 1.53150 * 108.44012 * 234.57560 * 10 9 7 12 12 C 1.52510 * 109.79690 * 305.47118 * 11 10 9 13 13 H 1.09003 * 108.92933 * 178.98382 * 12 11 10 14 14 O 1.42689 * 110.62334 * 298.68019 * 12 11 10 15 15 C 1.43070 * 113.87599 * 185.35095 * 14 12 11 16 16 C 1.53228 * 109.45184 * 298.35136 * 15 14 12 17 17 N 1.47184 * 108.69050 * 51.58804 * 16 15 14 18 18 C 1.36937 * 121.22286 * 129.03990 * 17 16 15 19 19 H 1.08001 * 119.99612 * 227.59186 * 18 17 16 20 20 C 1.38812 * 119.99932 * 47.58406 * 18 17 16 21 21 N 1.31611 * 119.99862 * 181.13139 * 20 18 17 22 22 Si 1.86803 * 119.99936 * 1.13283 * 20 18 17 23 23 H 1.48505 * 109.46795 * 83.00111 * 22 20 18 24 24 H 1.48503 * 109.46836 * 203.00189 * 22 20 18 25 25 H 1.48495 * 109.47080 * 323.00425 * 22 20 18 26 26 C 1.47597 * 117.55354 * 309.06213 * 17 16 15 27 27 H 1.09000 * 111.16020 * 172.78487 * 26 17 16 28 28 C 1.46790 * 120.72350 * 173.78102 * 9 7 6 29 29 C 1.35366 * 126.38023 * 180.32918 * 2 1 3 30 30 C 1.50706 * 127.25181 * 359.97438 * 29 2 1 31 31 H 1.08994 * 109.47383 * 89.97236 * 1 2 3 32 32 H 1.08997 * 109.47357 * 209.97640 * 1 2 3 33 33 H 1.09007 * 109.46629 * 329.97459 * 1 2 3 34 34 H 1.08995 * 109.64034 * 114.88384 * 10 9 7 35 35 H 1.09000 * 109.81337 * 354.36357 * 10 9 7 36 36 H 1.08999 * 109.41685 * 185.37145 * 11 10 9 37 37 H 1.09001 * 109.42021 * 65.56716 * 11 10 9 38 38 H 1.08999 * 109.47784 * 58.35122 * 15 14 12 39 39 H 1.09005 * 109.47425 * 178.35833 * 15 14 12 40 40 H 1.09000 * 109.60117 * 171.35384 * 16 15 14 41 41 H 1.08996 * 109.60076 * 291.82985 * 16 15 14 42 42 H 0.96999 * 120.00106 * 180.02562 * 21 20 18 43 43 H 1.08995 * 109.52133 * 245.58994 * 28 9 7 44 44 H 1.08999 * 109.52008 * 5.71508 * 28 9 7 45 45 H 1.08996 * 109.46862 * 270.18809 * 30 29 2 46 46 H 1.09000 * 109.47045 * 30.19047 * 30 29 2 47 47 H 1.08997 * 109.46577 * 150.19024 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3081 1.0870 0.0000 4 1 1.9966 2.0056 0.0004 5 7 3.5420 0.7295 -0.0005 6 6 3.6321 -0.5854 -0.0004 7 6 4.8764 -1.3814 -0.0003 8 8 4.8241 -2.5913 0.1057 9 7 6.0698 -0.7662 -0.1178 10 6 6.1476 0.6775 -0.3830 11 6 7.0097 0.8952 -1.6300 12 6 8.3639 0.2180 -1.4463 13 1 8.9585 0.3662 -2.3478 14 8 9.0603 0.7802 -0.3351 15 6 10.3907 0.2798 -0.1721 16 6 10.3402 -1.2303 0.0830 17 7 9.5228 -1.8590 -0.9672 18 6 9.9850 -2.9344 -1.6779 19 1 9.9020 -2.9460 -2.7546 20 6 10.5603 -4.0094 -1.0144 21 7 11.0246 -5.0331 -1.6990 22 14 10.6753 -4.0032 0.8501 23 1 9.3872 -4.4652 1.4269 24 1 11.7660 -4.9139 1.2817 25 1 10.9639 -2.6257 1.3236 26 6 8.1869 -1.2875 -1.2264 27 1 7.7260 -1.7458 -2.1014 28 6 7.3203 -1.5233 0.0161 29 6 2.3100 -1.0898 -0.0063 30 6 1.8853 -2.5358 -0.0140 31 1 -0.3634 0.0005 -1.0276 32 1 -0.3634 -0.8902 0.5134 33 1 -0.3633 0.8898 0.5143 34 1 6.6018 1.1826 0.4693 35 1 5.1477 1.0760 -0.5547 36 1 7.1572 1.9637 -1.7865 37 1 6.5062 0.4689 -2.4976 38 1 10.9663 0.4764 -1.0766 39 1 10.8644 0.7758 0.6751 40 1 11.3499 -1.6399 0.0549 41 1 9.8926 -1.4215 1.0583 42 1 11.4263 -5.7845 -1.2354 43 1 7.8565 -1.1870 0.9034 44 1 7.0947 -2.5858 0.1076 45 1 1.7800 -2.8890 1.0117 46 1 0.9304 -2.6312 -0.5310 47 1 2.6383 -3.1328 -0.5285 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074196993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:23 Heat of formation + Delta-G solvation = 21.755390 kcal Electronic energy + Delta-G solvation = -30572.259948 eV Core-core repulsion = 26564.468261 eV Total energy + Delta-G solvation = -4007.791687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.78517 -41.46600 -39.96480 -37.26141 -36.54703 -34.48357 -33.97213 -33.64841 -32.96509 -31.38893 -29.69588 -29.10283 -27.15313 -26.75458 -25.57416 -24.80844 -24.10217 -22.95798 -21.05838 -20.86249 -19.80527 -19.03181 -18.73558 -17.72500 -17.48783 -17.18731 -17.04528 -16.99687 -16.36651 -16.02373 -15.77568 -15.51227 -15.01723 -14.78762 -14.75030 -14.53401 -14.12703 -14.03050 -13.98016 -13.87652 -13.73214 -13.58790 -13.35387 -13.07081 -12.99398 -12.85340 -12.65152 -12.54662 -12.40390 -12.14867 -12.06486 -11.47296 -11.30123 -11.24441 -10.91612 -10.85059 -10.37105 -10.33927 -9.73838 -9.60979 -8.61992 -8.25054 -5.87495 0.44921 1.08575 1.30823 1.39367 1.41705 1.72734 2.12900 2.27851 2.38634 2.81690 3.05854 3.11699 3.26652 3.70689 3.79032 3.94083 4.03794 4.06827 4.15280 4.19976 4.26738 4.33452 4.35356 4.38515 4.51440 4.57602 4.69991 4.80499 4.81588 4.86377 4.88125 4.90077 4.93230 4.93996 5.01008 5.06467 5.10931 5.12924 5.21730 5.25201 5.47853 5.58935 5.89169 6.10810 6.15627 6.26704 6.39077 6.82562 6.85911 7.11081 7.43836 7.95659 8.91463 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017013 B = 0.003745 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.387281 B = 7475.588867 C = 8524.613011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.035 3.965 3 N -0.361 5.361 4 H 0.464 0.536 5 N -0.260 5.260 6 C -0.030 4.030 7 C 0.587 3.413 8 O -0.575 6.575 9 N -0.594 5.594 10 C 0.094 3.906 11 C -0.114 4.114 12 C 0.088 3.912 13 H 0.051 0.949 14 O -0.377 6.377 15 C 0.053 3.947 16 C 0.090 3.910 17 N -0.613 5.613 18 C -0.262 4.262 19 H 0.037 0.963 20 C -0.011 4.011 21 N -0.954 5.954 22 Si 0.904 3.096 23 H -0.300 1.300 24 H -0.303 1.303 25 H -0.180 1.180 26 C 0.135 3.865 27 H 0.059 0.941 28 C 0.117 3.883 29 C -0.176 4.176 30 C -0.074 4.074 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.142 0.858 36 H 0.112 0.888 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.122 0.878 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.264 0.736 43 H 0.066 0.934 44 H 0.050 0.950 45 H 0.065 0.935 46 H 0.092 0.908 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.654 20.309 5.018 30.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 N -0.078 5.078 4 H 0.313 0.687 5 N -0.097 5.097 6 C -0.188 4.188 7 C 0.375 3.625 8 O -0.453 6.453 9 N -0.326 5.326 10 C -0.028 4.028 11 C -0.153 4.153 12 C 0.029 3.971 13 H 0.069 0.931 14 O -0.296 6.296 15 C -0.024 4.024 16 C -0.034 4.034 17 N -0.338 5.338 18 C -0.392 4.392 19 H 0.055 0.945 20 C -0.208 4.208 21 N -0.597 5.597 22 Si 0.731 3.269 23 H -0.228 1.228 24 H -0.230 1.230 25 H -0.103 1.103 26 C 0.028 3.972 27 H 0.077 0.923 28 C -0.008 4.008 29 C -0.186 4.186 30 C -0.132 4.132 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.159 0.841 36 H 0.130 0.870 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.140 0.860 40 H 0.090 0.910 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.084 0.916 46 H 0.110 0.890 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -20.960 20.597 5.193 29.842 hybrid contribution 0.465 -1.804 0.295 1.886 sum -20.495 18.794 5.488 28.344 Atomic orbital electron populations 1.20549 0.83099 1.05573 1.04842 1.21659 0.96803 0.85507 1.05186 1.43456 1.02182 1.10590 1.51545 0.68740 1.73155 1.02548 1.13370 1.20583 1.21530 0.94191 0.90467 1.12649 1.17569 0.82611 0.86163 0.76184 1.90751 1.86885 1.15094 1.52614 1.48085 1.04424 1.10834 1.69266 1.22576 1.04387 0.78129 0.97733 1.21825 0.92114 1.02790 0.98528 1.22193 0.94482 0.91360 0.89103 0.93134 1.87768 1.27268 1.64953 1.49624 1.23131 0.83623 0.93400 1.02292 1.22564 0.95753 0.93994 0.91124 1.44449 1.12219 1.34683 1.42466 1.18517 1.36708 0.94204 0.89778 0.94542 1.26413 0.97949 0.93817 1.02653 1.69903 1.43437 1.08792 1.37587 0.86952 0.76440 0.82154 0.81363 1.22786 1.23001 1.10291 1.21746 0.85339 0.94451 0.95657 0.92268 1.21857 0.83789 0.95631 0.99550 1.20366 0.90416 0.97978 1.09831 1.20108 1.01593 0.89241 1.02209 0.88670 0.88978 0.88379 0.90793 0.84138 0.86997 0.90224 0.93110 0.86014 0.91009 0.94427 0.92726 0.91613 0.93170 0.91630 0.88972 0.93465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.14 71.24 0.72 0.32 16 2 C 0.04 0.52 7.23 41.40 0.30 0.81 16 3 N -0.36 -4.83 6.83 -47.93 -0.33 -5.16 16 4 H 0.46 1.93 8.96 -220.00 -1.97 -0.04 16 5 N -0.26 -5.73 8.67 -48.18 -0.42 -6.14 16 6 C -0.03 -0.88 6.85 42.46 0.29 -0.59 16 7 C 0.59 22.27 7.69 86.75 0.67 22.93 16 8 O -0.58 -26.31 14.62 -3.93 -0.06 -26.37 16 9 N -0.59 -21.37 2.96 -822.50 -2.44 -23.81 16 10 C 0.09 2.56 5.98 86.34 0.52 3.08 16 11 C -0.11 -2.98 5.82 30.48 0.18 -2.80 16 12 C 0.09 2.98 2.72 30.49 0.08 3.07 16 13 H 0.05 1.78 8.12 -2.39 -0.02 1.76 16 14 O -0.38 -12.41 9.59 -148.98 -1.43 -13.84 16 15 C 0.05 1.73 6.97 72.06 0.50 2.23 16 16 C 0.09 3.67 3.51 86.33 0.30 3.98 16 17 N -0.61 -29.71 2.25 -672.35 -1.52 -31.22 16 18 C -0.26 -15.46 10.03 84.03 0.84 -14.62 16 19 H 0.04 2.41 8.06 -2.91 -0.02 2.39 16 20 C -0.01 -0.67 5.46 84.86 0.46 -0.21 16 21 N -0.95 -61.96 13.97 21.65 0.30 -61.65 16 22 Si 0.90 45.45 26.10 68.60 1.79 47.24 16 23 H -0.30 -16.04 7.11 99.48 0.71 -15.34 16 24 H -0.30 -15.28 7.11 99.48 0.71 -14.57 16 25 H -0.18 -7.60 3.78 99.48 0.38 -7.22 16 26 C 0.14 5.80 3.00 44.95 0.13 5.93 16 27 H 0.06 2.79 8.03 -2.39 -0.02 2.78 16 28 C 0.12 4.95 5.63 86.43 0.49 5.43 16 29 C -0.18 -4.22 6.25 -19.72 -0.12 -4.34 16 30 C -0.07 -1.72 9.56 71.24 0.68 -1.04 16 31 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.09 0.44 7.98 -2.39 -0.02 0.42 16 33 H 0.10 0.00 8.14 -2.38 -0.02 -0.02 16 34 H 0.07 2.00 7.94 -2.39 -0.02 1.98 16 35 H 0.14 3.38 4.10 -36.48 -0.15 3.23 16 36 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.12 3.08 8.14 -2.38 -0.02 3.06 16 40 H 0.07 3.04 5.92 -2.39 -0.01 3.03 16 41 H 0.04 1.54 5.51 -2.39 -0.01 1.53 16 42 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 43 H 0.07 2.76 6.56 -2.39 -0.02 2.74 16 44 H 0.05 2.52 6.99 -2.39 -0.02 2.51 16 45 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.09 1.46 8.00 -2.39 -0.02 1.44 16 47 H 0.05 1.44 6.85 -2.39 -0.02 1.42 16 Total: -1.00 -83.08 358.18 0.53 -82.56 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -1.43 Total: 14.21 kcal Atomic # 6 Polarization: 18.14 SS G_CDS: 6.05 Total: 24.19 kcal Atomic # 7 Polarization: -123.60 SS G_CDS: -4.39 Total: -127.99 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -1.49 Total: -40.21 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.79 Total: 47.24 kcal Total: -83.08 0.53 -82.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074196993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.312 kcal (2) G-P(sol) polarization free energy of solvation -83.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds