Wall clock time and date at job start Tue Mar 31 2020 19:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.35030 * 126.38420 * 2 1 4 4 H 0.96999 * 124.88663 * 0.02711 * 3 2 1 5 5 N 1.28475 * 110.23214 * 180.02562 * 3 2 1 6 6 C 1.31811 * 110.06952 * 359.97438 * 5 3 2 7 7 C 1.47712 * 126.51368 * 179.97438 * 6 5 3 8 8 O 1.21581 * 119.99539 * 174.00870 * 7 6 5 9 9 N 1.34767 * 120.00407 * 354.01022 * 7 6 5 10 10 C 1.46844 * 120.40997 * 354.23264 * 9 7 6 11 11 C 1.51966 * 109.38103 * 231.88791 * 10 9 7 12 12 C 1.52787 * 109.55477 * 306.69465 * 11 10 9 13 13 H 1.08995 * 108.96153 * 302.42916 * 12 11 10 14 14 O 1.42606 * 111.10905 * 181.89478 * 12 11 10 15 15 C 1.43148 * 113.62994 * 176.38671 * 14 12 11 16 16 C 1.53201 * 109.74019 * 61.69046 * 15 14 12 17 17 N 1.47357 * 108.79806 * 308.78873 * 16 15 14 18 18 C 1.36939 * 121.30154 * 230.22399 * 17 16 15 19 19 H 1.07997 * 120.00160 * 152.03663 * 18 17 16 20 20 C 1.38814 * 119.99713 * 332.03067 * 18 17 16 21 21 N 1.31621 * 120.00382 * 343.93377 * 20 18 17 22 22 Si 1.86807 * 119.99757 * 163.92999 * 20 18 17 23 23 H 1.48495 * 109.47195 * 94.95783 * 22 20 18 24 24 H 1.48495 * 109.47005 * 214.95902 * 22 20 18 25 25 H 1.48502 * 109.46864 * 334.95657 * 22 20 18 26 26 C 1.46869 * 117.39137 * 50.24098 * 17 16 15 27 27 H 1.09001 * 109.65257 * 67.65068 * 26 17 16 28 28 C 1.47131 * 120.41453 * 174.21511 * 9 7 6 29 29 C 1.35363 * 126.38715 * 180.31628 * 2 1 3 30 30 C 1.50709 * 127.24984 * 359.97438 * 29 2 1 31 31 H 1.08995 * 109.46729 * 89.98003 * 1 2 3 32 32 H 1.09005 * 109.46814 * 209.97958 * 1 2 3 33 33 H 1.08996 * 109.46952 * 329.97869 * 1 2 3 34 34 H 1.08997 * 109.51000 * 352.16465 * 10 9 7 35 35 H 1.08998 * 109.50907 * 112.25275 * 10 9 7 36 36 H 1.08996 * 109.72616 * 186.34573 * 11 10 9 37 37 H 1.09008 * 108.69016 * 66.40533 * 11 10 9 38 38 H 1.08998 * 109.42752 * 181.77130 * 15 14 12 39 39 H 1.08994 * 109.42839 * 301.60817 * 15 14 12 40 40 H 1.08999 * 109.58075 * 188.99539 * 16 15 14 41 41 H 1.08996 * 109.58120 * 68.58103 * 16 15 14 42 42 H 0.96999 * 120.00241 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.72612 * 7.12452 * 28 9 7 44 44 H 1.09003 * 109.72466 * 246.45584 * 28 9 7 45 45 H 1.09000 * 109.46642 * 270.14164 * 30 29 2 46 46 H 1.08998 * 109.46739 * 30.12997 * 30 29 2 47 47 H 1.08999 * 109.47326 * 150.13768 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3080 1.0871 0.0000 4 1 1.9966 2.0057 0.0004 5 7 3.5421 0.7297 -0.0005 6 6 3.6321 -0.5854 -0.0004 7 6 4.8766 -1.3811 -0.0014 8 8 4.8246 -2.5908 0.1088 9 7 6.0695 -0.7663 -0.1244 10 6 6.1384 0.6773 -0.3842 11 6 7.0341 0.9313 -1.5853 12 6 8.3857 0.2530 -1.3679 13 1 8.8290 0.6336 -0.4478 14 8 9.2692 0.5071 -2.4581 15 6 10.5806 -0.0358 -2.2725 16 6 10.4966 -1.5604 -2.1477 17 7 9.4894 -1.8985 -1.1266 18 6 9.7712 -2.7734 -0.1116 19 1 9.2581 -2.6860 0.8347 20 6 10.7163 -3.7726 -0.2990 21 7 11.1089 -4.0875 -1.5152 22 14 11.4311 -4.6705 1.1750 23 1 10.6696 -5.9238 1.4082 24 1 12.8554 -4.9982 0.9120 25 1 11.3366 -3.8029 2.3765 26 6 8.1713 -1.2606 -1.2405 27 1 7.6586 -1.6343 -2.1268 28 6 7.3190 -1.5331 0.0004 29 6 2.3100 -1.0897 -0.0060 30 6 1.8855 -2.5357 -0.0135 31 1 -0.3632 0.0004 -1.0276 32 1 -0.3633 -0.8902 0.5135 33 1 -0.3633 0.8898 0.5141 34 1 5.1374 1.0593 -0.5845 35 1 6.5541 1.1844 0.4865 36 1 7.1801 2.0036 -1.7151 37 1 6.5553 0.5159 -2.4722 38 1 11.2049 0.2241 -3.1274 39 1 11.0194 0.3786 -1.3649 40 1 11.4671 -1.9565 -1.8488 41 1 10.2039 -1.9898 -3.1058 42 1 11.7691 -4.7860 -1.6462 43 1 7.0927 -2.5974 0.0647 44 1 7.8575 -1.2162 0.8935 45 1 1.7811 -2.8889 1.0124 46 1 0.9301 -2.6311 -0.5295 47 1 2.6380 -3.1327 -0.5286 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074196994.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:27 Heat of formation + Delta-G solvation = 34.727785 kcal Electronic energy + Delta-G solvation = -30262.851101 eV Core-core repulsion = 26255.621939 eV Total energy + Delta-G solvation = -4007.229162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.90508 -39.85133 -38.35430 -36.02558 -34.64644 -33.68644 -32.78077 -31.54572 -31.32694 -29.84057 -28.59512 -27.05060 -26.33402 -25.48788 -23.80772 -23.44180 -21.85962 -21.04145 -20.17140 -19.63280 -18.78013 -17.83252 -16.82484 -16.50410 -16.15047 -15.67215 -15.31261 -15.00528 -14.86349 -14.38878 -14.12333 -13.94003 -13.65224 -13.52035 -13.32113 -13.12186 -12.98216 -12.91651 -12.80594 -12.61351 -12.52450 -12.42654 -12.01038 -11.72887 -11.22602 -11.10905 -10.90288 -10.83317 -10.59002 -10.33823 -10.18599 -10.13876 -9.92185 -9.67967 -9.52684 -9.37734 -8.92158 -8.82032 -8.48706 -8.23501 -6.67220 -5.79706 -3.24605 1.50258 1.94698 2.62132 3.24652 3.39076 3.46166 3.47947 3.54163 4.24224 4.41242 4.44276 4.48765 4.66733 5.02669 5.10389 5.12247 5.15822 5.33642 5.38057 5.45328 5.50853 5.56969 5.58665 5.74539 5.78012 5.83654 5.84607 5.97007 6.00153 6.06230 6.13800 6.17047 6.22913 6.34433 6.39329 6.48462 6.54741 6.72540 6.74746 6.89582 6.97611 7.17958 7.53276 7.62113 7.76869 7.80569 7.95418 8.36991 8.44464 9.14491 9.78048 10.36681 11.28637 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015665 B = 0.003527 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.951622 B = 7937.809210 C = 9254.396181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.008 3.992 3 N -0.386 5.386 4 H 0.442 0.558 5 N -0.259 5.259 6 C 0.003 3.997 7 C 0.597 3.403 8 O -0.527 6.527 9 N -0.597 5.597 10 C 0.091 3.909 11 C -0.123 4.123 12 C 0.077 3.923 13 H 0.051 0.949 14 O -0.389 6.389 15 C 0.039 3.961 16 C 0.144 3.856 17 N -0.587 5.587 18 C -0.258 4.258 19 H 0.071 0.929 20 C 0.007 3.993 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.278 1.278 26 C 0.138 3.862 27 H 0.037 0.963 28 C 0.124 3.876 29 C -0.144 4.144 30 C -0.078 4.078 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.128 0.872 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.040 0.960 40 H 0.093 0.907 41 H 0.028 0.972 42 H 0.254 0.746 43 H 0.103 0.897 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.077 13.096 2.103 23.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 N -0.099 5.099 4 H 0.287 0.713 5 N -0.095 5.095 6 C -0.157 4.157 7 C 0.382 3.618 8 O -0.401 6.401 9 N -0.330 5.330 10 C -0.032 4.032 11 C -0.162 4.162 12 C 0.018 3.982 13 H 0.069 0.931 14 O -0.309 6.309 15 C -0.039 4.039 16 C 0.019 3.981 17 N -0.312 5.312 18 C -0.387 4.387 19 H 0.089 0.911 20 C -0.192 4.192 21 N -0.544 5.544 22 Si 0.732 3.268 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.203 1.203 26 C 0.030 3.970 27 H 0.054 0.946 28 C 0.003 3.997 29 C -0.154 4.154 30 C -0.136 4.136 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.145 0.855 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.111 0.889 41 H 0.046 0.954 42 H 0.065 0.935 43 H 0.122 0.878 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.345 13.301 1.974 22.746 hybrid contribution 0.134 -0.659 0.809 1.052 sum -18.211 12.642 2.783 22.343 Atomic orbital electron populations 1.20330 0.86668 1.03840 1.03259 1.21180 0.95117 0.86949 1.08555 1.43354 1.03240 1.09346 1.53987 0.71344 1.73364 1.00759 1.14848 1.20488 1.21972 0.95042 0.89450 1.09249 1.16972 0.81400 0.86269 0.77140 1.90791 1.86035 1.12890 1.50402 1.48089 1.05839 1.09400 1.69631 1.22161 1.03357 0.80456 0.97262 1.21604 0.94614 1.00976 0.98985 1.22430 0.89756 0.96446 0.89604 0.93070 1.87740 1.22836 1.77537 1.42749 1.23321 0.83147 0.97461 0.99953 1.21406 0.95540 0.89186 0.92015 1.44018 1.05967 1.50398 1.30814 1.19128 1.21680 1.06632 0.91226 0.91092 1.25077 1.01511 0.96476 0.96171 1.70033 1.33554 1.31698 1.19144 0.86280 0.78377 0.79849 0.82317 1.21252 1.21554 1.20321 1.21267 0.88334 0.91536 0.95854 0.94583 1.21775 0.81740 0.98051 0.98149 1.20121 0.90609 0.96725 1.07913 1.20180 1.01276 0.89715 1.02423 0.90370 0.89551 0.91195 0.85482 0.91863 0.90430 0.91311 0.90135 0.94150 0.88928 0.95381 0.93548 0.87837 0.90877 0.91384 0.92123 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.14 36.01 0.37 -0.03 16 2 C 0.01 0.07 7.23 -82.21 -0.59 -0.53 16 3 N -0.39 -3.31 6.83 33.50 0.23 -3.09 16 4 H 0.44 1.99 8.96 -190.44 -1.71 0.28 16 5 N -0.26 -3.17 8.66 33.42 0.29 -2.88 16 6 C 0.00 0.05 6.84 -82.76 -0.57 -0.52 16 7 C 0.60 10.84 7.69 -12.39 -0.10 10.74 16 8 O -0.53 -11.04 14.61 5.29 0.08 -10.97 16 9 N -0.60 -10.61 2.98 -174.70 -0.52 -11.13 16 10 C 0.09 1.34 6.06 -4.38 -0.03 1.31 16 11 C -0.12 -1.92 5.72 -27.37 -0.16 -2.08 16 12 C 0.08 1.49 2.50 -26.63 -0.07 1.43 16 13 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 14 O -0.39 -8.02 10.49 -35.23 -0.37 -8.39 16 15 C 0.04 0.79 6.96 37.26 0.26 1.05 16 16 C 0.14 3.52 5.42 -3.47 -0.02 3.51 16 17 N -0.59 -15.03 3.04 -164.35 -0.50 -15.53 16 18 C -0.26 -7.04 8.89 -15.06 -0.13 -7.17 16 19 H 0.07 1.89 6.35 -52.49 -0.33 1.56 16 20 C 0.01 0.19 4.96 -17.43 -0.09 0.10 16 21 N -0.90 -26.25 11.25 55.49 0.62 -25.63 16 22 Si 0.90 21.84 29.58 -169.99 -5.03 16.81 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 C 0.14 3.08 3.00 -67.53 -0.20 2.88 16 27 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 28 C 0.12 2.58 4.53 -3.71 -0.02 2.56 16 29 C -0.14 -1.79 6.24 -104.40 -0.65 -2.45 16 30 C -0.08 -0.90 9.56 36.01 0.34 -0.55 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.39 7.99 -51.93 -0.41 -0.03 16 33 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.13 1.70 4.10 -80.10 -0.33 1.38 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 38 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 2.44 6.30 -51.93 -0.33 2.11 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.10 2.42 6.82 -51.93 -0.35 2.07 16 44 H 0.07 1.50 7.42 -51.93 -0.39 1.12 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.52 8.00 -51.93 -0.42 0.10 16 47 H 0.08 1.18 6.86 -51.93 -0.36 0.82 16 LS Contribution 365.15 15.07 5.50 5.50 Total: -1.00 -33.90 365.15 -9.75 -43.65 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -8.41 Total: 1.37 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: -1.65 Total: 10.27 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: 0.12 Total: -58.24 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.29 Total: -19.36 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.90 -9.75 -43.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074196994.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.374 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds