Wall clock time and date at job start Tue Mar 31 2020 17:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.33321 * 126.10732 * 2 1 4 4 C 1.30859 * 109.68571 * 180.27467 * 3 2 1 5 5 N 1.34491 * 109.16401 * 359.76620 * 4 3 2 6 6 C 1.46497 * 126.47589 * 180.02562 * 5 4 3 7 7 C 1.36658 * 126.11039 * 179.88112 * 2 1 3 8 8 C 1.46771 * 126.83981 * 0.02562 * 7 2 1 9 9 O 1.21678 * 119.99737 * 274.00170 * 8 7 2 10 10 N 1.34771 * 120.00138 * 94.01101 * 8 7 2 11 11 C 1.46986 * 120.72102 * 355.09901 * 10 8 7 12 12 C 1.53159 * 108.43778 * 234.53094 * 11 10 8 13 13 C 1.52513 * 109.79642 * 305.46439 * 12 11 10 14 14 H 1.08998 * 108.93823 * 179.01606 * 13 12 11 15 15 O 1.42700 * 110.61539 * 298.71582 * 13 12 11 16 16 C 1.43072 * 113.87392 * 185.34358 * 15 13 12 17 17 C 1.53236 * 109.44520 * 298.35018 * 16 15 13 18 18 N 1.47166 * 108.69394 * 51.58711 * 17 16 15 19 19 C 1.36944 * 121.22455 * 129.02617 * 18 17 16 20 20 H 1.08000 * 120.00264 * 208.13543 * 19 18 17 21 21 C 1.38811 * 119.99628 * 28.14104 * 19 18 17 22 22 N 1.31622 * 120.00094 * 10.81400 * 21 19 18 23 23 Si 1.86801 * 119.99971 * 190.81772 * 21 19 18 24 24 H 1.48496 * 109.47387 * 59.99530 * 23 21 19 25 25 H 1.48499 * 109.47270 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46733 * 299.99801 * 23 21 19 27 27 C 1.47596 * 117.55361 * 309.05130 * 18 17 16 28 28 H 1.08999 * 111.16760 * 172.80509 * 27 18 17 29 29 C 1.46789 * 120.72254 * 175.07973 * 10 8 7 30 30 H 1.09002 * 109.47136 * 270.11875 * 1 2 3 31 31 H 1.09002 * 109.47611 * 30.12304 * 1 2 3 32 32 H 1.09000 * 109.47250 * 150.12229 * 1 2 3 33 33 H 1.07999 * 125.41475 * 179.74950 * 4 3 2 34 34 H 1.08999 * 109.47448 * 274.83156 * 6 5 4 35 35 H 1.09003 * 109.47061 * 34.82543 * 6 5 4 36 36 H 1.08996 * 109.47427 * 154.82384 * 6 5 4 37 37 H 1.08997 * 109.64229 * 114.84900 * 11 10 8 38 38 H 1.09000 * 109.82001 * 354.31540 * 11 10 8 39 39 H 1.09000 * 109.41587 * 185.36833 * 12 11 10 40 40 H 1.08996 * 109.36707 * 65.52894 * 12 11 10 41 41 H 1.09005 * 109.47278 * 58.33717 * 16 15 13 42 42 H 1.09001 * 109.47935 * 178.35293 * 16 15 13 43 43 H 1.08999 * 109.59542 * 291.82513 * 17 16 15 44 44 H 1.08997 * 109.60210 * 171.35343 * 17 16 15 45 45 H 0.97002 * 120.00189 * 180.02562 * 22 21 19 46 46 H 1.09001 * 109.52188 * 245.63980 * 29 10 8 47 47 H 1.08996 * 109.51998 * 5.81612 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7072 -0.0059 5 7 3.6122 -0.6362 -0.0048 6 6 4.8305 -1.4497 -0.0095 7 6 2.3123 -1.1040 0.0023 8 6 1.8820 -2.5072 0.0047 9 8 1.6329 -3.0654 1.0568 10 7 1.7629 -3.1775 -1.1584 11 6 1.9555 -2.4911 -2.4438 12 6 0.7132 -2.7246 -3.3086 13 6 0.4431 -4.2205 -3.4316 14 1 -0.4527 -4.3699 -4.0343 15 8 1.5406 -4.8791 -4.0625 16 6 1.3110 -6.2670 -4.3229 17 6 1.0830 -7.0036 -2.9987 18 7 0.0422 -6.2942 -2.2375 19 6 -1.0381 -6.9595 -1.7221 20 1 -1.9749 -6.4409 -1.5814 21 6 -0.9289 -8.3004 -1.3802 22 7 0.2538 -8.8772 -1.3479 23 14 -2.4605 -9.2864 -0.9660 24 1 -3.3793 -9.2872 -2.1326 25 1 -2.0766 -10.6829 -0.6379 26 1 -3.1433 -8.6729 0.2014 27 6 0.2053 -4.8392 -2.0506 28 1 -0.6782 -4.4006 -1.5868 29 6 1.4383 -4.6091 -1.1691 30 1 -0.3633 0.0021 1.0277 31 1 -0.3634 0.8889 -0.5157 32 1 -0.3634 -0.8911 -0.5119 33 1 4.3969 1.3745 -0.0112 34 1 5.1760 -1.5806 -1.0349 35 1 5.6038 -0.9493 0.5733 36 1 4.6182 -2.4244 0.4297 37 1 2.8336 -2.8957 -2.9472 38 1 2.0894 -1.4225 -2.2757 39 1 0.8778 -2.3034 -4.3004 40 1 -0.1456 -2.2382 -2.8463 41 1 0.4307 -6.3771 -4.9563 42 1 2.1785 -6.6902 -4.8295 43 1 2.0094 -7.0190 -2.4247 44 1 0.7575 -8.0243 -3.1994 45 1 0.3300 -9.8143 -1.1094 46 1 2.2822 -5.1709 -1.5695 47 1 1.2271 -4.9422 -0.1531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074271716.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:57 Heat of formation + Delta-G solvation = 20.621587 kcal Electronic energy + Delta-G solvation = -30902.791027 eV Core-core repulsion = 26894.950174 eV Total energy + Delta-G solvation = -4007.840853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -42.32191 -39.95614 -38.43063 -35.78854 -34.68235 -34.58071 -32.03434 -31.57278 -31.16403 -29.57162 -28.55129 -27.41112 -26.24208 -25.01845 -23.94133 -22.96285 -22.23496 -21.37081 -20.65691 -19.28169 -18.35160 -17.52522 -16.95608 -16.57798 -15.78001 -15.55671 -15.49060 -15.34983 -15.10771 -14.63108 -14.48082 -13.99272 -13.81544 -13.64984 -13.47701 -13.21932 -13.08032 -12.80395 -12.68750 -12.42908 -12.38846 -12.36767 -12.18378 -12.04386 -11.37890 -11.09119 -10.98563 -10.82467 -10.63794 -10.39953 -10.28987 -10.22842 -10.06079 -9.77714 -9.69831 -9.64816 -9.02855 -8.65591 -8.41612 -8.34462 -6.77837 -5.88733 -3.37071 1.65115 2.19801 2.85412 2.90897 3.28325 3.34495 3.39039 3.40236 4.27614 4.37384 4.38344 4.45688 4.53190 4.85822 4.93753 4.96544 5.11218 5.13323 5.22025 5.27318 5.30938 5.42362 5.58902 5.70136 5.71710 5.75171 5.80712 5.89980 5.94529 6.00836 6.02923 6.08280 6.13069 6.25912 6.30844 6.39052 6.50561 6.57225 6.67758 6.85811 6.96302 7.06508 7.47330 7.57777 7.66684 7.85362 7.87571 8.24595 8.30295 9.06085 9.65926 10.23397 11.18052 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016824 B = 0.003667 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.852337 B = 7633.239727 C = 8088.798395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.052 3.948 3 N -0.492 5.492 4 C 0.193 3.807 5 N -0.440 5.440 6 C 0.069 3.931 7 C -0.063 4.063 8 C 0.588 3.412 9 O -0.525 6.525 10 N -0.592 5.592 11 C 0.116 3.884 12 C -0.121 4.121 13 C 0.080 3.920 14 H 0.053 0.947 15 O -0.388 6.388 16 C 0.038 3.962 17 C 0.137 3.863 18 N -0.584 5.584 19 C -0.255 4.255 20 H 0.069 0.931 21 C 0.007 3.993 22 N -0.904 5.904 23 Si 0.909 3.091 24 H -0.283 1.283 25 H -0.289 1.289 26 H -0.281 1.281 27 C 0.135 3.865 28 H 0.076 0.924 29 C 0.105 3.895 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.209 0.791 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.041 0.959 42 H 0.080 0.920 43 H 0.027 0.973 44 H 0.101 0.899 45 H 0.256 0.744 46 H 0.071 0.929 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.276 15.517 -3.650 17.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.081 4.081 3 N -0.211 5.211 4 C -0.089 4.089 5 N -0.123 5.123 6 C -0.073 4.073 7 C -0.180 4.180 8 C 0.373 3.627 9 O -0.401 6.401 10 N -0.325 5.325 11 C -0.007 4.007 12 C -0.160 4.160 13 C 0.021 3.979 14 H 0.071 0.929 15 O -0.308 6.308 16 C -0.040 4.040 17 C 0.012 3.988 18 N -0.306 5.306 19 C -0.385 4.385 20 H 0.086 0.914 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.738 3.262 24 H -0.209 1.209 25 H -0.215 1.215 26 H -0.207 1.207 27 C 0.026 3.974 28 H 0.094 0.906 29 C -0.018 4.018 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.226 0.774 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.059 0.941 42 H 0.098 0.902 43 H 0.045 0.955 44 H 0.119 0.881 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.203 15.742 -3.076 18.015 hybrid contribution -0.365 -1.575 0.300 1.645 sum 7.838 14.166 -2.776 16.426 Atomic orbital electron populations 1.20125 0.87091 1.02901 1.02914 1.20817 0.96393 0.86753 1.04103 1.69991 1.00338 1.30158 1.20568 1.24920 0.97179 0.81623 1.05141 1.45282 1.05924 1.07715 1.53371 1.22156 0.84562 0.96565 1.04058 1.20810 0.84670 0.95352 1.17162 1.16989 0.78421 0.83244 0.84073 1.90859 1.50095 1.68026 1.31075 1.48304 1.68012 1.11135 1.05077 1.21595 0.98693 0.96783 0.83625 1.21784 0.98472 0.95406 1.00294 1.22229 0.89649 0.90938 0.95117 0.92874 1.87710 1.40000 1.23184 1.79873 1.23364 0.99838 0.81370 0.99393 1.21521 0.91535 0.97454 0.88282 1.44249 1.24842 1.01115 1.60390 1.19150 0.88960 0.93288 1.37068 0.91370 1.25127 0.96621 0.98504 0.98923 1.69943 1.21352 1.12050 1.51431 0.86275 0.82305 0.79105 0.78510 1.20911 1.21508 1.20691 1.21597 0.95832 0.87449 0.92520 0.90590 1.22435 0.99424 0.77011 1.02945 0.90798 0.90621 0.91166 0.77425 0.89847 0.88984 0.89380 0.90817 0.90507 0.90335 0.90289 0.94094 0.90184 0.95470 0.88135 0.93341 0.91058 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.24 36.00 0.37 -0.53 16 2 C 0.05 0.74 7.04 -82.52 -0.58 0.16 16 3 N -0.49 -6.62 11.20 -10.65 -0.12 -6.74 16 4 C 0.19 2.01 12.52 -90.58 -1.13 0.88 16 5 N -0.44 -4.96 3.17 -121.98 -0.39 -5.35 16 6 C 0.07 0.54 11.07 59.85 0.66 1.21 16 7 C -0.06 -0.92 4.68 -82.14 -0.38 -1.30 16 8 C 0.59 10.11 6.62 -12.81 -0.08 10.03 16 9 O -0.53 -11.19 16.53 5.21 0.09 -11.10 16 10 N -0.59 -9.65 2.96 -174.29 -0.52 -10.16 16 11 C 0.12 1.55 6.15 -3.70 -0.02 1.53 16 12 C -0.12 -1.61 5.82 -26.90 -0.16 -1.77 16 13 C 0.08 1.37 2.72 -26.89 -0.07 1.30 16 14 H 0.05 0.95 8.12 -51.93 -0.42 0.52 16 15 O -0.39 -6.96 9.59 -35.23 -0.34 -7.30 16 16 C 0.04 0.71 6.97 37.28 0.26 0.97 16 17 C 0.14 3.11 4.90 -3.56 -0.02 3.09 16 18 N -0.58 -13.91 2.71 -163.88 -0.44 -14.36 16 19 C -0.26 -6.75 9.73 -15.06 -0.15 -6.90 16 20 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 21 C 0.01 0.19 5.09 -17.43 -0.09 0.11 16 22 N -0.90 -25.17 10.91 55.49 0.61 -24.57 16 23 Si 0.91 21.25 29.57 -169.99 -5.03 16.22 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 C 0.13 2.72 3.00 -67.08 -0.20 2.52 16 28 H 0.08 1.58 8.03 -51.93 -0.42 1.16 16 29 C 0.10 2.07 5.63 -3.72 -0.02 2.05 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.88 7.94 -51.93 -0.41 0.47 16 33 H 0.21 1.21 8.06 -52.49 -0.42 0.78 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.86 7.80 -51.93 -0.40 0.46 16 37 H 0.07 0.99 7.94 -51.93 -0.41 0.58 16 38 H 0.08 0.95 6.32 -51.93 -0.33 0.62 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.03 0.65 7.17 -51.93 -0.37 0.28 16 44 H 0.10 2.53 6.07 -51.93 -0.32 2.22 16 45 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 46 H 0.07 1.48 6.56 -51.93 -0.34 1.14 16 47 H 0.09 2.09 6.99 -51.93 -0.36 1.72 16 LS Contribution 372.42 15.07 5.61 5.61 Total: -1.00 -32.64 372.42 -9.29 -41.93 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.14 Total: 2.51 kcal Atomic # 6 Polarization: 14.93 SS G_CDS: -1.62 Total: 13.31 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: -0.86 Total: -61.19 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.25 Total: -18.40 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.64 -9.29 -41.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074271716.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.549 kcal (2) G-P(sol) polarization free energy of solvation -32.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds