Wall clock time and date at job start Tue Mar 31 2020 17:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.33321 * 126.10732 * 2 1 4 4 C 1.30859 * 109.68571 * 180.27467 * 3 2 1 5 5 N 1.34491 * 109.16401 * 359.76620 * 4 3 2 6 6 C 1.46497 * 126.47589 * 180.02562 * 5 4 3 7 7 C 1.36658 * 126.11039 * 179.88112 * 2 1 3 8 8 C 1.46771 * 126.83981 * 0.02562 * 7 2 1 9 9 O 1.21678 * 119.99737 * 274.00170 * 8 7 2 10 10 N 1.34771 * 120.00138 * 94.01101 * 8 7 2 11 11 C 1.46986 * 120.72102 * 355.09901 * 10 8 7 12 12 C 1.53159 * 108.43778 * 234.53094 * 11 10 8 13 13 C 1.52513 * 109.79642 * 305.46439 * 12 11 10 14 14 H 1.08998 * 108.93823 * 179.01606 * 13 12 11 15 15 O 1.42700 * 110.61539 * 298.71582 * 13 12 11 16 16 C 1.43072 * 113.87392 * 185.34358 * 15 13 12 17 17 C 1.53236 * 109.44520 * 298.35018 * 16 15 13 18 18 N 1.47166 * 108.69394 * 51.58711 * 17 16 15 19 19 C 1.36944 * 121.22455 * 129.02617 * 18 17 16 20 20 H 1.08000 * 120.00264 * 208.13543 * 19 18 17 21 21 C 1.38811 * 119.99628 * 28.14104 * 19 18 17 22 22 N 1.31622 * 120.00094 * 10.81400 * 21 19 18 23 23 Si 1.86801 * 119.99971 * 190.81772 * 21 19 18 24 24 H 1.48496 * 109.47387 * 59.99530 * 23 21 19 25 25 H 1.48499 * 109.47270 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46733 * 299.99801 * 23 21 19 27 27 C 1.47596 * 117.55361 * 309.05130 * 18 17 16 28 28 H 1.08999 * 111.16760 * 172.80509 * 27 18 17 29 29 C 1.46789 * 120.72254 * 175.07973 * 10 8 7 30 30 H 1.09002 * 109.47136 * 270.11875 * 1 2 3 31 31 H 1.09002 * 109.47611 * 30.12304 * 1 2 3 32 32 H 1.09000 * 109.47250 * 150.12229 * 1 2 3 33 33 H 1.07999 * 125.41475 * 179.74950 * 4 3 2 34 34 H 1.08999 * 109.47448 * 274.83156 * 6 5 4 35 35 H 1.09003 * 109.47061 * 34.82543 * 6 5 4 36 36 H 1.08996 * 109.47427 * 154.82384 * 6 5 4 37 37 H 1.08997 * 109.64229 * 114.84900 * 11 10 8 38 38 H 1.09000 * 109.82001 * 354.31540 * 11 10 8 39 39 H 1.09000 * 109.41587 * 185.36833 * 12 11 10 40 40 H 1.08996 * 109.36707 * 65.52894 * 12 11 10 41 41 H 1.09005 * 109.47278 * 58.33717 * 16 15 13 42 42 H 1.09001 * 109.47935 * 178.35293 * 16 15 13 43 43 H 1.08999 * 109.59542 * 291.82513 * 17 16 15 44 44 H 1.08997 * 109.60210 * 171.35343 * 17 16 15 45 45 H 0.97002 * 120.00189 * 180.02562 * 22 21 19 46 46 H 1.09001 * 109.52188 * 245.63980 * 29 10 8 47 47 H 1.08996 * 109.51998 * 5.81612 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7072 -0.0059 5 7 3.6122 -0.6362 -0.0048 6 6 4.8305 -1.4497 -0.0095 7 6 2.3123 -1.1040 0.0023 8 6 1.8820 -2.5072 0.0047 9 8 1.6329 -3.0654 1.0568 10 7 1.7629 -3.1775 -1.1584 11 6 1.9555 -2.4911 -2.4438 12 6 0.7132 -2.7246 -3.3086 13 6 0.4431 -4.2205 -3.4316 14 1 -0.4527 -4.3699 -4.0343 15 8 1.5406 -4.8791 -4.0625 16 6 1.3110 -6.2670 -4.3229 17 6 1.0830 -7.0036 -2.9987 18 7 0.0422 -6.2942 -2.2375 19 6 -1.0381 -6.9595 -1.7221 20 1 -1.9749 -6.4409 -1.5814 21 6 -0.9289 -8.3004 -1.3802 22 7 0.2538 -8.8772 -1.3479 23 14 -2.4605 -9.2864 -0.9660 24 1 -3.3793 -9.2872 -2.1326 25 1 -2.0766 -10.6829 -0.6379 26 1 -3.1433 -8.6729 0.2014 27 6 0.2053 -4.8392 -2.0506 28 1 -0.6782 -4.4006 -1.5868 29 6 1.4383 -4.6091 -1.1691 30 1 -0.3633 0.0021 1.0277 31 1 -0.3634 0.8889 -0.5157 32 1 -0.3634 -0.8911 -0.5119 33 1 4.3969 1.3745 -0.0112 34 1 5.1760 -1.5806 -1.0349 35 1 5.6038 -0.9493 0.5733 36 1 4.6182 -2.4244 0.4297 37 1 2.8336 -2.8957 -2.9472 38 1 2.0894 -1.4225 -2.2757 39 1 0.8778 -2.3034 -4.3004 40 1 -0.1456 -2.2382 -2.8463 41 1 0.4307 -6.3771 -4.9563 42 1 2.1785 -6.6902 -4.8295 43 1 2.0094 -7.0190 -2.4247 44 1 0.7575 -8.0243 -3.1994 45 1 0.3300 -9.8143 -1.1094 46 1 2.2822 -5.1709 -1.5695 47 1 1.2271 -4.9422 -0.1531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074271716.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:55 Heat of formation + Delta-G solvation = -0.107316 kcal Electronic energy + Delta-G solvation = -30903.689900 eV Core-core repulsion = 26894.950174 eV Total energy + Delta-G solvation = -4008.739726 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.27807 -41.39202 -39.91723 -37.23845 -36.45783 -35.43011 -33.62153 -33.16240 -32.30591 -31.07440 -29.67496 -28.99284 -27.18784 -26.30927 -25.66388 -24.52527 -23.45547 -22.82701 -21.60155 -20.65126 -19.72585 -18.95470 -18.58657 -17.74409 -17.12766 -17.02391 -16.75537 -16.65298 -16.48419 -16.16789 -15.81407 -15.48737 -15.19986 -14.87024 -14.77872 -14.47369 -14.34212 -14.00011 -13.94409 -13.86438 -13.56362 -13.45758 -13.24379 -13.09992 -13.02761 -12.87950 -12.66071 -12.47783 -12.28941 -12.15437 -11.88772 -11.80769 -11.51597 -11.25533 -10.95125 -10.75045 -10.58570 -10.54579 -9.84392 -9.41675 -8.70020 -7.92407 -5.43841 0.67635 1.07352 1.44545 1.45949 1.52490 1.66175 1.98445 2.12965 2.45341 2.86791 3.23140 3.32096 3.43081 3.62193 3.79372 3.83430 3.93226 4.09288 4.09863 4.14987 4.23607 4.28021 4.33764 4.40645 4.45108 4.54631 4.59034 4.60625 4.73056 4.74869 4.80674 4.84762 4.86176 4.94283 4.96065 5.00696 5.14533 5.20871 5.27425 5.36083 5.52100 5.55895 5.61818 6.16044 6.24912 6.26118 6.35420 6.89081 6.95905 7.05057 7.69840 8.24123 9.11314 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016824 B = 0.003667 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.852337 B = 7633.239727 C = 8088.798395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.048 3.952 3 N -0.520 5.520 4 C 0.219 3.781 5 N -0.439 5.439 6 C 0.064 3.936 7 C -0.092 4.092 8 C 0.594 3.406 9 O -0.579 6.579 10 N -0.587 5.587 11 C 0.120 3.880 12 C -0.114 4.114 13 C 0.087 3.913 14 H 0.052 0.948 15 O -0.382 6.382 16 C 0.051 3.949 17 C 0.144 3.856 18 N -0.601 5.601 19 C -0.267 4.267 20 H 0.066 0.934 21 C -0.042 4.042 22 N -0.932 5.932 23 Si 0.969 3.031 24 H -0.273 1.273 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.132 3.868 28 H 0.064 0.936 29 C 0.125 3.875 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.259 0.741 34 H 0.104 0.896 35 H 0.128 0.872 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.089 0.911 41 H 0.045 0.955 42 H 0.109 0.891 43 H 0.003 0.997 44 H 0.072 0.928 45 H 0.252 0.748 46 H 0.059 0.941 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.387 18.426 -5.412 21.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.084 4.084 3 N -0.240 5.240 4 C -0.063 4.063 5 N -0.121 5.121 6 C -0.077 4.077 7 C -0.209 4.209 8 C 0.381 3.619 9 O -0.458 6.458 10 N -0.318 5.318 11 C -0.002 4.002 12 C -0.152 4.152 13 C 0.028 3.972 14 H 0.070 0.930 15 O -0.301 6.301 16 C -0.027 4.027 17 C 0.019 3.981 18 N -0.324 5.324 19 C -0.397 4.397 20 H 0.084 0.916 21 C -0.238 4.238 22 N -0.577 5.577 23 Si 0.797 3.203 24 H -0.199 1.199 25 H -0.218 1.218 26 H -0.207 1.207 27 C 0.024 3.976 28 H 0.082 0.918 29 C 0.000 4.000 30 H 0.087 0.913 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.274 0.726 34 H 0.122 0.878 35 H 0.147 0.853 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.115 0.885 39 H 0.130 0.870 40 H 0.108 0.892 41 H 0.063 0.937 42 H 0.127 0.873 43 H 0.021 0.979 44 H 0.090 0.910 45 H 0.061 0.939 46 H 0.077 0.923 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.332 18.688 -4.883 21.452 hybrid contribution -0.640 -2.393 0.898 2.635 sum 8.692 16.295 -3.985 18.894 Atomic orbital electron populations 1.20157 0.86749 1.03414 1.02809 1.21047 0.97014 0.86921 1.03465 1.70029 1.01613 1.29980 1.22345 1.25899 0.97607 0.81508 1.01293 1.45481 1.05516 1.08367 1.52777 1.22416 0.83984 0.95412 1.05871 1.20332 0.86651 0.93410 1.20503 1.17347 0.77142 0.84238 0.83195 1.90825 1.52369 1.69620 1.32976 1.48260 1.67394 1.09674 1.06508 1.21776 0.99043 0.97562 0.81796 1.21822 0.98831 0.92343 1.02211 1.22227 0.89682 0.92988 0.92349 0.92967 1.87727 1.40285 1.22551 1.79546 1.23196 1.01365 0.81349 0.96756 1.21348 0.89912 0.96788 0.90034 1.44455 1.24533 1.02566 1.60884 1.19437 0.89859 0.93814 1.36614 0.91607 1.25828 0.99130 0.99458 0.99400 1.70106 1.23033 1.11860 1.52683 0.85320 0.79294 0.77345 0.78332 1.19865 1.21782 1.20709 1.21730 0.95339 0.85722 0.94837 0.91789 1.21863 0.98761 0.79250 1.00077 0.91261 0.88880 0.91786 0.72580 0.87791 0.85331 0.92102 0.90121 0.88487 0.87000 0.89212 0.93667 0.87309 0.97930 0.90993 0.93879 0.92312 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.77 10.24 71.23 0.73 -1.05 16 2 C 0.05 1.30 7.04 41.96 0.30 1.60 16 3 N -0.52 -12.54 11.20 -187.60 -2.10 -14.65 16 4 C 0.22 3.68 12.52 180.33 2.26 5.93 16 5 N -0.44 -8.73 3.17 -539.82 -1.71 -10.44 16 6 C 0.06 0.84 11.07 127.77 1.41 2.25 16 7 C -0.09 -2.58 4.68 40.01 0.19 -2.39 16 8 C 0.59 20.88 6.62 86.47 0.57 21.45 16 9 O -0.58 -26.14 16.53 -4.28 -0.07 -26.22 16 10 N -0.59 -19.24 2.96 -823.57 -2.44 -21.68 16 11 C 0.12 2.92 6.15 86.34 0.53 3.45 16 12 C -0.11 -2.70 5.82 30.49 0.18 -2.53 16 13 C 0.09 2.85 2.72 30.49 0.08 2.93 16 14 H 0.05 1.76 8.12 -2.39 -0.02 1.74 16 15 O -0.38 -12.97 9.59 -148.98 -1.43 -14.39 16 16 C 0.05 1.84 6.97 72.06 0.50 2.34 16 17 C 0.14 6.75 4.90 86.33 0.42 7.17 16 18 N -0.60 -29.72 2.71 -672.38 -1.82 -31.54 16 19 C -0.27 -14.64 9.73 84.03 0.82 -13.82 16 20 H 0.07 3.55 7.85 -2.91 -0.02 3.52 16 21 C -0.04 -2.33 5.09 84.86 0.43 -1.90 16 22 N -0.93 -54.09 10.91 21.65 0.24 -53.86 16 23 Si 0.97 44.81 29.57 68.60 2.03 46.84 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 26 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 27 C 0.13 5.45 3.00 44.95 0.13 5.58 16 28 H 0.06 2.76 8.03 -2.39 -0.02 2.75 16 29 C 0.13 5.18 5.63 86.43 0.49 5.67 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.06 1.58 7.94 -2.39 -0.02 1.56 16 33 H 0.26 1.44 8.06 -2.91 -0.02 1.42 16 34 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.06 1.16 7.80 -2.39 -0.02 1.14 16 37 H 0.08 1.92 7.94 -2.39 -0.02 1.90 16 38 H 0.10 2.08 6.32 -2.39 -0.02 2.06 16 39 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 42 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 43 H 0.00 0.13 7.17 -2.39 -0.02 0.12 16 44 H 0.07 3.78 6.07 -2.39 -0.01 3.76 16 45 H 0.25 14.25 8.31 -92.71 -0.77 13.47 16 46 H 0.06 2.56 6.56 -2.39 -0.02 2.55 16 47 H 0.05 2.33 6.99 -2.39 -0.02 2.32 16 Total: -1.00 -75.91 372.42 2.71 -73.20 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.97 Total: 16.02 kcal Atomic # 6 Polarization: 27.66 SS G_CDS: 9.04 Total: 36.70 kcal Atomic # 7 Polarization: -124.32 SS G_CDS: -7.84 Total: -132.16 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -1.50 Total: -40.61 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -75.91 2.71 -73.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074271716.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.095 kcal (2) G-P(sol) polarization free energy of solvation -75.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds