Wall clock time and date at job start Tue Mar 31 2020 17:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33314 * 126.10671 * 2 1 4 4 C 1.30855 * 109.68575 * 179.97438 * 3 2 1 5 5 N 1.34494 * 109.16448 * 359.76743 * 4 3 2 6 6 C 1.46497 * 126.47765 * 180.24754 * 5 4 3 7 7 C 1.36659 * 126.10301 * 180.02562 * 2 1 3 8 8 C 1.46762 * 126.85270 * 359.96646 * 7 2 1 9 9 O 1.21683 * 119.99497 * 278.83194 * 8 7 2 10 10 N 1.34780 * 120.00386 * 98.82193 * 8 7 2 11 11 C 1.46836 * 120.40681 * 5.91662 * 10 8 7 12 12 C 1.53366 * 109.24689 * 232.22785 * 11 10 8 13 13 C 1.52790 * 108.81562 * 306.16495 * 12 11 10 14 14 H 1.08994 * 108.95888 * 303.06610 * 13 12 11 15 15 O 1.42601 * 111.11138 * 182.53284 * 13 12 11 16 16 C 1.43145 * 113.63298 * 176.38840 * 15 13 12 17 17 C 1.53196 * 109.69647 * 61.71222 * 16 15 13 18 18 N 1.47332 * 108.81050 * 308.71029 * 17 16 15 19 19 C 1.36943 * 121.34242 * 230.30971 * 18 17 16 20 20 H 1.07997 * 119.99640 * 149.66366 * 19 18 17 21 21 C 1.38811 * 120.00228 * 329.65523 * 19 18 17 22 22 N 1.31625 * 119.99629 * 348.26260 * 21 19 18 23 23 Si 1.86793 * 120.00134 * 168.25957 * 21 19 18 24 24 H 1.48505 * 109.47073 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47310 * 120.00121 * 23 21 19 26 26 H 1.48499 * 109.46959 * 240.00364 * 23 21 19 27 27 C 1.46871 * 117.34821 * 50.32811 * 18 17 16 28 28 H 1.08993 * 109.65205 * 67.61574 * 27 18 17 29 29 C 1.47121 * 120.41157 * 185.88915 * 10 8 7 30 30 H 1.08998 * 109.47140 * 269.99274 * 1 2 3 31 31 H 1.09002 * 109.47302 * 29.99684 * 1 2 3 32 32 H 1.09003 * 109.47424 * 149.99898 * 1 2 3 33 33 H 1.08002 * 125.41610 * 179.97438 * 4 3 2 34 34 H 1.08994 * 109.47170 * 274.68339 * 6 5 4 35 35 H 1.09007 * 109.46850 * 34.67836 * 6 5 4 36 36 H 1.09000 * 109.47057 * 154.67530 * 6 5 4 37 37 H 1.08998 * 109.51231 * 352.15596 * 11 10 8 38 38 H 1.08997 * 109.50992 * 112.29556 * 11 10 8 39 39 H 1.09006 * 109.58333 * 186.36583 * 12 11 10 40 40 H 1.08998 * 109.58289 * 65.96427 * 12 11 10 41 41 H 1.09008 * 109.42630 * 181.76592 * 16 15 13 42 42 H 1.08994 * 109.42772 * 301.65188 * 16 15 13 43 43 H 1.08999 * 109.58057 * 68.55720 * 17 16 15 44 44 H 1.08998 * 109.57900 * 188.96759 * 17 16 15 45 45 H 0.96997 * 119.99525 * 180.02562 * 22 21 19 46 46 H 1.09010 * 109.72932 * 7.13449 * 29 10 8 47 47 H 1.08998 * 109.76939 * 246.47993 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5478 0.7072 0.0006 5 7 3.6122 -0.6362 0.0061 6 6 4.8305 -1.4498 0.0136 7 6 2.3123 -1.1041 -0.0005 8 6 1.8821 -2.5073 -0.0004 9 8 1.5496 -3.0416 1.0410 10 7 1.8552 -3.2040 -1.1539 11 6 2.3755 -2.6113 -2.3925 12 6 1.3125 -2.7242 -3.4923 13 6 0.8789 -4.1845 -3.6106 14 1 1.7561 -4.7991 -3.8122 15 8 -0.0692 -4.3551 -4.6620 16 6 -0.4514 -5.7182 -4.8743 17 6 -1.1217 -6.2692 -3.6118 18 7 -0.2501 -5.9996 -2.4550 19 6 0.0874 -6.9899 -1.5713 20 1 1.0378 -6.9560 -1.0595 21 6 -0.7921 -8.0371 -1.3333 22 7 -2.0322 -7.9670 -1.7691 23 14 -0.2159 -9.5458 -0.3946 24 1 1.2104 -9.3785 -0.0164 25 1 -1.0369 -9.7091 0.8319 26 1 -0.3631 -10.7487 -1.2528 27 6 0.2422 -4.6262 -2.2867 28 1 -0.5896 -3.9660 -2.0415 29 6 1.3047 -4.5680 -1.1874 30 1 -0.3633 -0.0001 1.0276 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5139 33 1 4.3970 1.3745 0.0003 34 1 5.1829 -1.5858 -1.0088 35 1 5.5999 -0.9463 0.5991 36 1 4.6152 -2.4223 0.4563 37 1 2.6126 -1.5612 -2.2219 38 1 3.2757 -3.1432 -2.7004 39 1 1.7318 -2.3896 -4.4413 40 1 0.4520 -2.1074 -3.2333 41 1 -1.1502 -5.7729 -5.7092 42 1 0.4339 -6.3115 -5.1032 43 1 -2.0848 -5.7800 -3.4664 44 1 -1.2678 -7.3444 -3.7154 45 1 -2.6468 -8.6986 -1.6024 46 1 0.8515 -4.8056 -0.2249 47 1 2.0995 -5.2811 -1.4058 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074271717.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:02 Heat of formation + Delta-G solvation = 20.529769 kcal Electronic energy + Delta-G solvation = -30799.451484 eV Core-core repulsion = 26791.606649 eV Total energy + Delta-G solvation = -4007.844834 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.37877 -39.96166 -38.47285 -36.12890 -34.74977 -34.62324 -32.09106 -31.46700 -31.16303 -29.93515 -28.57592 -27.15458 -26.26064 -25.24765 -23.99989 -22.90825 -21.96265 -21.09602 -20.60954 -19.74191 -18.89402 -17.64406 -16.95703 -16.55334 -15.87212 -15.66396 -15.48453 -15.27751 -15.11622 -14.74415 -14.29558 -14.04108 -13.75510 -13.66241 -13.58310 -13.21421 -13.12517 -12.91404 -12.82626 -12.65641 -12.48075 -12.41226 -12.16028 -11.95325 -11.39781 -11.05095 -11.03397 -10.88829 -10.67815 -10.43801 -10.30251 -10.23624 -10.07869 -9.86528 -9.72092 -9.63745 -9.04163 -8.59244 -8.50063 -8.45691 -6.73660 -5.88159 -3.37657 1.58797 2.15372 2.72743 2.87510 3.17506 3.31788 3.40017 3.41297 4.18385 4.33502 4.38110 4.38915 4.45696 4.77216 4.81481 4.91340 5.05814 5.11478 5.20201 5.25251 5.31556 5.35384 5.45499 5.63438 5.68816 5.74769 5.77996 5.83431 5.87292 5.92633 6.02515 6.06895 6.08995 6.20109 6.28122 6.40800 6.47412 6.55312 6.61464 6.80895 6.91663 7.08194 7.41100 7.47816 7.67165 7.84420 7.85224 8.14507 8.30075 9.05961 9.68009 10.27251 11.19785 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014677 B = 0.003926 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.278939 B = 7130.450295 C = 7975.464842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.060 3.940 3 N -0.491 5.491 4 C 0.196 3.804 5 N -0.443 5.443 6 C 0.068 3.932 7 C -0.069 4.069 8 C 0.593 3.407 9 O -0.519 6.519 10 N -0.598 5.598 11 C 0.115 3.885 12 C -0.123 4.123 13 C 0.078 3.922 14 H 0.051 0.949 15 O -0.388 6.388 16 C 0.039 3.961 17 C 0.144 3.856 18 N -0.587 5.587 19 C -0.261 4.261 20 H 0.071 0.929 21 C 0.010 3.990 22 N -0.900 5.900 23 Si 0.904 3.096 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.288 1.288 27 C 0.137 3.863 28 H 0.039 0.961 29 C 0.125 3.875 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.210 0.790 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.040 0.960 43 H 0.029 0.971 44 H 0.094 0.906 45 H 0.255 0.745 46 H 0.104 0.896 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.110 13.726 -2.522 19.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.072 4.072 3 N -0.210 5.210 4 C -0.086 4.086 5 N -0.127 5.127 6 C -0.074 4.074 7 C -0.185 4.185 8 C 0.377 3.623 9 O -0.393 6.393 10 N -0.332 5.332 11 C -0.008 4.008 12 C -0.162 4.162 13 C 0.018 3.982 14 H 0.069 0.931 15 O -0.307 6.307 16 C -0.039 4.039 17 C 0.018 3.982 18 N -0.312 5.312 19 C -0.390 4.390 20 H 0.088 0.912 21 C -0.189 4.189 22 N -0.543 5.543 23 Si 0.734 3.266 24 H -0.201 1.201 25 H -0.214 1.214 26 H -0.215 1.215 27 C 0.029 3.971 28 H 0.056 0.944 29 C 0.004 3.996 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.226 0.774 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.059 0.941 43 H 0.047 0.953 44 H 0.112 0.888 45 H 0.065 0.935 46 H 0.122 0.878 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.594 14.105 -2.017 19.017 hybrid contribution 0.716 -1.854 0.522 2.055 sum 13.310 12.252 -1.495 18.152 Atomic orbital electron populations 1.20149 0.86962 1.03100 1.02985 1.20832 0.96456 0.86633 1.03309 1.70012 1.00338 1.30115 1.20551 1.24945 0.97201 0.81616 1.04850 1.45331 1.05868 1.07742 1.53735 1.22161 0.84664 0.96575 1.04011 1.20782 0.84659 0.95174 1.17852 1.16964 0.78436 0.83071 0.83785 1.90872 1.48139 1.69091 1.31218 1.48284 1.60376 1.16571 1.07952 1.21661 0.96421 0.98771 0.83960 1.21833 0.99178 0.96849 0.98347 1.22410 0.91518 0.94805 0.89496 0.93083 1.87747 1.62057 1.27483 1.53441 1.23348 0.98703 0.82060 0.99794 1.21419 0.91645 1.01535 0.83553 1.43990 1.57902 1.02494 1.26807 1.19134 0.99215 1.00959 1.19718 0.91185 1.25163 0.94644 1.00263 0.98854 1.69996 1.03391 1.31971 1.48947 0.86200 0.78260 0.82764 0.79423 1.20144 1.21449 1.21478 1.21303 0.94486 0.89404 0.91887 0.94353 1.21837 0.96524 0.79185 1.02086 0.90682 0.90570 0.91032 0.77372 0.89899 0.88915 0.89414 0.89917 0.91259 0.90249 0.90623 0.90034 0.94149 0.95275 0.88833 0.93454 0.87771 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.98 10.24 36.01 0.37 -0.61 16 2 C 0.06 0.86 7.15 -82.52 -0.59 0.27 16 3 N -0.49 -6.55 11.20 -10.65 -0.12 -6.67 16 4 C 0.20 1.94 12.52 -90.58 -1.13 0.80 16 5 N -0.44 -4.63 3.09 -121.98 -0.38 -5.00 16 6 C 0.07 0.45 11.06 59.85 0.66 1.12 16 7 C -0.07 -0.96 4.61 -82.14 -0.38 -1.34 16 8 C 0.59 9.83 6.61 -12.81 -0.08 9.74 16 9 O -0.52 -10.67 16.54 5.20 0.09 -10.58 16 10 N -0.60 -9.30 2.98 -174.21 -0.52 -9.82 16 11 C 0.12 1.41 6.33 -3.67 -0.02 1.39 16 12 C -0.12 -1.70 5.82 -26.65 -0.16 -1.85 16 13 C 0.08 1.36 2.47 -26.63 -0.07 1.30 16 14 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 15 O -0.39 -7.47 10.49 -35.23 -0.37 -7.84 16 16 C 0.04 0.74 6.96 37.26 0.26 1.00 16 17 C 0.14 3.36 5.38 -3.49 -0.02 3.34 16 18 N -0.59 -14.22 3.03 -164.38 -0.50 -14.72 16 19 C -0.26 -6.82 8.81 -15.06 -0.13 -6.95 16 20 H 0.07 1.78 6.33 -52.49 -0.33 1.45 16 21 C 0.01 0.28 5.05 -17.43 -0.09 0.19 16 22 N -0.90 -25.41 11.16 55.49 0.62 -24.79 16 23 Si 0.90 21.22 29.57 -169.99 -5.03 16.19 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 C 0.14 2.83 3.02 -67.53 -0.20 2.63 16 28 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 29 C 0.12 2.36 4.50 -3.71 -0.02 2.34 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.99 7.94 -51.93 -0.41 0.58 16 33 H 0.21 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.36 8.14 -51.92 -0.42 -0.06 16 36 H 0.09 0.73 7.80 -51.93 -0.41 0.32 16 37 H 0.08 0.93 6.23 -51.93 -0.32 0.61 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.08 1.37 8.14 -51.92 -0.42 0.95 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.09 2.38 6.33 -51.93 -0.33 2.05 16 45 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.10 2.29 6.86 -51.92 -0.36 1.93 16 47 H 0.08 1.41 7.35 -51.93 -0.38 1.02 16 LS Contribution 372.85 15.07 5.62 5.62 Total: -1.00 -33.44 372.85 -9.36 -42.80 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -7.17 Total: 1.46 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: -1.60 Total: 13.36 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -0.89 Total: -61.00 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.28 Total: -18.42 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.44 -9.36 -42.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074271717.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.326 kcal (2) G-P(sol) polarization free energy of solvation -33.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds