Wall clock time and date at job start Tue Mar 31 2020 17:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33314 * 126.10671 * 2 1 4 4 C 1.30855 * 109.68575 * 179.97438 * 3 2 1 5 5 N 1.34494 * 109.16448 * 359.76743 * 4 3 2 6 6 C 1.46497 * 126.47765 * 180.24754 * 5 4 3 7 7 C 1.36659 * 126.10301 * 180.02562 * 2 1 3 8 8 C 1.46762 * 126.85270 * 359.96646 * 7 2 1 9 9 O 1.21683 * 119.99497 * 278.83194 * 8 7 2 10 10 N 1.34780 * 120.00386 * 98.82193 * 8 7 2 11 11 C 1.46836 * 120.40681 * 5.91662 * 10 8 7 12 12 C 1.53366 * 109.24689 * 232.22785 * 11 10 8 13 13 C 1.52790 * 108.81562 * 306.16495 * 12 11 10 14 14 H 1.08994 * 108.95888 * 303.06610 * 13 12 11 15 15 O 1.42601 * 111.11138 * 182.53284 * 13 12 11 16 16 C 1.43145 * 113.63298 * 176.38840 * 15 13 12 17 17 C 1.53196 * 109.69647 * 61.71222 * 16 15 13 18 18 N 1.47332 * 108.81050 * 308.71029 * 17 16 15 19 19 C 1.36943 * 121.34242 * 230.30971 * 18 17 16 20 20 H 1.07997 * 119.99640 * 149.66366 * 19 18 17 21 21 C 1.38811 * 120.00228 * 329.65523 * 19 18 17 22 22 N 1.31625 * 119.99629 * 348.26260 * 21 19 18 23 23 Si 1.86793 * 120.00134 * 168.25957 * 21 19 18 24 24 H 1.48505 * 109.47073 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47310 * 120.00121 * 23 21 19 26 26 H 1.48499 * 109.46959 * 240.00364 * 23 21 19 27 27 C 1.46871 * 117.34821 * 50.32811 * 18 17 16 28 28 H 1.08993 * 109.65205 * 67.61574 * 27 18 17 29 29 C 1.47121 * 120.41157 * 185.88915 * 10 8 7 30 30 H 1.08998 * 109.47140 * 269.99274 * 1 2 3 31 31 H 1.09002 * 109.47302 * 29.99684 * 1 2 3 32 32 H 1.09003 * 109.47424 * 149.99898 * 1 2 3 33 33 H 1.08002 * 125.41610 * 179.97438 * 4 3 2 34 34 H 1.08994 * 109.47170 * 274.68339 * 6 5 4 35 35 H 1.09007 * 109.46850 * 34.67836 * 6 5 4 36 36 H 1.09000 * 109.47057 * 154.67530 * 6 5 4 37 37 H 1.08998 * 109.51231 * 352.15596 * 11 10 8 38 38 H 1.08997 * 109.50992 * 112.29556 * 11 10 8 39 39 H 1.09006 * 109.58333 * 186.36583 * 12 11 10 40 40 H 1.08998 * 109.58289 * 65.96427 * 12 11 10 41 41 H 1.09008 * 109.42630 * 181.76592 * 16 15 13 42 42 H 1.08994 * 109.42772 * 301.65188 * 16 15 13 43 43 H 1.08999 * 109.58057 * 68.55720 * 17 16 15 44 44 H 1.08998 * 109.57900 * 188.96759 * 17 16 15 45 45 H 0.96997 * 119.99525 * 180.02562 * 22 21 19 46 46 H 1.09010 * 109.72932 * 7.13449 * 29 10 8 47 47 H 1.08998 * 109.76939 * 246.47993 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5478 0.7072 0.0006 5 7 3.6122 -0.6362 0.0061 6 6 4.8305 -1.4498 0.0136 7 6 2.3123 -1.1041 -0.0005 8 6 1.8821 -2.5073 -0.0004 9 8 1.5496 -3.0416 1.0410 10 7 1.8552 -3.2040 -1.1539 11 6 2.3755 -2.6113 -2.3925 12 6 1.3125 -2.7242 -3.4923 13 6 0.8789 -4.1845 -3.6106 14 1 1.7561 -4.7991 -3.8122 15 8 -0.0692 -4.3551 -4.6620 16 6 -0.4514 -5.7182 -4.8743 17 6 -1.1217 -6.2692 -3.6118 18 7 -0.2501 -5.9996 -2.4550 19 6 0.0874 -6.9899 -1.5713 20 1 1.0378 -6.9560 -1.0595 21 6 -0.7921 -8.0371 -1.3333 22 7 -2.0322 -7.9670 -1.7691 23 14 -0.2159 -9.5458 -0.3946 24 1 1.2104 -9.3785 -0.0164 25 1 -1.0369 -9.7091 0.8319 26 1 -0.3631 -10.7487 -1.2528 27 6 0.2422 -4.6262 -2.2867 28 1 -0.5896 -3.9660 -2.0415 29 6 1.3047 -4.5680 -1.1874 30 1 -0.3633 -0.0001 1.0276 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3634 -0.8900 -0.5139 33 1 4.3970 1.3745 0.0003 34 1 5.1829 -1.5858 -1.0088 35 1 5.5999 -0.9463 0.5991 36 1 4.6152 -2.4223 0.4563 37 1 2.6126 -1.5612 -2.2219 38 1 3.2757 -3.1432 -2.7004 39 1 1.7318 -2.3896 -4.4413 40 1 0.4520 -2.1074 -3.2333 41 1 -1.1502 -5.7729 -5.7092 42 1 0.4339 -6.3115 -5.1032 43 1 -2.0848 -5.7800 -3.4664 44 1 -1.2678 -7.3444 -3.7154 45 1 -2.6468 -8.6986 -1.6024 46 1 0.8515 -4.8056 -0.2249 47 1 2.0995 -5.2811 -1.4058 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074271717.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:01 Heat of formation + Delta-G solvation = -1.531567 kcal Electronic energy + Delta-G solvation = -30800.408135 eV Core-core repulsion = 26791.606649 eV Total energy + Delta-G solvation = -4008.801486 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.29767 -41.35677 -39.96410 -37.54106 -36.55227 -35.43456 -33.63825 -33.10699 -32.29627 -31.44099 -29.58573 -28.80326 -27.24395 -26.60255 -25.56719 -24.25241 -23.39266 -22.41343 -21.59320 -21.39677 -20.03935 -18.81207 -18.67038 -17.75287 -17.18990 -17.06694 -16.73603 -16.60378 -16.40305 -16.23905 -15.67902 -15.57624 -15.21046 -14.96461 -14.69801 -14.68565 -14.47818 -14.06023 -13.96782 -13.89109 -13.53867 -13.39311 -13.25368 -13.15229 -13.01425 -12.89047 -12.77014 -12.45633 -12.38399 -12.04798 -11.96913 -11.82557 -11.57044 -11.28116 -10.96810 -10.76074 -10.58013 -10.55557 -9.88241 -9.43805 -8.72133 -7.92962 -5.45610 0.64487 1.08843 1.42767 1.45298 1.54064 1.56276 1.97519 2.10760 2.44741 2.78918 3.23310 3.30264 3.39817 3.60696 3.77824 3.84226 3.85496 3.98434 4.12245 4.15219 4.17599 4.27722 4.34915 4.38614 4.41305 4.50134 4.53157 4.56449 4.66217 4.67646 4.73866 4.81797 4.83091 4.91314 4.96065 5.02988 5.09384 5.14493 5.22013 5.33154 5.48730 5.53760 5.59705 6.12779 6.19948 6.25093 6.33027 6.84693 6.95421 7.03537 7.69497 8.26523 9.13250 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014677 B = 0.003926 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.278939 B = 7130.450295 C = 7975.464842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.048 3.952 3 N -0.523 5.523 4 C 0.222 3.778 5 N -0.438 5.438 6 C 0.061 3.939 7 C -0.091 4.091 8 C 0.597 3.403 9 O -0.572 6.572 10 N -0.593 5.593 11 C 0.118 3.882 12 C -0.115 4.115 13 C 0.083 3.917 14 H 0.062 0.938 15 O -0.392 6.392 16 C 0.052 3.948 17 C 0.148 3.852 18 N -0.604 5.604 19 C -0.262 4.262 20 H 0.076 0.924 21 C -0.044 4.044 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.264 1.264 25 H -0.297 1.297 26 H -0.285 1.285 27 C 0.134 3.866 28 H 0.005 0.995 29 C 0.141 3.859 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.260 0.740 34 H 0.109 0.891 35 H 0.127 0.873 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.113 0.887 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.052 0.948 43 H -0.004 1.004 44 H 0.069 0.931 45 H 0.251 0.749 46 H 0.063 0.937 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.969 15.624 -3.894 23.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.085 4.085 3 N -0.242 5.242 4 C -0.060 4.060 5 N -0.121 5.121 6 C -0.080 4.080 7 C -0.208 4.208 8 C 0.384 3.616 9 O -0.450 6.450 10 N -0.325 5.325 11 C -0.004 4.004 12 C -0.154 4.154 13 C 0.023 3.977 14 H 0.079 0.921 15 O -0.311 6.311 16 C -0.026 4.026 17 C 0.023 3.977 18 N -0.329 5.329 19 C -0.392 4.392 20 H 0.093 0.907 21 C -0.240 4.240 22 N -0.580 5.580 23 Si 0.793 3.207 24 H -0.188 1.188 25 H -0.224 1.224 26 H -0.211 1.211 27 C 0.027 3.973 28 H 0.023 0.977 29 C 0.018 3.982 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.276 0.724 34 H 0.128 0.872 35 H 0.145 0.855 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.132 0.868 40 H 0.081 0.919 41 H 0.126 0.874 42 H 0.070 0.930 43 H 0.014 0.986 44 H 0.087 0.913 45 H 0.060 0.940 46 H 0.082 0.918 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 16.507 16.028 -3.429 23.262 hybrid contribution -0.461 -2.340 0.985 2.581 sum 16.046 13.688 -2.444 21.232 Atomic orbital electron populations 1.20114 0.87443 1.02926 1.02664 1.20940 0.96719 0.87273 1.03576 1.70019 1.01815 1.29970 1.22445 1.25925 0.97426 0.81695 1.00959 1.45531 1.05431 1.08287 1.52808 1.22503 0.83676 0.95565 1.06235 1.20298 0.86732 0.93205 1.20545 1.17314 0.77263 0.83953 0.83072 1.90837 1.50464 1.70507 1.33145 1.48280 1.59753 1.15240 1.09266 1.21920 0.96684 1.00140 0.81610 1.21844 0.99351 0.93630 1.00530 1.22465 0.90919 0.97560 0.86713 0.92055 1.87756 1.62518 1.27225 1.53601 1.23191 0.99326 0.82097 0.97949 1.21276 0.90881 0.99939 0.85648 1.44272 1.57909 1.03733 1.27020 1.19461 0.99249 1.01180 1.19298 0.90684 1.25908 0.94777 1.03053 1.00258 1.70155 1.04477 1.32615 1.50739 0.85234 0.78153 0.79567 0.77696 1.18808 1.22397 1.21112 1.21427 0.94044 0.87010 0.94804 0.97720 1.21375 0.95996 0.81506 0.99277 0.91140 0.89178 0.92671 0.72389 0.87246 0.85461 0.91550 0.88011 0.88121 0.86828 0.91874 0.87364 0.92961 0.98600 0.91267 0.93969 0.91797 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.00 10.24 71.24 0.73 -1.27 16 2 C 0.05 1.33 7.15 41.97 0.30 1.63 16 3 N -0.52 -12.68 11.20 -187.59 -2.10 -14.78 16 4 C 0.22 3.46 12.52 180.33 2.26 5.72 16 5 N -0.44 -7.69 3.09 -539.82 -1.67 -9.36 16 6 C 0.06 0.56 11.06 127.77 1.41 1.98 16 7 C -0.09 -2.46 4.61 40.01 0.18 -2.28 16 8 C 0.60 20.08 6.61 86.47 0.57 20.65 16 9 O -0.57 -24.75 16.54 -4.29 -0.07 -24.82 16 10 N -0.59 -18.22 2.98 -823.29 -2.45 -20.68 16 11 C 0.12 2.53 6.33 86.44 0.55 3.08 16 12 C -0.12 -2.85 5.82 30.65 0.18 -2.67 16 13 C 0.08 2.79 2.47 30.66 0.08 2.87 16 14 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 15 O -0.39 -14.50 10.49 -148.98 -1.56 -16.06 16 16 C 0.05 1.95 6.96 72.05 0.50 2.45 16 17 C 0.15 7.17 5.38 86.29 0.46 7.64 16 18 N -0.60 -30.29 3.03 -673.96 -2.04 -32.33 16 19 C -0.26 -14.10 8.81 84.03 0.74 -13.36 16 20 H 0.08 3.89 6.33 -2.91 -0.02 3.87 16 21 C -0.04 -2.44 5.05 84.86 0.43 -2.01 16 22 N -0.93 -55.18 11.16 21.65 0.24 -54.94 16 23 Si 0.97 44.71 29.57 68.60 2.03 46.74 16 24 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 26 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 27 C 0.13 5.71 3.02 45.05 0.14 5.84 16 28 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 29 C 0.14 5.48 4.50 86.26 0.39 5.87 16 30 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.05 1.63 7.94 -2.39 -0.02 1.61 16 33 H 0.26 1.08 8.06 -2.91 -0.02 1.05 16 34 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.13 0.32 8.14 -2.38 -0.02 0.30 16 36 H 0.07 0.95 7.80 -2.39 -0.02 0.93 16 37 H 0.10 1.91 6.23 -2.39 -0.01 1.89 16 38 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 40 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.11 3.47 8.14 -2.38 -0.02 3.45 16 42 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 44 H 0.07 3.67 6.33 -2.39 -0.02 3.65 16 45 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 46 H 0.06 3.00 6.86 -2.38 -0.02 2.98 16 47 H 0.08 3.05 7.35 -2.39 -0.02 3.03 16 Total: -1.00 -78.71 372.85 2.27 -76.44 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.97 Total: 13.66 kcal Atomic # 6 Polarization: 27.21 SS G_CDS: 8.92 Total: 36.13 kcal Atomic # 7 Polarization: -124.06 SS G_CDS: -8.02 Total: -132.08 kcal Atomic # 8 Polarization: -39.25 SS G_CDS: -1.63 Total: -40.88 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -78.71 2.27 -76.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074271717.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.913 kcal (2) G-P(sol) polarization free energy of solvation -78.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds