Wall clock time and date at job start Tue Mar 31 2020 18:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30863 * 125.41635 * 2 1 4 4 C 1.33323 * 109.68145 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.10295 * 179.97438 * 4 3 2 6 6 C 1.36662 * 107.78663 * 0.02562 * 4 3 2 7 7 C 1.46762 * 126.84405 * 180.02562 * 6 4 3 8 8 O 1.21680 * 120.00101 * 33.91930 * 7 6 4 9 9 N 1.34781 * 119.99996 * 213.91743 * 7 6 4 10 10 C 1.46842 * 120.40921 * 4.92862 * 9 7 6 11 11 C 1.53788 * 109.01633 * 127.71344 * 10 9 7 12 12 C 1.52795 * 108.74638 * 54.06366 * 11 10 9 13 13 H 1.09004 * 109.34355 * 57.02734 * 12 11 10 14 14 O 1.42595 * 111.11261 * 177.34109 * 12 11 10 15 15 C 1.43148 * 113.63408 * 183.61174 * 14 12 11 16 16 C 1.53196 * 109.74193 * 298.31942 * 15 14 12 17 17 N 1.47349 * 108.80232 * 51.20022 * 16 15 14 18 18 C 1.36941 * 121.30315 * 129.74482 * 17 16 15 19 19 H 1.08001 * 120.00109 * 208.29131 * 18 17 16 20 20 C 1.38816 * 119.99756 * 28.29083 * 18 17 16 21 21 N 1.31617 * 120.00384 * 13.03972 * 20 18 17 22 22 Si 1.86804 * 119.99812 * 193.04008 * 20 18 17 23 23 H 1.48505 * 109.47135 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46993 * 119.99913 * 22 20 18 25 25 H 1.48488 * 109.47291 * 240.00120 * 22 20 18 26 26 C 1.46869 * 117.39180 * 309.76625 * 17 16 15 27 27 H 1.08996 * 110.20754 * 292.02730 * 26 17 16 28 28 C 1.47127 * 120.41145 * 185.20688 * 9 7 6 29 29 N 1.34490 * 125.41647 * 179.97438 * 2 1 3 30 30 H 0.97002 * 126.47872 * 0.03168 * 29 2 1 31 31 H 1.08997 * 109.47181 * 90.01772 * 1 2 3 32 32 H 1.08997 * 109.46911 * 210.02267 * 1 2 3 33 33 H 1.09001 * 109.47040 * 330.02349 * 1 2 3 34 34 H 1.09003 * 109.46629 * 90.02861 * 5 4 3 35 35 H 1.09000 * 109.47148 * 210.01902 * 5 4 3 36 36 H 1.08991 * 109.47379 * 330.02770 * 5 4 3 37 37 H 1.08999 * 109.50719 * 247.69959 * 10 9 7 38 38 H 1.09000 * 109.50861 * 7.83661 * 10 9 7 39 39 H 1.08994 * 109.72402 * 294.22136 * 11 10 9 40 40 H 1.08993 * 109.62239 * 173.84126 * 11 10 9 41 41 H 1.09007 * 109.42694 * 58.39525 * 15 14 12 42 42 H 1.08998 * 109.43349 * 178.23391 * 15 14 12 43 43 H 1.09002 * 109.58652 * 171.00203 * 16 15 14 44 44 H 1.09001 * 109.57840 * 291.26967 * 16 15 14 45 45 H 0.96995 * 120.00179 * 179.97438 * 21 20 18 46 46 H 1.09005 * 109.72674 * 352.87757 * 28 9 7 47 47 H 1.08995 * 109.72993 * 113.54825 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0665 0.0000 4 6 3.5487 0.7049 0.0006 5 6 4.7335 1.6361 0.0002 6 6 3.5976 -0.6608 0.0004 7 6 4.8029 -1.4982 0.0013 8 8 5.8009 -1.1274 0.5904 9 7 4.8042 -2.6781 -0.6502 10 6 3.6439 -3.0853 -1.4529 11 6 4.1208 -3.4721 -2.8628 12 6 5.2182 -4.5279 -2.7375 13 1 4.8346 -5.3831 -2.1811 14 8 5.6558 -4.9688 -4.0211 15 6 6.6271 -6.0189 -3.9669 16 6 7.8834 -5.5249 -3.2426 17 7 7.4853 -4.9240 -1.9574 18 6 8.0940 -5.2840 -0.7848 19 1 7.5509 -5.2224 0.1467 20 6 9.4092 -5.7281 -0.7934 21 7 10.1519 -5.5650 -1.8676 22 14 10.1248 -6.5574 0.7198 23 1 9.0922 -6.6193 1.7854 24 1 10.5587 -7.9340 0.3712 25 1 11.2920 -5.7786 1.2057 26 6 6.4097 -3.9242 -1.9833 27 1 6.7469 -3.0216 -2.4928 28 6 5.9657 -3.5768 -0.5611 29 7 2.2864 -1.0960 0.0005 30 1 1.9850 -2.0180 0.0005 31 1 -0.3633 -0.0003 -1.0276 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3633 0.8902 0.5135 34 1 5.0192 1.8608 1.0278 35 1 5.5692 1.1606 -0.5134 36 1 4.4694 2.5601 -0.5138 37 1 3.1579 -3.9401 -0.9826 38 1 2.9391 -2.2566 -1.5203 39 1 4.5162 -2.5930 -3.3715 40 1 3.2858 -3.8792 -3.4328 41 1 6.2103 -6.8708 -3.4295 42 1 6.8890 -6.3233 -4.9802 43 1 8.5545 -6.3644 -3.0611 44 1 8.3890 -4.7790 -3.8559 45 1 11.0710 -5.8749 -1.8734 46 1 6.7782 -3.0768 -0.0338 47 1 5.6869 -4.4869 -0.0301 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074341119.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:47 Heat of formation + Delta-G solvation = 14.410762 kcal Electronic energy + Delta-G solvation = -30376.828290 eV Core-core repulsion = 26368.718116 eV Total energy + Delta-G solvation = -4008.110174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -42.51379 -39.97491 -38.48649 -36.23945 -34.77837 -33.60460 -32.60602 -31.62390 -31.43373 -29.94330 -29.30351 -27.47205 -26.63741 -24.91266 -24.08376 -22.43830 -21.89409 -21.31262 -20.72977 -19.76287 -19.29608 -17.75796 -16.91563 -16.57709 -15.93115 -15.77862 -15.44520 -15.15694 -15.02601 -14.62122 -14.12780 -14.06768 -13.76130 -13.63679 -13.31307 -13.20582 -13.14360 -12.94141 -12.78611 -12.74267 -12.65970 -12.37641 -12.10879 -11.98458 -11.44905 -11.06665 -11.03943 -10.93636 -10.68546 -10.45460 -10.33519 -10.24860 -10.09301 -10.02934 -9.83976 -9.66540 -9.06287 -8.61670 -8.59499 -8.36661 -6.77404 -5.88271 -3.35960 1.26733 2.51947 2.71191 2.91338 3.30608 3.31903 3.40124 3.41513 4.04034 4.16217 4.37553 4.47235 4.63592 4.72488 4.93841 4.99534 5.10354 5.15688 5.19567 5.28582 5.30645 5.35075 5.47507 5.57002 5.62627 5.65053 5.78379 5.80077 5.82695 5.92218 5.99291 6.02572 6.05740 6.16735 6.26704 6.38083 6.48519 6.53134 6.60475 6.79379 7.01296 7.07608 7.40096 7.47613 7.65998 7.78376 7.82742 8.17661 8.28289 9.05232 9.67871 10.25751 11.19635 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015222 B = 0.003601 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.046774 B = 7773.986304 C = 8836.412810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.231 3.769 3 N -0.492 5.492 4 C 0.089 3.911 5 C -0.072 4.072 6 C -0.080 4.080 7 C 0.592 3.408 8 O -0.515 6.515 9 N -0.608 5.608 10 C 0.101 3.899 11 C -0.121 4.121 12 C 0.078 3.922 13 H 0.052 0.948 14 O -0.389 6.389 15 C 0.039 3.961 16 C 0.143 3.857 17 N -0.587 5.587 18 C -0.260 4.260 19 H 0.072 0.928 20 C 0.008 3.992 21 N -0.901 5.901 22 Si 0.905 3.095 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.288 1.288 26 C 0.137 3.863 27 H 0.038 0.962 28 C 0.125 3.875 29 N -0.553 5.553 30 H 0.422 0.578 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.040 0.960 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.028 0.972 45 H 0.255 0.745 46 H 0.106 0.894 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.481 5.735 0.157 20.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.033 4.033 3 N -0.214 5.214 4 C -0.044 4.044 5 C -0.130 4.130 6 C -0.195 4.195 7 C 0.378 3.622 8 O -0.389 6.389 9 N -0.342 5.342 10 C -0.022 4.022 11 C -0.160 4.160 12 C 0.018 3.982 13 H 0.070 0.930 14 O -0.308 6.308 15 C -0.039 4.039 16 C 0.017 3.983 17 N -0.312 5.312 18 C -0.389 4.389 19 H 0.090 0.910 20 C -0.191 4.191 21 N -0.544 5.544 22 Si 0.734 3.266 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.215 1.215 26 C 0.029 3.971 27 H 0.056 0.944 28 C 0.004 3.996 29 N -0.161 5.161 30 H 0.263 0.737 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.059 0.941 42 H 0.100 0.900 43 H 0.115 0.885 44 H 0.046 0.954 45 H 0.065 0.935 46 H 0.124 0.876 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.034 6.753 0.317 20.199 hybrid contribution 0.687 -2.009 0.795 2.267 sum -18.347 4.744 1.112 18.983 Atomic orbital electron populations 1.20282 0.84301 1.04435 1.04003 1.23382 0.95762 0.81608 1.02520 1.70057 1.01596 1.28273 1.21432 1.20992 0.93133 0.90167 1.00150 1.20172 0.92558 0.97028 1.03209 1.20912 0.83853 0.95423 1.19345 1.16912 0.85894 0.80012 0.79353 1.90868 1.33262 1.70644 1.44155 1.48221 1.18576 1.18901 1.48527 1.21993 0.88361 1.00202 0.91667 1.21870 0.98726 0.99743 0.95686 1.22416 0.94375 0.95687 0.85752 0.93030 1.87739 1.60060 1.55446 1.27592 1.23353 0.91105 0.88902 1.00521 1.21449 0.92530 0.98801 0.85512 1.44012 1.39958 1.42728 1.04470 1.19164 0.93476 1.39886 0.86363 0.91037 1.25118 0.95597 1.01063 0.97350 1.69997 1.07595 1.48531 1.28319 0.86185 0.79086 0.78923 0.82371 1.20155 1.21495 1.21453 1.21279 0.89687 0.92755 0.93347 0.94425 1.21837 0.87091 0.92461 0.98238 1.43529 1.05925 1.10173 1.56460 0.73715 0.89602 0.90503 0.88765 0.90404 0.90393 0.90969 0.91118 0.89896 0.90632 0.90209 0.94129 0.90010 0.88524 0.95355 0.93453 0.87602 0.90746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.51 36.01 0.38 0.00 16 2 C 0.23 2.31 8.12 -155.61 -1.26 1.05 16 3 N -0.49 -6.53 11.20 -6.84 -0.08 -6.61 16 4 C 0.09 1.27 7.14 -82.52 -0.59 0.68 16 5 C -0.07 -0.94 9.81 36.00 0.35 -0.59 16 6 C -0.08 -1.11 6.08 -82.14 -0.50 -1.61 16 7 C 0.59 9.79 7.40 -12.81 -0.09 9.69 16 8 O -0.51 -10.35 15.43 5.21 0.08 -10.27 16 9 N -0.61 -9.40 2.97 -173.94 -0.52 -9.91 16 10 C 0.10 1.16 5.46 -3.45 -0.02 1.15 16 11 C -0.12 -1.63 5.84 -26.43 -0.15 -1.78 16 12 C 0.08 1.36 2.48 -26.63 -0.07 1.29 16 13 H 0.05 0.91 8.13 -51.93 -0.42 0.48 16 14 O -0.39 -7.50 10.49 -35.23 -0.37 -7.87 16 15 C 0.04 0.75 6.95 37.26 0.26 1.01 16 16 C 0.14 3.35 5.41 -3.48 -0.02 3.33 16 17 N -0.59 -14.32 3.04 -164.36 -0.50 -14.81 16 18 C -0.26 -6.82 8.87 -15.06 -0.13 -6.95 16 19 H 0.07 1.82 6.28 -52.49 -0.33 1.49 16 20 C 0.01 0.22 5.04 -17.43 -0.09 0.13 16 21 N -0.90 -25.52 11.08 55.49 0.61 -24.91 16 22 Si 0.90 21.30 29.57 -169.99 -5.03 16.27 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 C 0.14 2.86 3.03 -67.53 -0.20 2.65 16 27 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 28 C 0.12 2.37 4.50 -3.71 -0.02 2.35 16 29 N -0.55 -5.51 4.73 -7.01 -0.03 -5.54 16 30 H 0.42 2.95 7.37 -40.82 -0.30 2.65 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.10 7.50 -51.93 -0.39 0.71 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.80 4.72 -51.93 -0.25 0.55 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 42 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.10 2.47 6.21 -51.93 -0.32 2.15 16 44 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.11 2.33 6.80 -51.93 -0.35 1.98 16 47 H 0.07 1.39 7.37 -51.93 -0.38 1.01 16 LS Contribution 366.85 15.07 5.53 5.53 Total: -1.00 -33.27 366.85 -9.41 -42.68 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -6.95 Total: 3.05 kcal Atomic # 6 Polarization: 14.56 SS G_CDS: -2.16 Total: 12.41 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: -0.51 Total: -61.79 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.29 Total: -18.14 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.27 -9.41 -42.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074341119.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.090 kcal (2) G-P(sol) polarization free energy of solvation -33.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds