Wall clock time and date at job start Tue Mar 31 2020 18:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30863 * 125.41635 * 2 1 4 4 C 1.33323 * 109.68145 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.10295 * 179.97438 * 4 3 2 6 6 C 1.36662 * 107.78663 * 0.02562 * 4 3 2 7 7 C 1.46762 * 126.84405 * 180.02562 * 6 4 3 8 8 O 1.21680 * 120.00101 * 33.91930 * 7 6 4 9 9 N 1.34781 * 119.99996 * 213.91743 * 7 6 4 10 10 C 1.46842 * 120.40921 * 4.92862 * 9 7 6 11 11 C 1.53788 * 109.01633 * 127.71344 * 10 9 7 12 12 C 1.52795 * 108.74638 * 54.06366 * 11 10 9 13 13 H 1.09004 * 109.34355 * 57.02734 * 12 11 10 14 14 O 1.42595 * 111.11261 * 177.34109 * 12 11 10 15 15 C 1.43148 * 113.63408 * 183.61174 * 14 12 11 16 16 C 1.53196 * 109.74193 * 298.31942 * 15 14 12 17 17 N 1.47349 * 108.80232 * 51.20022 * 16 15 14 18 18 C 1.36941 * 121.30315 * 129.74482 * 17 16 15 19 19 H 1.08001 * 120.00109 * 208.29131 * 18 17 16 20 20 C 1.38816 * 119.99756 * 28.29083 * 18 17 16 21 21 N 1.31617 * 120.00384 * 13.03972 * 20 18 17 22 22 Si 1.86804 * 119.99812 * 193.04008 * 20 18 17 23 23 H 1.48505 * 109.47135 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46993 * 119.99913 * 22 20 18 25 25 H 1.48488 * 109.47291 * 240.00120 * 22 20 18 26 26 C 1.46869 * 117.39180 * 309.76625 * 17 16 15 27 27 H 1.08996 * 110.20754 * 292.02730 * 26 17 16 28 28 C 1.47127 * 120.41145 * 185.20688 * 9 7 6 29 29 N 1.34490 * 125.41647 * 179.97438 * 2 1 3 30 30 H 0.97002 * 126.47872 * 0.03168 * 29 2 1 31 31 H 1.08997 * 109.47181 * 90.01772 * 1 2 3 32 32 H 1.08997 * 109.46911 * 210.02267 * 1 2 3 33 33 H 1.09001 * 109.47040 * 330.02349 * 1 2 3 34 34 H 1.09003 * 109.46629 * 90.02861 * 5 4 3 35 35 H 1.09000 * 109.47148 * 210.01902 * 5 4 3 36 36 H 1.08991 * 109.47379 * 330.02770 * 5 4 3 37 37 H 1.08999 * 109.50719 * 247.69959 * 10 9 7 38 38 H 1.09000 * 109.50861 * 7.83661 * 10 9 7 39 39 H 1.08994 * 109.72402 * 294.22136 * 11 10 9 40 40 H 1.08993 * 109.62239 * 173.84126 * 11 10 9 41 41 H 1.09007 * 109.42694 * 58.39525 * 15 14 12 42 42 H 1.08998 * 109.43349 * 178.23391 * 15 14 12 43 43 H 1.09002 * 109.58652 * 171.00203 * 16 15 14 44 44 H 1.09001 * 109.57840 * 291.26967 * 16 15 14 45 45 H 0.96995 * 120.00179 * 179.97438 * 21 20 18 46 46 H 1.09005 * 109.72674 * 352.87757 * 28 9 7 47 47 H 1.08995 * 109.72993 * 113.54825 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0665 0.0000 4 6 3.5487 0.7049 0.0006 5 6 4.7335 1.6361 0.0002 6 6 3.5976 -0.6608 0.0004 7 6 4.8029 -1.4982 0.0013 8 8 5.8009 -1.1274 0.5904 9 7 4.8042 -2.6781 -0.6502 10 6 3.6439 -3.0853 -1.4529 11 6 4.1208 -3.4721 -2.8628 12 6 5.2182 -4.5279 -2.7375 13 1 4.8346 -5.3831 -2.1811 14 8 5.6558 -4.9688 -4.0211 15 6 6.6271 -6.0189 -3.9669 16 6 7.8834 -5.5249 -3.2426 17 7 7.4853 -4.9240 -1.9574 18 6 8.0940 -5.2840 -0.7848 19 1 7.5509 -5.2224 0.1467 20 6 9.4092 -5.7281 -0.7934 21 7 10.1519 -5.5650 -1.8676 22 14 10.1248 -6.5574 0.7198 23 1 9.0922 -6.6193 1.7854 24 1 10.5587 -7.9340 0.3712 25 1 11.2920 -5.7786 1.2057 26 6 6.4097 -3.9242 -1.9833 27 1 6.7469 -3.0216 -2.4928 28 6 5.9657 -3.5768 -0.5611 29 7 2.2864 -1.0960 0.0005 30 1 1.9850 -2.0180 0.0005 31 1 -0.3633 -0.0003 -1.0276 32 1 -0.3633 -0.8898 0.5142 33 1 -0.3633 0.8902 0.5135 34 1 5.0192 1.8608 1.0278 35 1 5.5692 1.1606 -0.5134 36 1 4.4694 2.5601 -0.5138 37 1 3.1579 -3.9401 -0.9826 38 1 2.9391 -2.2566 -1.5203 39 1 4.5162 -2.5930 -3.3715 40 1 3.2858 -3.8792 -3.4328 41 1 6.2103 -6.8708 -3.4295 42 1 6.8890 -6.3233 -4.9802 43 1 8.5545 -6.3644 -3.0611 44 1 8.3890 -4.7790 -3.8559 45 1 11.0710 -5.8749 -1.8734 46 1 6.7782 -3.0768 -0.0338 47 1 5.6869 -4.4869 -0.0301 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074341119.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:44 Heat of formation + Delta-G solvation = -8.983901 kcal Electronic energy + Delta-G solvation = -30377.842759 eV Core-core repulsion = 26368.718116 eV Total energy + Delta-G solvation = -4009.124643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -43.45208 -41.35328 -39.95712 -37.60695 -36.58033 -34.58570 -33.76218 -33.16412 -32.80819 -31.43864 -30.09343 -29.10918 -27.95153 -26.32832 -25.57107 -23.94933 -23.20644 -22.22456 -22.06577 -21.39508 -20.32499 -18.93816 -18.70579 -17.75899 -17.30630 -17.00785 -16.92871 -16.67791 -16.28471 -16.12535 -15.61366 -15.55360 -15.04773 -14.81905 -14.72760 -14.69700 -14.18665 -14.07824 -13.93711 -13.92251 -13.47886 -13.32216 -13.18347 -13.02895 -13.01272 -12.89281 -12.75546 -12.48307 -12.38264 -12.06037 -11.97041 -11.84892 -11.52664 -11.30330 -11.06128 -10.94886 -10.78183 -10.56939 -9.92238 -9.39845 -8.76302 -7.93609 -5.44500 0.24596 1.42620 1.45021 1.54307 1.55794 1.58975 1.88675 2.19691 2.44406 2.78070 3.22133 3.26034 3.37200 3.46894 3.74807 3.79459 3.93124 3.96799 4.08373 4.13377 4.16319 4.30632 4.34228 4.47777 4.50868 4.51728 4.56764 4.67896 4.72205 4.73207 4.80458 4.81732 4.91990 4.94168 5.00093 5.03801 5.07933 5.17830 5.20343 5.32447 5.49597 5.52712 5.58797 6.15680 6.22801 6.30604 6.31581 6.85911 6.91562 7.02131 7.68872 8.24593 9.12627 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015222 B = 0.003601 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.046774 B = 7773.986304 C = 8836.412810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.254 3.746 3 N -0.523 5.523 4 C 0.077 3.923 5 C -0.071 4.071 6 C -0.099 4.099 7 C 0.590 3.410 8 O -0.564 6.564 9 N -0.605 5.605 10 C 0.101 3.899 11 C -0.114 4.114 12 C 0.082 3.918 13 H 0.064 0.936 14 O -0.393 6.393 15 C 0.052 3.948 16 C 0.146 3.854 17 N -0.604 5.604 18 C -0.261 4.261 19 H 0.077 0.923 20 C -0.047 4.047 21 N -0.936 5.936 22 Si 0.967 3.033 23 H -0.264 1.264 24 H -0.285 1.285 25 H -0.297 1.297 26 C 0.133 3.867 27 H 0.001 0.999 28 C 0.141 3.859 29 N -0.538 5.538 30 H 0.439 0.561 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.059 0.941 40 H 0.118 0.882 41 H 0.053 0.947 42 H 0.108 0.892 43 H 0.072 0.928 44 H -0.006 1.006 45 H 0.251 0.749 46 H 0.064 0.936 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.108 4.868 0.348 24.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.010 4.010 3 N -0.245 5.245 4 C -0.057 4.057 5 C -0.128 4.128 6 C -0.214 4.214 7 C 0.379 3.621 8 O -0.443 6.443 9 N -0.338 5.338 10 C -0.021 4.021 11 C -0.152 4.152 12 C 0.023 3.977 13 H 0.081 0.919 14 O -0.312 6.312 15 C -0.025 4.025 16 C 0.021 3.979 17 N -0.329 5.329 18 C -0.391 4.391 19 H 0.095 0.905 20 C -0.243 4.243 21 N -0.581 5.581 22 Si 0.795 3.205 23 H -0.188 1.188 24 H -0.211 1.211 25 H -0.224 1.224 26 C 0.026 3.974 27 H 0.018 0.982 28 C 0.018 3.982 29 N -0.148 5.148 30 H 0.283 0.717 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.116 0.884 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.078 0.922 40 H 0.136 0.864 41 H 0.071 0.929 42 H 0.126 0.874 43 H 0.090 0.910 44 H 0.012 0.988 45 H 0.060 0.940 46 H 0.083 0.917 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -23.738 5.858 0.489 24.455 hybrid contribution 2.055 -1.626 0.714 2.716 sum -21.683 4.232 1.202 22.125 Atomic orbital electron populations 1.20577 0.80434 1.06117 1.05828 1.24340 0.97446 0.80611 0.98642 1.70095 1.01182 1.29925 1.23320 1.21180 0.93937 0.90554 1.00061 1.20130 0.92097 0.97538 1.03081 1.20363 0.84418 0.94824 1.21809 1.17282 0.86236 0.80030 0.78539 1.90836 1.35361 1.71758 1.46299 1.48218 1.18618 1.18154 1.48815 1.22343 0.87029 1.02573 0.90123 1.21898 0.98296 0.97756 0.97288 1.22494 0.93590 0.96960 0.84673 0.91852 1.87748 1.59538 1.55416 1.28521 1.23188 0.88897 0.88947 1.01496 1.21309 0.94372 0.96912 0.85332 1.44304 1.40662 1.43725 1.04233 1.19501 0.93652 1.38613 0.87325 0.90502 1.25882 0.96133 1.02313 0.99963 1.70159 1.07615 1.50139 1.30235 0.85206 0.78064 0.77682 0.79528 1.18812 1.21112 1.22405 1.21422 0.90209 0.90933 0.94826 0.98154 1.21371 0.87557 0.92763 0.96522 1.43389 1.04185 1.11234 1.55981 0.71716 0.87506 0.87498 0.88420 0.90499 0.92304 0.89505 0.87357 0.87398 0.92224 0.86370 0.92871 0.87374 0.90965 0.98818 0.93963 0.91713 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.51 71.24 0.75 0.35 16 2 C 0.25 4.17 8.12 138.20 1.12 5.29 16 3 N -0.52 -12.85 11.20 -175.57 -1.97 -14.82 16 4 C 0.08 2.15 7.14 41.96 0.30 2.45 16 5 C -0.07 -1.92 9.81 71.23 0.70 -1.22 16 6 C -0.10 -2.63 6.08 40.01 0.24 -2.38 16 7 C 0.59 19.74 7.40 86.47 0.64 20.38 16 8 O -0.56 -24.03 15.43 -4.29 -0.07 -24.09 16 9 N -0.61 -18.26 2.97 -822.44 -2.45 -20.71 16 10 C 0.10 1.95 5.46 86.58 0.47 2.42 16 11 C -0.11 -2.68 5.84 30.79 0.18 -2.50 16 12 C 0.08 2.73 2.48 30.66 0.08 2.81 16 13 H 0.06 2.01 8.13 -2.38 -0.02 1.99 16 14 O -0.39 -14.46 10.49 -148.98 -1.56 -16.03 16 15 C 0.05 1.96 6.95 72.05 0.50 2.46 16 16 C 0.15 7.13 5.41 86.28 0.47 7.59 16 17 N -0.60 -30.45 3.04 -673.91 -2.05 -32.50 16 18 C -0.26 -14.11 8.87 84.03 0.74 -13.37 16 19 H 0.08 3.99 6.28 -2.91 -0.02 3.97 16 20 C -0.05 -2.63 5.04 84.86 0.43 -2.20 16 21 N -0.94 -55.47 11.08 21.65 0.24 -55.23 16 22 Si 0.97 44.86 29.57 68.60 2.03 46.89 16 23 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 25 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 26 C 0.13 5.69 3.03 45.05 0.14 5.83 16 27 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 28 C 0.14 5.45 4.50 86.26 0.39 5.84 16 29 N -0.54 -8.86 4.73 -176.11 -0.83 -9.69 16 30 H 0.44 4.00 7.37 -92.71 -0.68 3.32 16 31 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.06 1.79 7.50 -2.39 -0.02 1.77 16 36 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.11 1.60 4.72 -2.39 -0.01 1.59 16 39 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 42 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 43 H 0.07 3.85 6.21 -2.39 -0.01 3.84 16 44 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 45 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 46 H 0.06 3.04 6.80 -2.38 -0.02 3.03 16 47 H 0.08 3.03 7.37 -2.39 -0.02 3.02 16 Total: -1.00 -78.79 366.85 0.81 -77.98 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.32 Total: 14.44 kcal Atomic # 6 Polarization: 26.62 SS G_CDS: 7.14 Total: 33.76 kcal Atomic # 7 Polarization: -125.90 SS G_CDS: -7.06 Total: -132.95 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -1.63 Total: -40.12 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -78.79 0.81 -77.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074341119.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.995 kcal (2) G-P(sol) polarization free energy of solvation -78.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds