Wall clock time and date at job start Tue Mar 31 2020 18:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30847 * 125.42103 * 2 1 4 4 C 1.33323 * 109.68745 * 179.78136 * 3 2 1 5 5 C 1.50692 * 126.11014 * 180.27596 * 4 3 2 6 6 C 1.36663 * 107.78254 * 0.38225 * 4 3 2 7 7 C 1.46769 * 126.84284 * 179.89276 * 6 4 3 8 8 O 1.21679 * 120.00020 * 37.39459 * 7 6 4 9 9 N 1.34777 * 119.99747 * 217.39252 * 7 6 4 10 10 C 1.46986 * 120.72409 * 5.95474 * 9 7 6 11 11 C 1.53159 * 108.61838 * 125.53558 * 10 9 7 12 12 C 1.52515 * 109.79101 * 54.42213 * 11 10 9 13 13 H 1.09003 * 108.93103 * 180.33153 * 12 11 10 14 14 O 1.42688 * 110.62131 * 61.29461 * 12 11 10 15 15 C 1.43069 * 113.87470 * 174.65503 * 14 12 11 16 16 C 1.53231 * 109.45404 * 61.63738 * 15 14 12 17 17 N 1.47181 * 108.69203 * 308.41973 * 16 15 14 18 18 C 1.36936 * 121.22284 * 230.92599 * 17 16 15 19 19 H 1.08001 * 119.99516 * 152.66050 * 18 17 16 20 20 C 1.38813 * 120.00373 * 332.66501 * 18 17 16 21 21 N 1.31620 * 119.99662 * 346.14672 * 20 18 17 22 22 Si 1.86796 * 120.00174 * 166.15022 * 20 18 17 23 23 H 1.48504 * 109.47007 * 89.99743 * 22 20 18 24 24 H 1.48502 * 109.47242 * 209.99898 * 22 20 18 25 25 H 1.48499 * 109.47036 * 330.00183 * 22 20 18 26 26 C 1.47592 * 117.54927 * 50.95124 * 17 16 15 27 27 H 1.08997 * 110.31522 * 187.69388 * 26 17 16 28 28 C 1.46846 * 120.74857 * 185.66356 * 9 7 6 29 29 N 1.34496 * 125.41246 * 180.02562 * 2 1 3 30 30 H 0.96996 * 126.47812 * 0.02562 * 29 2 1 31 31 H 1.08998 * 109.46848 * 269.97514 * 1 2 3 32 32 H 1.09003 * 109.46356 * 29.97542 * 1 2 3 33 33 H 1.08996 * 109.46999 * 149.97218 * 1 2 3 34 34 H 1.09001 * 109.47179 * 270.12417 * 5 4 3 35 35 H 1.08997 * 109.47196 * 30.12451 * 5 4 3 36 36 H 1.09002 * 109.47193 * 150.12591 * 5 4 3 37 37 H 1.08994 * 109.64257 * 5.74427 * 10 9 7 38 38 H 1.08998 * 109.64352 * 245.32567 * 10 9 7 39 39 H 1.08997 * 109.41599 * 174.52263 * 11 10 9 40 40 H 1.08997 * 109.41321 * 294.32665 * 11 10 9 41 41 H 1.08997 * 109.47386 * 301.64397 * 15 14 12 42 42 H 1.08997 * 109.48214 * 181.63341 * 15 14 12 43 43 H 1.08991 * 109.60520 * 188.65438 * 16 15 14 44 44 H 1.09006 * 109.60126 * 68.17579 * 16 15 14 45 45 H 0.96998 * 120.00078 * 179.97438 * 21 20 18 46 46 H 1.09004 * 109.34241 * 114.31402 * 28 9 7 47 47 H 1.08993 * 109.53474 * 354.22199 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2654 1.0663 0.0000 4 6 3.5487 0.7048 0.0048 5 6 4.7336 1.6358 0.0123 6 6 3.5976 -0.6610 -0.0007 7 6 4.8029 -1.4985 -0.0005 8 8 5.7783 -1.1608 0.6438 9 7 4.8293 -2.6416 -0.7140 10 6 3.7122 -3.0000 -1.5996 11 6 4.2655 -3.2603 -3.0038 12 6 5.3725 -4.3073 -2.9367 13 1 5.7598 -4.4773 -3.9413 14 8 4.8657 -5.5430 -2.4346 15 6 5.8178 -6.6107 -2.4558 16 6 7.0091 -6.2499 -1.5621 17 7 7.5024 -4.9182 -1.9485 18 6 8.8283 -4.7020 -2.2142 19 1 9.1217 -3.9121 -2.8899 20 6 9.7951 -5.4979 -1.6153 21 7 9.4747 -6.2692 -0.5980 22 14 11.5506 -5.4742 -2.2530 23 1 12.3235 -4.4279 -1.5365 24 1 12.1793 -6.7996 -2.0216 25 1 11.5449 -5.1762 -3.7077 26 6 6.5157 -3.8244 -2.0386 27 1 6.9774 -2.9320 -2.4611 28 6 5.9772 -3.5534 -0.6289 29 7 2.2864 -1.0961 -0.0005 30 1 1.9849 -2.0181 -0.0013 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3632 0.8903 -0.5135 33 1 -0.3633 -0.8897 -0.5142 34 1 5.0225 1.8645 -1.0136 35 1 4.4679 2.5579 0.5291 36 1 5.5676 1.1583 0.5267 37 1 2.9949 -2.1802 -1.6346 38 1 3.2227 -3.8994 -1.2262 39 1 3.4638 -3.6213 -3.6480 40 1 4.6678 -2.3333 -3.4123 41 1 6.1644 -6.7684 -3.4771 42 1 5.3494 -7.5229 -2.0861 43 1 7.8018 -6.9861 -1.6945 44 1 6.6923 -6.2340 -0.5192 45 1 10.1501 -6.8257 -0.1797 46 1 5.6600 -4.4916 -0.1736 47 1 6.7595 -3.0987 -0.0213 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074341121.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:50 Heat of formation + Delta-G solvation = 12.089597 kcal Electronic energy + Delta-G solvation = -30502.625462 eV Core-core repulsion = 26494.414635 eV Total energy + Delta-G solvation = -4008.210828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -42.43390 -39.97043 -38.45532 -35.92277 -34.70857 -33.52359 -32.50906 -31.67829 -31.49738 -29.62054 -29.24324 -27.70188 -26.65075 -24.64994 -23.97181 -22.91371 -21.82470 -21.29781 -21.05961 -19.45637 -18.58258 -17.70135 -16.97063 -16.48273 -15.80491 -15.67385 -15.52891 -15.20723 -15.02213 -14.52441 -14.31238 -14.02171 -13.79649 -13.54051 -13.31429 -13.27931 -13.08783 -12.80355 -12.68597 -12.53990 -12.45870 -12.31542 -12.10468 -12.05288 -11.44656 -11.10717 -11.04493 -10.83989 -10.67056 -10.41837 -10.30217 -10.26605 -10.06522 -10.02799 -9.71611 -9.67717 -9.06633 -8.67843 -8.48326 -8.27464 -6.80177 -5.90168 -3.36446 1.34966 2.57302 2.77858 3.02424 3.32388 3.39095 3.39937 3.42401 4.09992 4.23611 4.36979 4.56369 4.72914 4.82916 4.98188 5.04151 5.14515 5.19676 5.23903 5.27746 5.31404 5.49765 5.51434 5.66192 5.67635 5.71058 5.78101 5.89150 5.93903 5.97461 5.99901 6.06996 6.07773 6.22570 6.28461 6.36046 6.54557 6.55900 6.67043 6.83577 7.03402 7.08376 7.43705 7.55855 7.66485 7.81216 7.84397 8.24940 8.30138 9.04521 9.65165 10.22408 11.17201 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017640 B = 0.003470 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.928628 B = 8066.422934 C = 9073.872272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.228 3.772 3 N -0.493 5.493 4 C 0.084 3.916 5 C -0.080 4.080 6 C -0.076 4.076 7 C 0.589 3.411 8 O -0.522 6.522 9 N -0.602 5.602 10 C 0.105 3.895 11 C -0.120 4.120 12 C 0.081 3.919 13 H 0.053 0.947 14 O -0.389 6.389 15 C 0.039 3.961 16 C 0.137 3.863 17 N -0.584 5.584 18 C -0.256 4.256 19 H 0.069 0.931 20 C 0.007 3.993 21 N -0.902 5.902 22 Si 0.907 3.093 23 H -0.285 1.285 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.135 3.865 27 H 0.076 0.924 28 C 0.107 3.893 29 N -0.551 5.551 30 H 0.422 0.578 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.041 0.959 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.028 0.972 45 H 0.256 0.744 46 H 0.071 0.929 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.183 6.773 -2.295 19.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.036 4.036 3 N -0.214 5.214 4 C -0.050 4.050 5 C -0.138 4.138 6 C -0.192 4.192 7 C 0.376 3.624 8 O -0.397 6.397 9 N -0.335 5.335 10 C -0.018 4.018 11 C -0.159 4.159 12 C 0.021 3.979 13 H 0.071 0.929 14 O -0.309 6.309 15 C -0.039 4.039 16 C 0.012 3.988 17 N -0.306 5.306 18 C -0.385 4.385 19 H 0.087 0.913 20 C -0.193 4.193 21 N -0.545 5.545 22 Si 0.737 3.263 23 H -0.212 1.212 24 H -0.215 1.215 25 H -0.204 1.204 26 C 0.026 3.974 27 H 0.094 0.906 28 C -0.016 4.016 29 N -0.158 5.158 30 H 0.262 0.738 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.059 0.941 42 H 0.099 0.901 43 H 0.116 0.884 44 H 0.046 0.954 45 H 0.066 0.934 46 H 0.089 0.911 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.906 7.582 -1.785 19.527 hybrid contribution 1.244 -1.503 -0.338 1.980 sum -16.662 6.079 -2.123 17.863 Atomic orbital electron populations 1.20269 0.84371 1.04399 1.03904 1.23346 0.95720 0.81615 1.02886 1.70034 1.01641 1.28304 1.21417 1.20961 0.93086 0.90173 1.00729 1.20275 0.93290 0.97412 1.02822 1.20938 0.83986 0.95445 1.18828 1.16953 0.85613 0.79991 0.79884 1.90837 1.34940 1.70456 1.43479 1.48282 1.20983 1.21065 1.43188 1.21784 0.88933 1.00445 0.90667 1.21758 0.98911 0.98774 0.96418 1.22240 0.93625 0.84872 0.97164 0.92880 1.87693 1.38696 1.18854 1.85642 1.23349 0.91743 0.88682 1.00105 1.21492 0.94035 0.88774 0.94503 1.44296 1.03547 1.02366 1.80410 1.19169 0.81080 1.17452 1.20816 0.91334 1.25102 0.98128 1.00300 0.95731 1.69983 1.33435 1.29488 1.21630 0.86222 0.84345 0.77140 0.78621 1.21153 1.21481 1.20406 1.21601 0.90103 0.92947 0.92748 0.90558 1.22406 0.86705 0.91909 1.00565 1.43446 1.05892 1.10186 1.56261 0.73762 0.89801 0.88771 0.90479 0.91015 0.90858 0.89305 0.90775 0.90630 0.90364 0.90309 0.94065 0.90130 0.88383 0.95379 0.93386 0.91125 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.51 36.01 0.38 -0.03 16 2 C 0.23 2.40 8.12 -155.62 -1.26 1.14 16 3 N -0.49 -6.72 11.20 -6.85 -0.08 -6.80 16 4 C 0.08 1.23 7.14 -82.52 -0.59 0.64 16 5 C -0.08 -1.06 10.22 36.00 0.37 -0.70 16 6 C -0.08 -1.10 5.96 -82.14 -0.49 -1.59 16 7 C 0.59 10.09 7.48 -12.81 -0.10 10.00 16 8 O -0.52 -10.80 14.96 5.21 0.08 -10.72 16 9 N -0.60 -9.73 2.97 -174.24 -0.52 -10.25 16 10 C 0.11 1.32 5.42 -3.69 -0.02 1.30 16 11 C -0.12 -1.56 5.82 -26.90 -0.16 -1.72 16 12 C 0.08 1.37 2.73 -26.88 -0.07 1.30 16 13 H 0.05 0.94 8.11 -51.93 -0.42 0.52 16 14 O -0.39 -6.90 9.59 -35.23 -0.34 -7.23 16 15 C 0.04 0.72 6.97 37.28 0.26 0.98 16 16 C 0.14 3.11 4.91 -3.55 -0.02 3.09 16 17 N -0.58 -13.96 2.71 -163.86 -0.44 -14.40 16 18 C -0.26 -6.79 9.70 -15.06 -0.15 -6.94 16 19 H 0.07 1.80 7.87 -52.49 -0.41 1.39 16 20 C 0.01 0.18 5.02 -17.43 -0.09 0.09 16 21 N -0.90 -25.24 11.04 55.49 0.61 -24.63 16 22 Si 0.91 21.26 29.58 -169.99 -5.03 16.24 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 C 0.13 2.73 3.03 -67.07 -0.20 2.52 16 27 H 0.08 1.60 7.99 -51.93 -0.42 1.19 16 28 C 0.11 2.13 5.63 -3.69 -0.02 2.10 16 29 N -0.55 -5.87 4.75 -7.01 -0.03 -5.90 16 30 H 0.42 3.37 7.76 -40.82 -0.32 3.06 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 1.31 6.62 -51.93 -0.34 0.97 16 37 H 0.07 0.78 4.95 -51.93 -0.26 0.52 16 38 H 0.08 0.91 7.95 -51.93 -0.41 0.50 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.04 0.76 8.13 -51.93 -0.42 0.34 16 42 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.10 2.47 6.11 -51.93 -0.32 2.15 16 44 H 0.03 0.68 7.17 -51.93 -0.37 0.31 16 45 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 46 H 0.07 1.48 6.56 -51.93 -0.34 1.14 16 47 H 0.09 2.14 7.00 -51.93 -0.36 1.77 16 LS Contribution 366.43 15.07 5.52 5.52 Total: -1.00 -32.30 366.43 -9.29 -41.59 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -6.91 Total: 4.41 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: -2.16 Total: 12.18 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: -0.46 Total: -61.98 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.26 Total: -17.96 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.30 -9.29 -41.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074341121.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.680 kcal (2) G-P(sol) polarization free energy of solvation -32.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds