Wall clock time and date at job start Tue Mar 31 2020 18:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30847 * 125.42103 * 2 1 4 4 C 1.33323 * 109.68745 * 179.78136 * 3 2 1 5 5 C 1.50692 * 126.11014 * 180.27596 * 4 3 2 6 6 C 1.36663 * 107.78254 * 0.38225 * 4 3 2 7 7 C 1.46769 * 126.84284 * 179.89276 * 6 4 3 8 8 O 1.21679 * 120.00020 * 37.39459 * 7 6 4 9 9 N 1.34777 * 119.99747 * 217.39252 * 7 6 4 10 10 C 1.46986 * 120.72409 * 5.95474 * 9 7 6 11 11 C 1.53159 * 108.61838 * 125.53558 * 10 9 7 12 12 C 1.52515 * 109.79101 * 54.42213 * 11 10 9 13 13 H 1.09003 * 108.93103 * 180.33153 * 12 11 10 14 14 O 1.42688 * 110.62131 * 61.29461 * 12 11 10 15 15 C 1.43069 * 113.87470 * 174.65503 * 14 12 11 16 16 C 1.53231 * 109.45404 * 61.63738 * 15 14 12 17 17 N 1.47181 * 108.69203 * 308.41973 * 16 15 14 18 18 C 1.36936 * 121.22284 * 230.92599 * 17 16 15 19 19 H 1.08001 * 119.99516 * 152.66050 * 18 17 16 20 20 C 1.38813 * 120.00373 * 332.66501 * 18 17 16 21 21 N 1.31620 * 119.99662 * 346.14672 * 20 18 17 22 22 Si 1.86796 * 120.00174 * 166.15022 * 20 18 17 23 23 H 1.48504 * 109.47007 * 89.99743 * 22 20 18 24 24 H 1.48502 * 109.47242 * 209.99898 * 22 20 18 25 25 H 1.48499 * 109.47036 * 330.00183 * 22 20 18 26 26 C 1.47592 * 117.54927 * 50.95124 * 17 16 15 27 27 H 1.08997 * 110.31522 * 187.69388 * 26 17 16 28 28 C 1.46846 * 120.74857 * 185.66356 * 9 7 6 29 29 N 1.34496 * 125.41246 * 180.02562 * 2 1 3 30 30 H 0.96996 * 126.47812 * 0.02562 * 29 2 1 31 31 H 1.08998 * 109.46848 * 269.97514 * 1 2 3 32 32 H 1.09003 * 109.46356 * 29.97542 * 1 2 3 33 33 H 1.08996 * 109.46999 * 149.97218 * 1 2 3 34 34 H 1.09001 * 109.47179 * 270.12417 * 5 4 3 35 35 H 1.08997 * 109.47196 * 30.12451 * 5 4 3 36 36 H 1.09002 * 109.47193 * 150.12591 * 5 4 3 37 37 H 1.08994 * 109.64257 * 5.74427 * 10 9 7 38 38 H 1.08998 * 109.64352 * 245.32567 * 10 9 7 39 39 H 1.08997 * 109.41599 * 174.52263 * 11 10 9 40 40 H 1.08997 * 109.41321 * 294.32665 * 11 10 9 41 41 H 1.08997 * 109.47386 * 301.64397 * 15 14 12 42 42 H 1.08997 * 109.48214 * 181.63341 * 15 14 12 43 43 H 1.08991 * 109.60520 * 188.65438 * 16 15 14 44 44 H 1.09006 * 109.60126 * 68.17579 * 16 15 14 45 45 H 0.96998 * 120.00078 * 179.97438 * 21 20 18 46 46 H 1.09004 * 109.34241 * 114.31402 * 28 9 7 47 47 H 1.08993 * 109.53474 * 354.22199 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2654 1.0663 0.0000 4 6 3.5487 0.7048 0.0048 5 6 4.7336 1.6358 0.0123 6 6 3.5976 -0.6610 -0.0007 7 6 4.8029 -1.4985 -0.0005 8 8 5.7783 -1.1608 0.6438 9 7 4.8293 -2.6416 -0.7140 10 6 3.7122 -3.0000 -1.5996 11 6 4.2655 -3.2603 -3.0038 12 6 5.3725 -4.3073 -2.9367 13 1 5.7598 -4.4773 -3.9413 14 8 4.8657 -5.5430 -2.4346 15 6 5.8178 -6.6107 -2.4558 16 6 7.0091 -6.2499 -1.5621 17 7 7.5024 -4.9182 -1.9485 18 6 8.8283 -4.7020 -2.2142 19 1 9.1217 -3.9121 -2.8899 20 6 9.7951 -5.4979 -1.6153 21 7 9.4747 -6.2692 -0.5980 22 14 11.5506 -5.4742 -2.2530 23 1 12.3235 -4.4279 -1.5365 24 1 12.1793 -6.7996 -2.0216 25 1 11.5449 -5.1762 -3.7077 26 6 6.5157 -3.8244 -2.0386 27 1 6.9774 -2.9320 -2.4611 28 6 5.9772 -3.5534 -0.6289 29 7 2.2864 -1.0961 -0.0005 30 1 1.9849 -2.0181 -0.0013 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3632 0.8903 -0.5135 33 1 -0.3633 -0.8897 -0.5142 34 1 5.0225 1.8645 -1.0136 35 1 4.4679 2.5579 0.5291 36 1 5.5676 1.1583 0.5267 37 1 2.9949 -2.1802 -1.6346 38 1 3.2227 -3.8994 -1.2262 39 1 3.4638 -3.6213 -3.6480 40 1 4.6678 -2.3333 -3.4123 41 1 6.1644 -6.7684 -3.4771 42 1 5.3494 -7.5229 -2.0861 43 1 7.8018 -6.9861 -1.6945 44 1 6.6923 -6.2340 -0.5192 45 1 10.1501 -6.8257 -0.1797 46 1 5.6600 -4.4916 -0.1736 47 1 6.7595 -3.0987 -0.0213 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074341121.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:49 Heat of formation + Delta-G solvation = -9.821920 kcal Electronic energy + Delta-G solvation = -30503.575617 eV Core-core repulsion = 26494.414635 eV Total energy + Delta-G solvation = -4009.160982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.41630 -41.38698 -39.91443 -37.31969 -36.47628 -34.51974 -33.72055 -33.23231 -32.85418 -31.10061 -30.07395 -29.39650 -27.89317 -25.89120 -25.70779 -24.50229 -23.11051 -22.52833 -22.12596 -20.66822 -19.96598 -19.05457 -18.72538 -17.63987 -17.17887 -17.02151 -16.96659 -16.75834 -16.27527 -16.16346 -15.61898 -15.52918 -14.98746 -14.88413 -14.73947 -14.38129 -14.11767 -14.01072 -13.98797 -13.84078 -13.54074 -13.30320 -13.17079 -13.07446 -13.01775 -12.87008 -12.67198 -12.51839 -12.32287 -12.12936 -11.90059 -11.80873 -11.49593 -11.27445 -11.04176 -10.91193 -10.78562 -10.55604 -9.88299 -9.38177 -8.72455 -7.94444 -5.43826 0.28375 1.42920 1.44444 1.53369 1.54802 1.67186 1.89336 2.25624 2.44495 2.83969 3.21111 3.27959 3.39869 3.49953 3.78268 3.85791 3.95737 4.06912 4.08729 4.11843 4.20400 4.36092 4.40536 4.52160 4.56918 4.58834 4.68906 4.70840 4.74502 4.78054 4.80461 4.85467 4.91342 4.96562 4.98482 5.03784 5.16267 5.17733 5.24945 5.35307 5.52391 5.54269 5.59290 6.23845 6.23985 6.31979 6.32605 6.88143 6.94750 7.03286 7.68594 8.22681 9.10032 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017640 B = 0.003470 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.928628 B = 8066.422934 C = 9073.872272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.252 3.748 3 N -0.522 5.522 4 C 0.075 3.925 5 C -0.079 4.079 6 C -0.097 4.097 7 C 0.589 3.411 8 O -0.571 6.571 9 N -0.598 5.598 10 C 0.105 3.895 11 C -0.113 4.113 12 C 0.087 3.913 13 H 0.051 0.949 14 O -0.381 6.381 15 C 0.052 3.948 16 C 0.144 3.856 17 N -0.602 5.602 18 C -0.267 4.267 19 H 0.065 0.935 20 C -0.044 4.044 21 N -0.931 5.931 22 Si 0.969 3.031 23 H -0.289 1.289 24 H -0.288 1.288 25 H -0.268 1.268 26 C 0.131 3.869 27 H 0.061 0.939 28 C 0.127 3.873 29 N -0.539 5.539 30 H 0.437 0.563 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.084 0.916 41 H 0.045 0.955 42 H 0.110 0.890 43 H 0.069 0.931 44 H 0.003 0.997 45 H 0.252 0.748 46 H 0.058 0.942 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.876 7.063 -3.972 23.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.013 4.013 3 N -0.244 5.244 4 C -0.058 4.058 5 C -0.137 4.137 6 C -0.213 4.213 7 C 0.377 3.623 8 O -0.450 6.450 9 N -0.331 5.331 10 C -0.017 4.017 11 C -0.152 4.152 12 C 0.028 3.972 13 H 0.069 0.931 14 O -0.300 6.300 15 C -0.026 4.026 16 C 0.019 3.981 17 N -0.325 5.325 18 C -0.397 4.397 19 H 0.083 0.917 20 C -0.240 4.240 21 N -0.576 5.576 22 Si 0.797 3.203 23 H -0.216 1.216 24 H -0.214 1.214 25 H -0.193 1.193 26 C 0.024 3.976 27 H 0.080 0.920 28 C 0.002 3.998 29 N -0.147 5.147 30 H 0.280 0.720 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.127 0.873 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.134 0.866 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.128 0.872 43 H 0.087 0.913 44 H 0.021 0.979 45 H 0.061 0.939 46 H 0.076 0.924 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -21.666 7.859 -3.498 23.311 hybrid contribution 2.296 -1.503 0.223 2.754 sum -19.369 6.356 -3.275 20.647 Atomic orbital electron populations 1.20564 0.80527 1.06331 1.05487 1.24311 0.97410 0.80584 0.98963 1.70085 1.01227 1.29790 1.23274 1.21182 0.93939 0.90441 1.00284 1.20244 0.92556 0.97654 1.03246 1.20364 0.84390 0.94897 1.21635 1.17322 0.86027 0.79944 0.78964 1.90809 1.37074 1.71638 1.45431 1.48236 1.20825 1.20275 1.43726 1.22068 0.87927 1.02142 0.89561 1.21796 0.98473 0.97576 0.97317 1.22228 0.93854 0.85539 0.95621 0.93105 1.87710 1.37910 1.18790 1.85597 1.23179 0.90298 0.89886 0.99207 1.21330 0.94861 0.87693 0.94228 1.44510 1.03506 1.03915 1.80574 1.19445 0.82725 1.17081 1.20455 0.91682 1.25817 1.01639 1.00419 0.96099 1.70136 1.34228 1.30383 1.22846 0.85256 0.79931 0.76706 0.78415 1.21591 1.21426 1.19287 1.21735 0.90694 0.91690 0.93522 0.92037 1.21824 0.87046 0.91512 0.99430 1.43336 1.04313 1.11179 1.55909 0.72042 0.88219 0.88056 0.87330 0.90107 0.89611 0.91561 0.87977 0.89187 0.86628 0.89733 0.93619 0.87184 0.91288 0.97912 0.93864 0.92384 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.51 71.24 0.75 0.28 16 2 C 0.25 4.41 8.12 138.20 1.12 5.53 16 3 N -0.52 -13.11 11.20 -175.57 -1.97 -15.08 16 4 C 0.08 2.14 7.14 41.96 0.30 2.44 16 5 C -0.08 -2.13 10.22 71.23 0.73 -1.40 16 6 C -0.10 -2.70 5.96 40.01 0.24 -2.46 16 7 C 0.59 20.56 7.48 86.47 0.65 21.21 16 8 O -0.57 -25.15 14.96 -4.28 -0.06 -25.21 16 9 N -0.60 -19.27 2.97 -823.40 -2.45 -21.72 16 10 C 0.10 2.30 5.42 86.34 0.47 2.77 16 11 C -0.11 -2.56 5.82 30.49 0.18 -2.38 16 12 C 0.09 2.81 2.73 30.50 0.08 2.89 16 13 H 0.05 1.70 8.11 -2.39 -0.02 1.68 16 14 O -0.38 -12.60 9.59 -148.98 -1.43 -14.03 16 15 C 0.05 1.85 6.97 72.06 0.50 2.35 16 16 C 0.14 6.73 4.91 86.33 0.42 7.16 16 17 N -0.60 -29.83 2.71 -672.34 -1.82 -31.65 16 18 C -0.27 -14.71 9.70 84.03 0.82 -13.89 16 19 H 0.07 3.54 7.87 -2.91 -0.02 3.51 16 20 C -0.04 -2.43 5.02 84.86 0.43 -2.00 16 21 N -0.93 -54.39 11.04 21.65 0.24 -54.15 16 22 Si 0.97 44.95 29.58 68.60 2.03 46.98 16 23 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 24 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 C 0.13 5.45 3.03 44.95 0.14 5.59 16 27 H 0.06 2.69 7.99 -2.39 -0.02 2.67 16 28 C 0.13 5.25 5.63 86.42 0.49 5.73 16 29 N -0.54 -9.83 4.75 -176.10 -0.84 -10.67 16 30 H 0.44 5.24 7.76 -92.71 -0.72 4.52 16 31 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 34 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.09 2.01 8.14 -2.39 -0.02 2.00 16 36 H 0.07 2.08 6.62 -2.39 -0.02 2.06 16 37 H 0.10 1.73 4.95 -2.39 -0.01 1.72 16 38 H 0.09 1.80 7.95 -2.39 -0.02 1.78 16 39 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.05 1.61 8.13 -2.39 -0.02 1.59 16 42 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 43 H 0.07 3.62 6.11 -2.39 -0.01 3.60 16 44 H 0.00 0.14 7.17 -2.38 -0.02 0.13 16 45 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 46 H 0.06 2.53 6.56 -2.38 -0.02 2.52 16 47 H 0.05 2.38 7.00 -2.39 -0.02 2.36 16 Total: -1.00 -75.71 366.43 1.29 -74.42 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.28 Total: 17.30 kcal Atomic # 6 Polarization: 26.51 SS G_CDS: 7.30 Total: 33.81 kcal Atomic # 7 Polarization: -126.43 SS G_CDS: -6.84 Total: -133.27 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -1.49 Total: -39.24 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -75.71 1.29 -74.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074341121.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.600 kcal (2) G-P(sol) polarization free energy of solvation -75.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds