Wall clock time and date at job start Tue Mar 31 2020 18:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30855 * 125.41751 * 2 1 4 4 C 1.33325 * 109.68613 * 180.02562 * 3 2 1 5 5 C 1.50695 * 126.10677 * 180.02562 * 4 3 2 6 6 C 1.36661 * 107.78375 * 359.97438 * 4 3 2 7 7 C 1.46770 * 126.84666 * 179.97438 * 6 4 3 8 8 O 1.21686 * 119.99572 * 321.34726 * 7 6 4 9 9 N 1.34767 * 120.00245 * 141.34717 * 7 6 4 10 10 C 1.46976 * 120.72516 * 5.69101 * 9 7 6 11 11 C 1.51057 * 108.67881 * 234.00085 * 10 9 7 12 12 C 1.52506 * 110.92854 * 306.36725 * 11 10 9 13 13 H 1.09003 * 108.40798 * 178.25539 * 12 11 10 14 14 O 1.42691 * 110.62480 * 297.63111 * 12 11 10 15 15 C 1.43076 * 113.87688 * 185.35058 * 14 12 11 16 16 C 1.53234 * 109.44212 * 298.35020 * 15 14 12 17 17 N 1.47171 * 108.69498 * 51.58951 * 16 15 14 18 18 C 1.36933 * 121.22789 * 129.02541 * 17 16 15 19 19 H 1.07994 * 120.00097 * 209.02791 * 18 17 16 20 20 C 1.38815 * 119.99780 * 29.03084 * 18 17 16 21 21 N 1.31614 * 120.00209 * 19.92791 * 20 18 17 22 22 Si 1.86803 * 119.99749 * 199.92780 * 20 18 17 23 23 H 1.48498 * 109.47120 * 60.00028 * 22 20 18 24 24 H 1.48501 * 109.47033 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47261 * 299.99971 * 22 20 18 26 26 C 1.47594 * 117.54704 * 309.04153 * 17 16 15 27 27 H 1.08996 * 110.31648 * 172.31985 * 26 17 16 28 28 C 1.46801 * 120.72061 * 185.70617 * 9 7 6 29 29 N 1.34502 * 125.41761 * 180.31662 * 2 1 3 30 30 H 0.96995 * 126.47228 * 359.97438 * 29 2 1 31 31 H 1.08995 * 109.47138 * 89.97618 * 1 2 3 32 32 H 1.09004 * 109.46927 * 209.97960 * 1 2 3 33 33 H 1.09001 * 109.46904 * 329.97562 * 1 2 3 34 34 H 1.09009 * 109.46978 * 269.99280 * 5 4 3 35 35 H 1.08999 * 109.47772 * 29.99656 * 5 4 3 36 36 H 1.09003 * 109.47207 * 150.00034 * 5 4 3 37 37 H 1.09008 * 109.63730 * 354.24446 * 10 9 7 38 38 H 1.08998 * 109.65074 * 114.86835 * 10 9 7 39 39 H 1.08998 * 109.71797 * 185.35883 * 11 10 9 40 40 H 1.09005 * 107.97357 * 66.24830 * 11 10 9 41 41 H 1.08995 * 109.47415 * 58.33672 * 15 14 12 42 42 H 1.08995 * 109.47693 * 178.35560 * 15 14 12 43 43 H 1.09001 * 109.59831 * 291.82015 * 16 15 14 44 44 H 1.09005 * 109.59614 * 171.34983 * 16 15 14 45 45 H 0.97008 * 119.99885 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.52154 * 5.78075 * 28 9 7 47 47 H 1.08994 * 109.52317 * 245.59335 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5487 0.7049 -0.0006 5 6 4.7335 1.6360 -0.0002 6 6 3.5976 -0.6608 -0.0004 7 6 4.8029 -1.4983 -0.0013 8 8 5.7715 -1.1697 -0.6605 9 7 4.8369 -2.6312 0.7278 10 6 3.6372 -3.1085 1.4300 11 6 3.9793 -3.3148 2.8868 12 6 5.1953 -4.2228 3.0376 13 1 5.4241 -4.3183 4.0990 14 8 4.9246 -5.5182 2.5040 15 6 5.9768 -6.4639 2.7175 16 6 7.2497 -5.9775 2.0166 17 7 7.5154 -4.5904 2.4304 18 6 8.7448 -4.2130 2.9006 19 1 8.8265 -3.4005 3.6074 20 6 9.8862 -4.8747 2.4688 21 7 9.8600 -5.5723 1.3531 22 14 11.4592 -4.7749 3.4713 23 1 11.2169 -5.3260 4.8288 24 1 12.5248 -5.5617 2.8000 25 1 11.8867 -3.3570 3.5818 26 6 6.4078 -3.6211 2.3202 27 1 6.6873 -2.6732 2.7799 28 6 6.0731 -3.4152 0.8383 29 7 2.2865 -1.0961 -0.0061 30 1 1.9850 -2.0180 -0.0108 31 1 -0.3633 0.0004 -1.0276 32 1 -0.3633 -0.8902 0.5135 33 1 -0.3633 0.8898 0.5142 34 1 5.0191 1.8612 -1.0279 35 1 4.4695 2.5600 0.5142 36 1 5.5693 1.1604 0.5131 37 1 2.8397 -2.3715 1.3354 38 1 3.3154 -4.0579 1.0020 39 1 3.1292 -3.7587 3.4049 40 1 4.1989 -2.3399 3.3221 41 1 6.1656 -6.5623 3.7864 42 1 5.6843 -7.4313 2.3094 43 1 7.1099 -6.0165 0.9363 44 1 8.0893 -6.6114 2.3020 45 1 10.6577 -6.0345 1.0512 46 1 6.8885 -2.8800 0.3516 47 1 5.9343 -4.3838 0.3582 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074341123.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:56 Heat of formation + Delta-G solvation = 16.667089 kcal Electronic energy + Delta-G solvation = -30532.375303 eV Core-core repulsion = 26524.362970 eV Total energy + Delta-G solvation = -4008.012333 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -42.46438 -40.00210 -38.45548 -36.02151 -34.69956 -33.55725 -32.52420 -31.73973 -31.50083 -29.72493 -29.25796 -27.69609 -26.68308 -24.66158 -23.99118 -22.93162 -21.85032 -21.28778 -21.13871 -19.45265 -18.59741 -17.65216 -16.95139 -16.58215 -15.83192 -15.67661 -15.54548 -15.19696 -15.03808 -14.54191 -14.28497 -14.03870 -13.85643 -13.59253 -13.32703 -13.28690 -13.09281 -12.79127 -12.68541 -12.57873 -12.44060 -12.32102 -12.15789 -12.03620 -11.44539 -11.14864 -11.06778 -10.79256 -10.70022 -10.41073 -10.34028 -10.30470 -10.08840 -9.99389 -9.75011 -9.67450 -9.08563 -8.66461 -8.49745 -8.26300 -6.80553 -5.92754 -3.37245 1.35834 2.57139 2.77329 3.00904 3.32807 3.38603 3.38848 3.41134 4.09517 4.21256 4.36553 4.52531 4.70992 4.79613 4.98610 5.05194 5.14249 5.18738 5.20604 5.25715 5.29139 5.50081 5.51308 5.65068 5.67286 5.70887 5.81320 5.88901 5.93117 5.96430 5.98791 6.02625 6.05454 6.20902 6.25474 6.33626 6.53432 6.54813 6.66867 6.83164 6.96477 7.06623 7.34378 7.55591 7.68187 7.78155 7.84071 8.23783 8.30011 9.02068 9.64087 10.23181 11.14962 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017305 B = 0.003515 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.602510 B = 7963.784032 C = 8981.854909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.227 3.773 3 N -0.492 5.492 4 C 0.083 3.917 5 C -0.071 4.071 6 C -0.075 4.075 7 C 0.588 3.412 8 O -0.520 6.520 9 N -0.600 5.600 10 C 0.101 3.899 11 C -0.122 4.122 12 C 0.082 3.918 13 H 0.054 0.946 14 O -0.388 6.388 15 C 0.040 3.960 16 C 0.140 3.860 17 N -0.580 5.580 18 C -0.264 4.264 19 H 0.068 0.932 20 C 0.012 3.988 21 N -0.894 5.894 22 Si 0.904 3.096 23 H -0.282 1.282 24 H -0.289 1.289 25 H -0.280 1.280 26 C 0.135 3.865 27 H 0.075 0.925 28 C 0.107 3.893 29 N -0.552 5.552 30 H 0.423 0.577 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.042 0.958 42 H 0.081 0.919 43 H 0.030 0.970 44 H 0.087 0.913 45 H 0.257 0.743 46 H 0.093 0.907 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.996 5.087 0.388 19.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.037 4.037 3 N -0.213 5.213 4 C -0.050 4.050 5 C -0.129 4.129 6 C -0.190 4.190 7 C 0.374 3.626 8 O -0.396 6.396 9 N -0.334 5.334 10 C -0.022 4.022 11 C -0.161 4.161 12 C 0.023 3.977 13 H 0.072 0.928 14 O -0.307 6.307 15 C -0.038 4.038 16 C 0.014 3.986 17 N -0.302 5.302 18 C -0.393 4.393 19 H 0.086 0.914 20 C -0.189 4.189 21 N -0.536 5.536 22 Si 0.733 3.267 23 H -0.209 1.209 24 H -0.215 1.215 25 H -0.206 1.206 26 C 0.026 3.974 27 H 0.093 0.907 28 C -0.016 4.016 29 N -0.162 5.162 30 H 0.265 0.735 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.099 0.901 43 H 0.049 0.951 44 H 0.105 0.895 45 H 0.067 0.933 46 H 0.111 0.889 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.674 5.898 -0.150 19.584 hybrid contribution 1.192 -1.429 0.553 1.941 sum -17.483 4.469 0.403 18.049 Atomic orbital electron populations 1.20268 0.84373 1.04414 1.03891 1.23366 0.95739 0.81668 1.02908 1.70031 1.01596 1.28298 1.21372 1.20949 0.93108 0.90128 1.00808 1.20150 0.92548 0.97029 1.03139 1.20987 0.83882 0.95458 1.18691 1.16950 0.85688 0.80060 0.79923 1.90861 1.35906 1.71002 1.41783 1.48253 1.12764 1.23742 1.48615 1.21524 0.87447 0.99730 0.93528 1.21398 0.98693 0.99740 0.96234 1.22202 0.94298 0.84036 0.97196 0.92784 1.87702 1.42425 1.20200 1.80403 1.23315 0.89620 0.91142 0.99685 1.21382 0.94368 0.86624 0.96214 1.44257 1.08135 1.02708 1.75147 1.19075 0.82430 1.18662 1.19161 0.91438 1.25107 0.97622 1.00601 0.95536 1.70056 1.28997 1.35354 1.19164 0.86354 0.82654 0.77916 0.79772 1.20881 1.21526 1.20622 1.21593 0.88907 0.94182 0.92728 0.90703 1.22390 0.84389 0.95008 0.99834 1.43658 1.05959 1.10129 1.56412 0.73526 0.89808 0.90485 0.88758 0.90484 0.90995 0.90543 0.90707 0.90518 0.90275 0.90518 0.93963 0.90059 0.95144 0.89487 0.93308 0.88901 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.51 36.01 0.38 -0.03 16 2 C 0.23 2.39 8.12 -155.61 -1.26 1.12 16 3 N -0.49 -6.74 11.20 -6.84 -0.08 -6.82 16 4 C 0.08 1.23 7.14 -82.52 -0.59 0.64 16 5 C -0.07 -0.95 9.86 36.00 0.36 -0.60 16 6 C -0.07 -1.08 6.21 -82.14 -0.51 -1.59 16 7 C 0.59 10.15 7.33 -12.82 -0.09 10.06 16 8 O -0.52 -10.89 15.75 5.20 0.08 -10.81 16 9 N -0.60 -9.78 2.96 -175.54 -0.52 -10.30 16 10 C 0.10 1.26 5.68 -4.76 -0.03 1.23 16 11 C -0.12 -1.57 5.67 -27.96 -0.16 -1.73 16 12 C 0.08 1.39 2.72 -26.89 -0.07 1.32 16 13 H 0.05 0.95 8.13 -51.93 -0.42 0.53 16 14 O -0.39 -6.84 9.72 -35.23 -0.34 -7.19 16 15 C 0.04 0.73 6.98 37.28 0.26 0.99 16 16 C 0.14 3.14 4.97 -3.55 -0.02 3.12 16 17 N -0.58 -13.84 2.72 -163.87 -0.45 -14.29 16 18 C -0.26 -7.00 9.64 -15.06 -0.15 -7.15 16 19 H 0.07 1.77 7.90 -52.49 -0.41 1.36 16 20 C 0.01 0.32 4.85 -17.43 -0.08 0.23 16 21 N -0.89 -25.13 11.56 55.49 0.64 -24.49 16 22 Si 0.90 21.16 29.60 -169.99 -5.03 16.13 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.13 2.72 2.97 -67.07 -0.20 2.52 16 27 H 0.07 1.57 7.99 -51.93 -0.42 1.16 16 28 C 0.11 2.13 5.66 -3.71 -0.02 2.11 16 29 N -0.55 -5.87 4.77 -7.01 -0.03 -5.91 16 30 H 0.42 3.31 7.16 -40.82 -0.29 3.01 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.10 7.65 -51.93 -0.40 0.70 16 37 H 0.08 0.76 4.02 -51.92 -0.21 0.55 16 38 H 0.08 0.93 7.99 -51.93 -0.42 0.51 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.03 0.73 7.26 -51.93 -0.38 0.36 16 44 H 0.09 2.16 6.46 -51.93 -0.34 1.82 16 45 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.09 2.17 7.03 -51.93 -0.37 1.80 16 47 H 0.07 1.47 6.72 -51.93 -0.35 1.12 16 LS Contribution 367.82 15.07 5.54 5.54 Total: -1.00 -32.59 367.82 -9.30 -41.89 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -6.93 Total: 3.98 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: -2.19 Total: 12.26 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: -0.43 Total: -61.81 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.26 Total: -17.99 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.59 -9.30 -41.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074341123.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.557 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds