Wall clock time and date at job start Tue Mar 31 2020 18:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30855 * 125.41751 * 2 1 4 4 C 1.33325 * 109.68613 * 180.02562 * 3 2 1 5 5 C 1.50695 * 126.10677 * 180.02562 * 4 3 2 6 6 C 1.36661 * 107.78375 * 359.97438 * 4 3 2 7 7 C 1.46770 * 126.84666 * 179.97438 * 6 4 3 8 8 O 1.21686 * 119.99572 * 321.34726 * 7 6 4 9 9 N 1.34767 * 120.00245 * 141.34717 * 7 6 4 10 10 C 1.46976 * 120.72516 * 5.69101 * 9 7 6 11 11 C 1.51057 * 108.67881 * 234.00085 * 10 9 7 12 12 C 1.52506 * 110.92854 * 306.36725 * 11 10 9 13 13 H 1.09003 * 108.40798 * 178.25539 * 12 11 10 14 14 O 1.42691 * 110.62480 * 297.63111 * 12 11 10 15 15 C 1.43076 * 113.87688 * 185.35058 * 14 12 11 16 16 C 1.53234 * 109.44212 * 298.35020 * 15 14 12 17 17 N 1.47171 * 108.69498 * 51.58951 * 16 15 14 18 18 C 1.36933 * 121.22789 * 129.02541 * 17 16 15 19 19 H 1.07994 * 120.00097 * 209.02791 * 18 17 16 20 20 C 1.38815 * 119.99780 * 29.03084 * 18 17 16 21 21 N 1.31614 * 120.00209 * 19.92791 * 20 18 17 22 22 Si 1.86803 * 119.99749 * 199.92780 * 20 18 17 23 23 H 1.48498 * 109.47120 * 60.00028 * 22 20 18 24 24 H 1.48501 * 109.47033 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47261 * 299.99971 * 22 20 18 26 26 C 1.47594 * 117.54704 * 309.04153 * 17 16 15 27 27 H 1.08996 * 110.31648 * 172.31985 * 26 17 16 28 28 C 1.46801 * 120.72061 * 185.70617 * 9 7 6 29 29 N 1.34502 * 125.41761 * 180.31662 * 2 1 3 30 30 H 0.96995 * 126.47228 * 359.97438 * 29 2 1 31 31 H 1.08995 * 109.47138 * 89.97618 * 1 2 3 32 32 H 1.09004 * 109.46927 * 209.97960 * 1 2 3 33 33 H 1.09001 * 109.46904 * 329.97562 * 1 2 3 34 34 H 1.09009 * 109.46978 * 269.99280 * 5 4 3 35 35 H 1.08999 * 109.47772 * 29.99656 * 5 4 3 36 36 H 1.09003 * 109.47207 * 150.00034 * 5 4 3 37 37 H 1.09008 * 109.63730 * 354.24446 * 10 9 7 38 38 H 1.08998 * 109.65074 * 114.86835 * 10 9 7 39 39 H 1.08998 * 109.71797 * 185.35883 * 11 10 9 40 40 H 1.09005 * 107.97357 * 66.24830 * 11 10 9 41 41 H 1.08995 * 109.47415 * 58.33672 * 15 14 12 42 42 H 1.08995 * 109.47693 * 178.35560 * 15 14 12 43 43 H 1.09001 * 109.59831 * 291.82015 * 16 15 14 44 44 H 1.09005 * 109.59614 * 171.34983 * 16 15 14 45 45 H 0.97008 * 119.99885 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.52154 * 5.78075 * 28 9 7 47 47 H 1.08994 * 109.52317 * 245.59335 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5487 0.7049 -0.0006 5 6 4.7335 1.6360 -0.0002 6 6 3.5976 -0.6608 -0.0004 7 6 4.8029 -1.4983 -0.0013 8 8 5.7715 -1.1697 -0.6605 9 7 4.8369 -2.6312 0.7278 10 6 3.6372 -3.1085 1.4300 11 6 3.9793 -3.3148 2.8868 12 6 5.1953 -4.2228 3.0376 13 1 5.4241 -4.3183 4.0990 14 8 4.9246 -5.5182 2.5040 15 6 5.9768 -6.4639 2.7175 16 6 7.2497 -5.9775 2.0166 17 7 7.5154 -4.5904 2.4304 18 6 8.7448 -4.2130 2.9006 19 1 8.8265 -3.4005 3.6074 20 6 9.8862 -4.8747 2.4688 21 7 9.8600 -5.5723 1.3531 22 14 11.4592 -4.7749 3.4713 23 1 11.2169 -5.3260 4.8288 24 1 12.5248 -5.5617 2.8000 25 1 11.8867 -3.3570 3.5818 26 6 6.4078 -3.6211 2.3202 27 1 6.6873 -2.6732 2.7799 28 6 6.0731 -3.4152 0.8383 29 7 2.2865 -1.0961 -0.0061 30 1 1.9850 -2.0180 -0.0108 31 1 -0.3633 0.0004 -1.0276 32 1 -0.3633 -0.8902 0.5135 33 1 -0.3633 0.8898 0.5142 34 1 5.0191 1.8612 -1.0279 35 1 4.4695 2.5600 0.5142 36 1 5.5693 1.1604 0.5131 37 1 2.8397 -2.3715 1.3354 38 1 3.3154 -4.0579 1.0020 39 1 3.1292 -3.7587 3.4049 40 1 4.1989 -2.3399 3.3221 41 1 6.1656 -6.5623 3.7864 42 1 5.6843 -7.4313 2.3094 43 1 7.1099 -6.0165 0.9363 44 1 8.0893 -6.6114 2.3020 45 1 10.6577 -6.0345 1.0512 46 1 6.8885 -2.8800 0.3516 47 1 5.9343 -4.3838 0.3582 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074341123.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:54 Heat of formation + Delta-G solvation = -5.613332 kcal Electronic energy + Delta-G solvation = -30533.341455 eV Core-core repulsion = 26524.362970 eV Total energy + Delta-G solvation = -4008.978484 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.45728 -41.41363 -39.91963 -37.41814 -36.46340 -34.57282 -33.72715 -33.28447 -32.89123 -31.20747 -30.09073 -29.38984 -27.93454 -25.90901 -25.72629 -24.51794 -23.12906 -22.54121 -22.21557 -20.65653 -19.98921 -19.03812 -18.68188 -17.74107 -17.16850 -17.02503 -17.00747 -16.78605 -16.28279 -16.20230 -15.57617 -15.52373 -15.08494 -14.91847 -14.77161 -14.40865 -14.15001 -14.04024 -13.94208 -13.80640 -13.59663 -13.32605 -13.20016 -13.15109 -13.00116 -12.82857 -12.69060 -12.48303 -12.31588 -12.17610 -11.93686 -11.85001 -11.47978 -11.26699 -11.05847 -10.91296 -10.79647 -10.53922 -9.91583 -9.38482 -8.73410 -7.97120 -5.45081 0.28430 1.43960 1.44322 1.51970 1.53933 1.63794 1.88341 2.23423 2.44238 2.82814 3.17419 3.26039 3.38261 3.47888 3.78151 3.80920 3.95528 4.06823 4.07399 4.09774 4.19985 4.35303 4.40555 4.50619 4.54833 4.58260 4.67717 4.70251 4.72402 4.77611 4.80604 4.83993 4.90049 4.93002 4.96314 5.02657 5.14141 5.17467 5.20977 5.33310 5.48895 5.50196 5.57775 6.22487 6.23317 6.29878 6.30514 6.86916 6.93411 7.01214 7.67058 8.23362 9.07692 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017305 B = 0.003515 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.602510 B = 7963.784032 C = 8981.854909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.251 3.749 3 N -0.521 5.521 4 C 0.074 3.926 5 C -0.070 4.070 6 C -0.096 4.096 7 C 0.587 3.413 8 O -0.570 6.570 9 N -0.598 5.598 10 C 0.100 3.900 11 C -0.115 4.115 12 C 0.088 3.912 13 H 0.054 0.946 14 O -0.380 6.380 15 C 0.053 3.947 16 C 0.146 3.854 17 N -0.598 5.598 18 C -0.275 4.275 19 H 0.064 0.936 20 C -0.038 4.038 21 N -0.926 5.926 22 Si 0.967 3.033 23 H -0.273 1.273 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.132 3.868 27 H 0.060 0.940 28 C 0.126 3.874 29 N -0.540 5.540 30 H 0.438 0.562 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.118 0.882 40 H 0.082 0.918 41 H 0.048 0.952 42 H 0.111 0.889 43 H 0.004 0.996 44 H 0.059 0.941 45 H 0.253 0.747 46 H 0.046 0.954 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.023 5.092 1.838 23.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.013 4.013 3 N -0.243 5.243 4 C -0.060 4.060 5 C -0.128 4.128 6 C -0.211 4.211 7 C 0.376 3.624 8 O -0.449 6.449 9 N -0.330 5.330 10 C -0.022 4.022 11 C -0.153 4.153 12 C 0.029 3.971 13 H 0.072 0.928 14 O -0.299 6.299 15 C -0.025 4.025 16 C 0.021 3.979 17 N -0.321 5.321 18 C -0.405 4.405 19 H 0.082 0.918 20 C -0.235 4.235 21 N -0.570 5.570 22 Si 0.794 3.206 23 H -0.198 1.198 24 H -0.219 1.219 25 H -0.204 1.204 26 C 0.024 3.976 27 H 0.078 0.922 28 C 0.001 3.999 29 N -0.151 5.151 30 H 0.283 0.717 31 H 0.119 0.881 32 H 0.128 0.872 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.124 0.876 38 H 0.108 0.892 39 H 0.137 0.863 40 H 0.100 0.900 41 H 0.067 0.933 42 H 0.129 0.871 43 H 0.022 0.978 44 H 0.077 0.923 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.773 5.883 1.331 23.558 hybrid contribution 2.343 -1.341 0.054 2.700 sum -20.430 4.542 1.386 20.974 Atomic orbital electron populations 1.20574 0.80438 1.06375 1.05545 1.24348 0.97456 0.80605 0.98870 1.70081 1.01142 1.29830 1.23249 1.21155 0.93968 0.90394 1.00433 1.20124 0.92047 0.97588 1.03028 1.20400 0.84339 0.94891 1.21485 1.17325 0.86109 0.79998 0.79005 1.90828 1.38077 1.72157 1.43867 1.48220 1.12725 1.23237 1.48803 1.21828 0.86286 1.01137 0.92914 1.21427 0.97940 0.99181 0.96794 1.22193 0.94474 0.84160 0.96302 0.92811 1.87719 1.41536 1.20228 1.80456 1.23157 0.87544 0.92244 0.99507 1.21245 0.95757 0.85829 0.95096 1.44481 1.08298 1.04060 1.75296 1.19360 0.83890 1.18329 1.18891 0.91783 1.25835 1.00493 1.00786 0.96428 1.70198 1.29471 1.36632 1.20693 0.85364 0.78947 0.77685 0.78569 1.19831 1.21851 1.20448 1.21724 0.89601 0.93316 0.92991 0.92171 1.21808 0.85022 0.93936 0.99093 1.43528 1.04308 1.11158 1.56080 0.71722 0.88127 0.87239 0.88088 0.90638 0.89336 0.92307 0.87649 0.89249 0.86340 0.89957 0.93342 0.87078 0.97814 0.92293 0.93809 0.93540 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.51 71.24 0.75 0.29 16 2 C 0.25 4.39 8.12 138.20 1.12 5.51 16 3 N -0.52 -13.18 11.20 -175.57 -1.97 -15.14 16 4 C 0.07 2.14 7.14 41.96 0.30 2.44 16 5 C -0.07 -1.93 9.86 71.23 0.70 -1.23 16 6 C -0.10 -2.68 6.21 40.01 0.25 -2.43 16 7 C 0.59 20.76 7.33 86.47 0.63 21.40 16 8 O -0.57 -25.46 15.75 -4.30 -0.07 -25.53 16 9 N -0.60 -19.49 2.96 -827.51 -2.45 -21.94 16 10 C 0.10 2.18 5.68 85.66 0.49 2.67 16 11 C -0.12 -2.56 5.67 29.80 0.17 -2.39 16 12 C 0.09 2.83 2.72 30.49 0.08 2.91 16 13 H 0.05 1.77 8.13 -2.39 -0.02 1.75 16 14 O -0.38 -12.53 9.72 -148.98 -1.45 -13.98 16 15 C 0.05 1.87 6.98 72.06 0.50 2.37 16 16 C 0.15 6.79 4.97 86.33 0.43 7.22 16 17 N -0.60 -29.64 2.72 -672.36 -1.83 -31.47 16 18 C -0.27 -15.13 9.64 84.03 0.81 -14.32 16 19 H 0.06 3.49 7.90 -2.91 -0.02 3.46 16 20 C -0.04 -2.13 4.85 84.86 0.41 -1.72 16 21 N -0.93 -54.54 11.56 21.65 0.25 -54.29 16 22 Si 0.97 44.75 29.60 68.60 2.03 46.78 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 25 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 26 C 0.13 5.47 2.97 44.95 0.13 5.60 16 27 H 0.06 2.64 7.99 -2.39 -0.02 2.62 16 28 C 0.13 5.30 5.66 86.43 0.49 5.78 16 29 N -0.54 -9.76 4.77 -176.10 -0.84 -10.61 16 30 H 0.44 4.99 7.16 -92.71 -0.66 4.33 16 31 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.11 0.07 8.14 -2.38 -0.02 0.05 16 33 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 35 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.06 1.79 7.65 -2.39 -0.02 1.78 16 37 H 0.11 1.69 4.02 -2.38 -0.01 1.68 16 38 H 0.09 1.81 7.99 -2.39 -0.02 1.79 16 39 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 41 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 43 H 0.00 0.19 7.26 -2.39 -0.02 0.18 16 44 H 0.06 3.05 6.46 -2.38 -0.02 3.03 16 45 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 46 H 0.05 2.36 7.03 -2.39 -0.02 2.34 16 47 H 0.06 2.46 6.72 -2.39 -0.02 2.45 16 Total: -1.00 -76.87 367.82 1.28 -75.58 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.34 Total: 16.50 kcal Atomic # 6 Polarization: 26.84 SS G_CDS: 7.27 Total: 34.11 kcal Atomic # 7 Polarization: -126.62 SS G_CDS: -6.84 Total: -133.45 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -1.52 Total: -39.51 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -76.87 1.28 -75.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074341123.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.968 kcal (2) G-P(sol) polarization free energy of solvation -76.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds