Wall clock time and date at job start Tue Mar 31 2020 18:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34123 * 125.99065 * 2 1 4 4 C 1.30498 * 109.25805 * 180.02562 * 3 2 1 5 5 N 1.35041 * 108.69613 * 359.76728 * 4 3 2 6 6 H 0.97001 * 126.39691 * 180.26684 * 5 4 3 7 7 C 1.34668 * 125.99019 * 180.02562 * 2 1 3 8 8 C 1.50703 * 126.58964 * 359.95456 * 7 2 1 9 9 C 1.50704 * 109.46863 * 85.00597 * 8 7 2 10 10 O 1.21274 * 120.00095 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99434 * 180.27551 * 9 8 7 12 12 C 1.46839 * 120.41272 * 359.44746 * 11 9 8 13 13 C 1.52910 * 109.49685 * 232.18582 * 12 11 9 14 14 C 1.52791 * 108.88746 * 306.41649 * 13 12 11 15 15 H 1.09008 * 108.94891 * 302.94617 * 14 13 12 16 16 O 1.42600 * 111.11708 * 182.42405 * 14 13 12 17 17 C 1.43148 * 113.63127 * 176.37363 * 16 14 13 18 18 C 1.53196 * 109.73589 * 61.68918 * 17 16 14 19 19 N 1.47349 * 108.79938 * 308.78191 * 18 17 16 20 20 C 1.36936 * 121.30277 * 230.25780 * 19 18 17 21 21 H 1.08009 * 120.00006 * 152.50446 * 20 19 18 22 22 C 1.38814 * 120.00347 * 332.50402 * 20 19 18 23 23 N 1.31615 * 119.99583 * 344.74344 * 22 20 19 24 24 Si 1.86799 * 120.00367 * 164.73911 * 22 20 19 25 25 H 1.48498 * 109.46980 * 59.99958 * 24 22 20 26 26 H 1.48497 * 109.47190 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46868 * 300.00653 * 24 22 20 28 28 C 1.46875 * 117.39531 * 50.24378 * 19 18 17 29 29 H 1.09000 * 109.65926 * 68.35602 * 28 19 18 30 30 C 1.47131 * 120.40403 * 179.72224 * 11 9 8 31 31 H 1.09005 * 109.46986 * 269.99677 * 1 2 3 32 32 H 1.08997 * 109.47048 * 29.99396 * 1 2 3 33 33 H 1.09002 * 109.46998 * 149.99637 * 1 2 3 34 34 H 1.08000 * 125.65188 * 180.02562 * 4 3 2 35 35 H 1.09001 * 109.47462 * 325.00411 * 8 7 2 36 36 H 1.09003 * 109.47293 * 205.00330 * 8 7 2 37 37 H 1.09001 * 109.50495 * 352.17709 * 12 11 9 38 38 H 1.09002 * 109.50527 * 112.31476 * 12 11 9 39 39 H 1.08998 * 109.65472 * 186.52793 * 13 12 11 40 40 H 1.08992 * 109.54074 * 66.23405 * 13 12 11 41 41 H 1.08999 * 109.42510 * 301.60793 * 17 16 14 42 42 H 1.08991 * 109.43049 * 181.77069 * 17 16 14 43 43 H 1.08996 * 109.58123 * 188.99012 * 18 17 16 44 44 H 1.08994 * 109.58029 * 68.57943 * 18 17 16 45 45 H 0.97007 * 119.99909 * 180.02562 * 23 22 20 46 46 H 1.08999 * 109.73126 * 246.44521 * 30 11 9 47 47 H 1.09003 * 109.72488 * 7.07097 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5449 0.7095 -0.0006 5 7 3.5912 -0.6401 0.0043 6 1 4.3913 -1.1886 0.0087 7 6 2.2984 -1.0896 -0.0005 8 6 1.8472 -2.5275 -0.0002 9 6 1.5779 -2.9698 -1.4155 10 8 1.7363 -2.1937 -2.3338 11 7 1.1553 -4.2260 -1.6600 12 6 0.9659 -5.1747 -0.5554 13 6 1.7262 -6.4668 -0.8563 14 6 1.2992 -6.9836 -2.2294 15 1 0.2186 -7.1263 -2.2335 16 8 1.9400 -8.2203 -2.5349 17 6 1.5158 -8.7953 -3.7753 18 6 1.8606 -7.8484 -4.9291 19 7 1.3448 -6.5052 -4.6114 20 6 0.5835 -5.8048 -5.5086 21 1 -0.1338 -5.0779 -5.1568 22 6 0.7336 -6.0289 -6.8703 23 7 1.7898 -6.6737 -7.3185 24 14 -0.5634 -5.4154 -8.0664 25 1 -0.6793 -3.9390 -7.9565 26 1 -0.1713 -5.7798 -9.4516 27 1 -1.8710 -6.0400 -7.7419 28 6 1.6789 -5.9471 -3.2945 29 1 2.7464 -5.7319 -3.2475 30 6 0.8838 -4.6654 -3.0376 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3633 0.8900 -0.5137 33 1 -0.3633 -0.8900 -0.5139 34 1 4.4004 1.3687 -0.0003 35 1 0.9356 -2.6222 0.5898 36 1 2.6274 -3.1531 0.4337 37 1 1.3446 -4.7379 0.3686 38 1 -0.0954 -5.3978 -0.4451 39 1 1.4949 -7.2137 -0.0969 40 1 2.7977 -6.2673 -0.8582 41 1 0.4384 -8.9583 -3.7496 42 1 2.0224 -9.7486 -3.9250 43 1 1.3987 -8.2091 -5.8481 44 1 2.9424 -7.8041 -5.0545 45 1 1.8949 -6.8300 -8.2701 46 1 -0.1814 -4.8629 -3.1577 47 1 1.1958 -3.8914 -3.7389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074392591.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:07 Heat of formation + Delta-G solvation = 9.893328 kcal Electronic energy + Delta-G solvation = -30091.357097 eV Core-core repulsion = 26083.051032 eV Total energy + Delta-G solvation = -4008.306065 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.18080 -40.13761 -38.57887 -36.11985 -34.76459 -33.15843 -32.95721 -31.74379 -31.43741 -30.02733 -28.94272 -27.13366 -26.04540 -24.84355 -23.97969 -22.20073 -21.81593 -21.39504 -19.95203 -19.68896 -18.92402 -17.75541 -17.26720 -16.81296 -15.82551 -15.65204 -15.37443 -15.13219 -14.92792 -14.83565 -14.43453 -14.02129 -13.82711 -13.60676 -13.26503 -13.11281 -12.94493 -12.85540 -12.80488 -12.73316 -12.57818 -12.18191 -12.14030 -11.90042 -11.39279 -11.04455 -10.97653 -10.88903 -10.63828 -10.31865 -10.27284 -10.02537 -10.01457 -9.94282 -9.67983 -9.62067 -9.04143 -8.56628 -8.41532 -8.25631 -6.77163 -5.87065 -3.32812 1.90371 2.72309 2.94391 3.07415 3.23656 3.35652 3.40844 3.42064 4.17737 4.39952 4.43741 4.56975 4.66166 4.77888 4.84263 5.11682 5.15760 5.20331 5.25227 5.27873 5.33712 5.34761 5.48204 5.63009 5.68027 5.68627 5.83808 5.87746 5.90681 5.98156 6.04316 6.09061 6.11751 6.19012 6.28057 6.40516 6.59279 6.64687 6.72208 6.81735 7.08001 7.29907 7.45943 7.54108 7.68169 7.83709 8.02329 8.28588 8.32129 9.06619 9.69950 10.27320 11.21112 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012886 B = 0.003557 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.392054 B = 7869.095869 C = 9239.819019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.020 3.980 3 N -0.493 5.493 4 C 0.187 3.813 5 N -0.563 5.563 6 H 0.418 0.582 7 C -0.005 4.005 8 C -0.064 4.064 9 C 0.510 3.490 10 O -0.523 6.523 11 N -0.612 5.612 12 C 0.111 3.889 13 C -0.126 4.126 14 C 0.078 3.922 15 H 0.053 0.947 16 O -0.390 6.390 17 C 0.039 3.961 18 C 0.143 3.857 19 N -0.588 5.588 20 C -0.261 4.261 21 H 0.072 0.928 22 C 0.008 3.992 23 N -0.902 5.902 24 Si 0.904 3.096 25 H -0.280 1.280 26 H -0.289 1.289 27 H -0.282 1.282 28 C 0.138 3.862 29 H 0.035 0.965 30 C 0.124 3.876 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.207 0.793 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.041 0.959 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.027 0.973 45 H 0.256 0.744 46 H 0.073 0.927 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.923 3.620 18.894 19.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.110 4.110 3 N -0.213 5.213 4 C -0.097 4.097 5 N -0.165 5.165 6 H 0.255 0.745 7 C -0.121 4.121 8 C -0.105 4.105 9 C 0.297 3.703 10 O -0.398 6.398 11 N -0.346 5.346 12 C -0.013 4.013 13 C -0.164 4.164 14 C 0.018 3.982 15 H 0.071 0.929 16 O -0.309 6.309 17 C -0.039 4.039 18 C 0.017 3.983 19 N -0.312 5.312 20 C -0.390 4.390 21 H 0.089 0.911 22 C -0.191 4.191 23 N -0.545 5.545 24 Si 0.733 3.267 25 H -0.206 1.206 26 H -0.215 1.215 27 H -0.209 1.209 28 C 0.030 3.970 29 H 0.053 0.947 30 C 0.002 3.998 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.224 0.776 35 H 0.133 0.867 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.059 0.941 42 H 0.099 0.901 43 H 0.113 0.887 44 H 0.045 0.955 45 H 0.066 0.934 46 H 0.091 0.909 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.854 4.775 18.297 18.929 hybrid contribution 0.179 -0.866 -1.008 1.341 sum 1.033 3.909 17.289 17.755 Atomic orbital electron populations 1.20032 0.87883 1.02991 1.01655 1.20407 0.96347 0.87785 1.06414 1.70153 1.00585 1.30689 1.19847 1.24840 0.97330 0.81854 1.05633 1.43116 1.07956 1.08722 1.56754 0.74459 1.20189 0.84118 0.95418 1.12341 1.20090 1.03698 0.90722 0.96021 1.20410 0.77374 0.81746 0.90812 1.90765 1.50892 1.52194 1.45988 1.48286 1.66677 1.11107 1.08557 1.21627 1.00747 0.89445 0.89445 1.21778 1.01267 0.96330 0.97050 1.22402 0.95943 0.85952 0.93932 0.92918 1.87734 1.66896 1.36377 1.39873 1.23338 0.98384 0.96794 0.85343 1.21432 0.97515 0.83711 0.95607 1.44023 1.60809 1.14170 1.12239 1.19092 1.13223 1.20395 0.86252 0.91068 1.25072 0.96790 1.00030 0.97227 1.70005 1.26158 1.44817 1.13531 0.86349 0.81267 0.78919 0.80171 1.20614 1.21512 1.20878 1.21286 0.96766 0.91222 0.87758 0.94743 1.21773 0.99840 0.97547 0.80602 0.91586 0.91082 0.91487 0.77649 0.86710 0.88296 0.89655 0.90956 0.90146 0.90981 0.94074 0.90055 0.88673 0.95451 0.93410 0.90909 0.88029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.13 36.01 0.36 -0.42 16 2 C 0.02 0.27 7.09 -82.85 -0.59 -0.32 16 3 N -0.49 -7.07 11.25 -10.88 -0.12 -7.19 16 4 C 0.19 2.04 13.04 -90.38 -1.18 0.86 16 5 N -0.56 -5.74 6.15 -10.30 -0.06 -5.81 16 6 H 0.42 2.95 8.96 -40.82 -0.37 2.58 16 7 C -0.01 -0.06 5.73 -81.60 -0.47 -0.53 16 8 C -0.06 -0.64 4.15 -29.03 -0.12 -0.76 16 9 C 0.51 7.55 7.69 -10.98 -0.08 7.47 16 10 O -0.52 -10.38 15.43 5.56 0.09 -10.29 16 11 N -0.61 -8.85 2.99 -172.96 -0.52 -9.37 16 12 C 0.11 1.14 6.29 -3.90 -0.02 1.12 16 13 C -0.13 -1.55 5.81 -26.88 -0.16 -1.71 16 14 C 0.08 1.33 2.47 -26.64 -0.07 1.27 16 15 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 16 O -0.39 -7.39 10.49 -35.23 -0.37 -7.76 16 17 C 0.04 0.75 6.96 37.26 0.26 1.01 16 18 C 0.14 3.35 5.42 -3.48 -0.02 3.34 16 19 N -0.59 -14.38 3.04 -164.36 -0.50 -14.88 16 20 C -0.26 -6.91 8.87 -15.06 -0.13 -7.05 16 21 H 0.07 1.84 6.28 -52.48 -0.33 1.51 16 22 C 0.01 0.22 4.99 -17.43 -0.09 0.14 16 23 N -0.90 -25.72 11.16 55.49 0.62 -25.10 16 24 Si 0.90 21.51 29.58 -169.99 -5.03 16.48 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 C 0.14 2.84 3.03 -67.53 -0.20 2.63 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 30 C 0.12 2.34 4.49 -3.70 -0.02 2.33 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.77 7.89 -51.93 -0.41 0.36 16 34 H 0.21 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.11 0.86 7.86 -51.93 -0.41 0.45 16 36 H 0.10 0.72 7.65 -51.93 -0.40 0.32 16 37 H 0.09 0.58 5.91 -51.93 -0.31 0.27 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.10 2.43 6.23 -51.93 -0.32 2.11 16 44 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 46 H 0.07 1.38 7.37 -51.93 -0.38 1.00 16 47 H 0.10 2.29 6.80 -51.93 -0.35 1.93 16 LS Contribution 370.30 15.07 5.58 5.58 Total: -1.00 -35.66 370.30 -9.90 -45.55 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -7.06 Total: 3.41 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: -2.52 Total: 9.38 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: -0.58 Total: -62.35 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.28 Total: -18.06 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.66 -9.90 -45.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074392591.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.448 kcal (2) G-P(sol) polarization free energy of solvation -35.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds