Wall clock time and date at job start Tue Mar 31 2020 18:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34123 * 125.99065 * 2 1 4 4 C 1.30498 * 109.25805 * 180.02562 * 3 2 1 5 5 N 1.35041 * 108.69613 * 359.76728 * 4 3 2 6 6 H 0.97001 * 126.39691 * 180.26684 * 5 4 3 7 7 C 1.34668 * 125.99019 * 180.02562 * 2 1 3 8 8 C 1.50703 * 126.58964 * 359.95456 * 7 2 1 9 9 C 1.50704 * 109.46863 * 85.00597 * 8 7 2 10 10 O 1.21274 * 120.00095 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99434 * 180.27551 * 9 8 7 12 12 C 1.46839 * 120.41272 * 359.44746 * 11 9 8 13 13 C 1.52910 * 109.49685 * 232.18582 * 12 11 9 14 14 C 1.52791 * 108.88746 * 306.41649 * 13 12 11 15 15 H 1.09008 * 108.94891 * 302.94617 * 14 13 12 16 16 O 1.42600 * 111.11708 * 182.42405 * 14 13 12 17 17 C 1.43148 * 113.63127 * 176.37363 * 16 14 13 18 18 C 1.53196 * 109.73589 * 61.68918 * 17 16 14 19 19 N 1.47349 * 108.79938 * 308.78191 * 18 17 16 20 20 C 1.36936 * 121.30277 * 230.25780 * 19 18 17 21 21 H 1.08009 * 120.00006 * 152.50446 * 20 19 18 22 22 C 1.38814 * 120.00347 * 332.50402 * 20 19 18 23 23 N 1.31615 * 119.99583 * 344.74344 * 22 20 19 24 24 Si 1.86799 * 120.00367 * 164.73911 * 22 20 19 25 25 H 1.48498 * 109.46980 * 59.99958 * 24 22 20 26 26 H 1.48497 * 109.47190 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46868 * 300.00653 * 24 22 20 28 28 C 1.46875 * 117.39531 * 50.24378 * 19 18 17 29 29 H 1.09000 * 109.65926 * 68.35602 * 28 19 18 30 30 C 1.47131 * 120.40403 * 179.72224 * 11 9 8 31 31 H 1.09005 * 109.46986 * 269.99677 * 1 2 3 32 32 H 1.08997 * 109.47048 * 29.99396 * 1 2 3 33 33 H 1.09002 * 109.46998 * 149.99637 * 1 2 3 34 34 H 1.08000 * 125.65188 * 180.02562 * 4 3 2 35 35 H 1.09001 * 109.47462 * 325.00411 * 8 7 2 36 36 H 1.09003 * 109.47293 * 205.00330 * 8 7 2 37 37 H 1.09001 * 109.50495 * 352.17709 * 12 11 9 38 38 H 1.09002 * 109.50527 * 112.31476 * 12 11 9 39 39 H 1.08998 * 109.65472 * 186.52793 * 13 12 11 40 40 H 1.08992 * 109.54074 * 66.23405 * 13 12 11 41 41 H 1.08999 * 109.42510 * 301.60793 * 17 16 14 42 42 H 1.08991 * 109.43049 * 181.77069 * 17 16 14 43 43 H 1.08996 * 109.58123 * 188.99012 * 18 17 16 44 44 H 1.08994 * 109.58029 * 68.57943 * 18 17 16 45 45 H 0.97007 * 119.99909 * 180.02562 * 23 22 20 46 46 H 1.08999 * 109.73126 * 246.44521 * 30 11 9 47 47 H 1.09003 * 109.72488 * 7.07097 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5449 0.7095 -0.0006 5 7 3.5912 -0.6401 0.0043 6 1 4.3913 -1.1886 0.0087 7 6 2.2984 -1.0896 -0.0005 8 6 1.8472 -2.5275 -0.0002 9 6 1.5779 -2.9698 -1.4155 10 8 1.7363 -2.1937 -2.3338 11 7 1.1553 -4.2260 -1.6600 12 6 0.9659 -5.1747 -0.5554 13 6 1.7262 -6.4668 -0.8563 14 6 1.2992 -6.9836 -2.2294 15 1 0.2186 -7.1263 -2.2335 16 8 1.9400 -8.2203 -2.5349 17 6 1.5158 -8.7953 -3.7753 18 6 1.8606 -7.8484 -4.9291 19 7 1.3448 -6.5052 -4.6114 20 6 0.5835 -5.8048 -5.5086 21 1 -0.1338 -5.0779 -5.1568 22 6 0.7336 -6.0289 -6.8703 23 7 1.7898 -6.6737 -7.3185 24 14 -0.5634 -5.4154 -8.0664 25 1 -0.6793 -3.9390 -7.9565 26 1 -0.1713 -5.7798 -9.4516 27 1 -1.8710 -6.0400 -7.7419 28 6 1.6789 -5.9471 -3.2945 29 1 2.7464 -5.7319 -3.2475 30 6 0.8838 -4.6654 -3.0376 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3633 0.8900 -0.5137 33 1 -0.3633 -0.8900 -0.5139 34 1 4.4004 1.3687 -0.0003 35 1 0.9356 -2.6222 0.5898 36 1 2.6274 -3.1531 0.4337 37 1 1.3446 -4.7379 0.3686 38 1 -0.0954 -5.3978 -0.4451 39 1 1.4949 -7.2137 -0.0969 40 1 2.7977 -6.2673 -0.8582 41 1 0.4384 -8.9583 -3.7496 42 1 2.0224 -9.7486 -3.9250 43 1 1.3987 -8.2091 -5.8481 44 1 2.9424 -7.8041 -5.0545 45 1 1.8949 -6.8300 -8.2701 46 1 -0.1814 -4.8629 -3.1577 47 1 1.1958 -3.8914 -3.7389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074392591.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:05 Heat of formation + Delta-G solvation = -15.622960 kcal Electronic energy + Delta-G solvation = -30092.463566 eV Core-core repulsion = 26083.051032 eV Total energy + Delta-G solvation = -4009.412534 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -43.03437 -41.42536 -40.00675 -37.42682 -36.55752 -34.05192 -34.00957 -33.27504 -32.91923 -31.47303 -29.97889 -28.81881 -27.18320 -26.14929 -25.45669 -23.70970 -22.95097 -22.53336 -21.47571 -20.82825 -19.97053 -18.78089 -18.54421 -18.37014 -17.21267 -17.07842 -16.68303 -16.60134 -16.25654 -15.92394 -15.75986 -15.52904 -15.24135 -14.93109 -14.70232 -14.52485 -14.27093 -13.97201 -13.82342 -13.68005 -13.61282 -13.32189 -13.10284 -13.03822 -12.96551 -12.81620 -12.69623 -12.40895 -12.30855 -12.09508 -11.92328 -11.73405 -11.25483 -10.98192 -10.92037 -10.76507 -10.71147 -10.53524 -9.68362 -9.13439 -8.76512 -7.94525 -5.43033 1.02252 1.42805 1.44087 1.50587 1.61462 1.93640 2.21254 2.34334 2.44989 2.83384 3.20933 3.43671 3.55604 3.69214 3.84604 3.91984 4.01342 4.08821 4.10418 4.18349 4.27568 4.40798 4.41713 4.46427 4.49595 4.51389 4.55891 4.61442 4.72629 4.84690 4.87033 4.87594 5.01293 5.03145 5.09857 5.12606 5.12792 5.27175 5.31943 5.44330 5.52237 5.59402 5.84661 6.23760 6.32948 6.42322 6.60572 7.02156 7.16365 7.18776 7.70121 8.24794 9.11456 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012886 B = 0.003557 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.392054 B = 7869.095869 C = 9239.819019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.013 4.013 3 N -0.539 5.539 4 C 0.190 3.810 5 N -0.556 5.556 6 H 0.433 0.567 7 C -0.015 4.015 8 C -0.051 4.051 9 C 0.507 3.493 10 O -0.585 6.585 11 N -0.609 5.609 12 C 0.107 3.893 13 C -0.118 4.118 14 C 0.080 3.920 15 H 0.057 0.943 16 O -0.392 6.392 17 C 0.053 3.947 18 C 0.147 3.853 19 N -0.607 5.607 20 C -0.263 4.263 21 H 0.073 0.927 22 C -0.046 4.046 23 N -0.935 5.935 24 Si 0.965 3.035 25 H -0.283 1.283 26 H -0.292 1.292 27 H -0.270 1.270 28 C 0.135 3.865 29 H 0.003 0.997 30 C 0.140 3.860 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.243 0.757 35 H 0.151 0.849 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.068 0.932 41 H 0.050 0.950 42 H 0.108 0.892 43 H 0.069 0.931 44 H -0.005 1.005 45 H 0.251 0.749 46 H 0.070 0.930 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.304 2.860 22.642 22.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.141 4.141 3 N -0.259 5.259 4 C -0.094 4.094 5 N -0.160 5.160 6 H 0.273 0.727 7 C -0.131 4.131 8 C -0.092 4.092 9 C 0.296 3.704 10 O -0.464 6.464 11 N -0.342 5.342 12 C -0.014 4.014 13 C -0.156 4.156 14 C 0.020 3.980 15 H 0.075 0.925 16 O -0.311 6.311 17 C -0.025 4.025 18 C 0.021 3.979 19 N -0.332 5.332 20 C -0.392 4.392 21 H 0.091 0.909 22 C -0.242 4.242 23 N -0.581 5.581 24 Si 0.792 3.208 25 H -0.209 1.209 26 H -0.218 1.218 27 H -0.196 1.196 28 C 0.028 3.972 29 H 0.020 0.980 30 C 0.016 3.984 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.258 0.742 35 H 0.168 0.832 36 H 0.156 0.844 37 H 0.155 0.845 38 H 0.112 0.888 39 H 0.134 0.866 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.126 0.874 43 H 0.087 0.913 44 H 0.013 0.987 45 H 0.060 0.940 46 H 0.088 0.912 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.234 3.977 22.118 22.474 hybrid contribution 0.453 -0.562 -2.169 2.286 sum 0.687 3.415 19.949 20.251 Atomic orbital electron populations 1.20042 0.87262 1.02138 1.02866 1.20845 0.97354 0.88486 1.07463 1.70119 1.02180 1.31858 1.21791 1.25576 0.97501 0.82644 1.03726 1.43151 1.08159 1.08765 1.55934 0.72720 1.20476 0.84561 0.96122 1.11961 1.20197 1.06580 0.89861 0.92539 1.21346 0.75738 0.80940 0.92376 1.90748 1.53403 1.53887 1.48384 1.48341 1.66246 1.12091 1.07556 1.22068 1.02259 0.87712 0.89390 1.21840 1.01322 0.97999 0.94434 1.22538 0.96203 0.83959 0.95274 0.92547 1.87745 1.67320 1.36947 1.39053 1.23155 0.99224 0.96441 0.83679 1.21293 0.95159 0.84643 0.96802 1.44329 1.60632 1.14766 1.13460 1.19398 1.13087 1.19849 0.86895 0.90913 1.25810 0.98620 1.00940 0.98820 1.70162 1.27929 1.46659 1.13318 0.85390 0.79429 0.78066 0.77893 1.20873 1.21809 1.19552 1.21453 0.95106 0.93407 0.87259 0.97979 1.21218 0.98988 0.95187 0.83004 0.89270 0.92557 0.91674 0.74152 0.83164 0.84366 0.84522 0.88782 0.86579 0.91352 0.93180 0.87358 0.91294 0.98705 0.93975 0.91160 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.46 10.13 71.24 0.72 -0.74 16 2 C -0.01 -0.34 7.09 41.39 0.29 -0.05 16 3 N -0.54 -15.14 11.25 -188.32 -2.12 -17.26 16 4 C 0.19 3.85 13.04 180.26 2.35 6.20 16 5 N -0.56 -10.16 6.15 -186.50 -1.15 -11.31 16 6 H 0.43 4.98 8.96 -92.71 -0.83 4.15 16 7 C -0.01 -0.33 5.73 40.95 0.23 -0.09 16 8 C -0.05 -0.82 4.15 29.10 0.12 -0.70 16 9 C 0.51 14.18 7.69 87.66 0.67 14.86 16 10 O -0.58 -23.72 15.43 -3.01 -0.05 -23.76 16 11 N -0.61 -16.42 2.99 -819.53 -2.45 -18.87 16 12 C 0.11 1.66 6.29 86.28 0.54 2.20 16 13 C -0.12 -2.39 5.81 30.49 0.18 -2.21 16 14 C 0.08 2.57 2.47 30.66 0.08 2.65 16 15 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 16 O -0.39 -14.09 10.49 -148.98 -1.56 -15.65 16 17 C 0.05 1.97 6.96 72.05 0.50 2.47 16 18 C 0.15 7.14 5.42 86.28 0.47 7.61 16 19 N -0.61 -30.76 3.04 -673.91 -2.05 -32.81 16 20 C -0.26 -14.44 8.87 84.03 0.75 -13.70 16 21 H 0.07 3.90 6.28 -2.91 -0.02 3.88 16 22 C -0.05 -2.60 4.99 84.86 0.42 -2.18 16 23 N -0.94 -55.84 11.16 21.65 0.24 -55.60 16 24 Si 0.96 45.56 29.58 68.60 2.03 47.59 16 25 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 26 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 27 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 28 C 0.13 5.66 3.03 45.05 0.14 5.79 16 29 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 30 C 0.14 5.38 4.49 86.26 0.39 5.77 16 31 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 1.43 7.89 -2.39 -0.02 1.41 16 34 H 0.24 2.63 8.06 -2.91 -0.02 2.61 16 35 H 0.15 1.38 7.86 -2.39 -0.02 1.36 16 36 H 0.14 1.16 7.65 -2.39 -0.02 1.15 16 37 H 0.14 0.83 5.91 -2.39 -0.01 0.81 16 38 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 43 H 0.07 3.69 6.23 -2.39 -0.01 3.68 16 44 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 45 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 46 H 0.07 2.70 7.37 -2.39 -0.02 2.69 16 47 H 0.05 2.59 6.80 -2.39 -0.02 2.58 16 Total: -1.00 -85.80 370.30 0.92 -84.88 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.16 Total: 14.90 kcal Atomic # 6 Polarization: 20.03 SS G_CDS: 7.85 Total: 27.88 kcal Atomic # 7 Polarization: -128.32 SS G_CDS: -7.52 Total: -135.84 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -1.61 Total: -39.41 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -85.80 0.92 -84.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074392591.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.257 kcal (2) G-P(sol) polarization free energy of solvation -85.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds