Wall clock time and date at job start Tue Mar 31 2020 18:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34124 * 125.99132 * 2 1 4 4 C 1.30504 * 109.25731 * 180.24545 * 3 2 1 5 5 N 1.35039 * 108.69675 * 359.75662 * 4 3 2 6 6 H 0.97004 * 126.39146 * 180.02562 * 5 4 3 7 7 C 1.34673 * 125.98860 * 179.82032 * 2 1 3 8 8 C 1.50697 * 126.58862 * 0.02562 * 7 2 1 9 9 C 1.50698 * 109.46788 * 84.71573 * 8 7 2 10 10 O 1.21281 * 120.00550 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00088 * 180.02562 * 9 8 7 12 12 C 1.46989 * 120.71930 * 359.97438 * 11 9 8 13 13 C 1.53163 * 108.61573 * 125.54594 * 12 11 9 14 14 C 1.52503 * 109.79383 * 54.42176 * 13 12 11 15 15 H 1.09003 * 108.93664 * 180.33297 * 14 13 12 16 16 O 1.42686 * 110.62606 * 60.62167 * 14 13 12 17 17 C 1.43079 * 113.86812 * 174.64402 * 16 14 13 18 18 C 1.53225 * 109.44879 * 61.64535 * 17 16 14 19 19 N 1.47176 * 108.70210 * 308.42295 * 18 17 16 20 20 C 1.36934 * 121.22487 * 230.96654 * 19 18 17 21 21 H 1.08003 * 120.00049 * 153.94380 * 20 19 18 22 22 C 1.38812 * 120.00000 * 333.93686 * 20 19 18 23 23 N 1.31624 * 119.99982 * 159.67040 * 22 20 19 24 24 Si 1.86806 * 120.00254 * 339.67460 * 22 20 19 25 25 H 1.48496 * 109.47056 * 91.97391 * 24 22 20 26 26 H 1.48494 * 109.47148 * 211.97223 * 24 22 20 27 27 H 1.48497 * 109.46686 * 331.97649 * 24 22 20 28 28 C 1.47497 * 117.02885 * 51.36907 * 19 18 17 29 29 H 1.09001 * 109.76065 * 186.93231 * 28 19 18 30 30 C 1.46845 * 120.75370 * 179.70652 * 11 9 8 31 31 H 1.09001 * 109.47063 * 270.18168 * 1 2 3 32 32 H 1.08998 * 109.46892 * 30.17505 * 1 2 3 33 33 H 1.08995 * 109.47014 * 150.17647 * 1 2 3 34 34 H 1.07995 * 125.64897 * 179.73197 * 4 3 2 35 35 H 1.08997 * 109.47491 * 324.71394 * 8 7 2 36 36 H 1.09003 * 109.46900 * 204.71129 * 8 7 2 37 37 H 1.09000 * 109.64249 * 5.75581 * 12 11 9 38 38 H 1.08998 * 109.64189 * 245.33721 * 12 11 9 39 39 H 1.09000 * 109.41643 * 174.52456 * 13 12 11 40 40 H 1.08997 * 109.41358 * 294.32142 * 13 12 11 41 41 H 1.08996 * 109.47508 * 181.63944 * 17 16 14 42 42 H 1.09005 * 109.47220 * 301.64570 * 17 16 14 43 43 H 1.08994 * 109.59954 * 68.19027 * 18 17 16 44 44 H 1.09008 * 109.59473 * 188.50619 * 18 17 16 45 45 H 0.96999 * 119.99826 * 180.02562 * 23 22 20 46 46 H 1.09000 * 109.34440 * 114.30572 * 30 11 9 47 47 H 1.08999 * 109.53382 * 354.22094 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5450 0.7095 -0.0053 5 7 3.5912 -0.6401 -0.0034 6 1 4.3913 -1.1886 -0.0060 7 6 2.2984 -1.0897 0.0034 8 6 1.8472 -2.5275 0.0074 9 6 1.5724 -2.9716 -1.4062 10 8 1.7273 -2.1967 -2.3263 11 7 1.1536 -4.2296 -1.6481 12 6 0.9601 -5.1817 -0.5450 13 6 -0.4652 -5.7370 -0.6228 14 6 -0.7159 -6.3238 -2.0079 15 1 -1.7347 -6.7091 -2.0497 16 8 0.1937 -7.3905 -2.2740 17 6 -0.0579 -8.0719 -3.5067 18 6 0.0926 -7.0893 -4.6728 19 7 -0.7291 -5.8999 -4.3967 20 6 -1.6156 -5.4191 -5.3230 21 1 -2.4784 -4.8540 -5.0022 22 6 -1.4054 -5.6577 -6.6742 23 7 -2.4078 -5.5664 -7.5223 24 14 0.3000 -6.1087 -7.2889 25 1 0.4466 -7.5863 -7.3022 26 1 0.4862 -5.5804 -8.6641 27 1 1.3227 -5.5179 -6.3888 28 6 -0.5467 -5.2487 -3.0859 29 1 -1.2920 -4.4637 -2.9576 30 6 0.8749 -4.6779 -3.0184 31 1 -0.3633 0.0033 1.0277 32 1 -0.3633 0.8884 -0.5165 33 1 -0.3633 -0.8915 -0.5111 34 1 4.4004 1.3686 -0.0107 35 1 0.9378 -2.6214 0.6009 36 1 2.6290 -3.1524 0.4391 37 1 1.1034 -4.6724 0.4080 38 1 1.6768 -5.9979 -0.6355 39 1 -0.5922 -6.5158 0.1292 40 1 -1.1777 -4.9338 -0.4351 41 1 0.6563 -8.8869 -3.6238 42 1 -1.0708 -8.4746 -3.4992 43 1 1.1379 -6.7966 -4.7717 44 1 -0.2435 -7.5626 -5.5954 45 1 -2.2610 -5.7335 -8.4665 46 1 1.5914 -5.4501 -3.2984 47 1 0.9616 -3.8339 -3.7026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074392592.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:12 Heat of formation + Delta-G solvation = 16.209747 kcal Electronic energy + Delta-G solvation = -30376.669864 eV Core-core repulsion = 26368.637699 eV Total energy + Delta-G solvation = -4008.032165 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.19856 -40.27872 -38.77662 -35.94932 -34.92532 -33.17339 -32.95314 -31.89067 -31.76494 -30.15465 -28.99873 -27.67363 -26.08405 -24.76004 -23.87952 -23.15445 -21.82922 -21.65183 -20.20427 -19.38698 -18.57633 -17.76413 -17.25021 -17.01750 -15.84848 -15.79200 -15.71237 -15.54711 -15.05581 -14.82149 -14.52561 -14.22215 -14.15996 -13.61098 -13.42732 -13.26254 -12.91270 -12.82348 -12.76078 -12.68472 -12.59672 -12.28412 -12.14762 -12.10843 -11.80328 -11.53452 -11.20565 -11.05534 -10.67082 -10.38655 -10.23054 -10.03146 -9.96457 -9.85954 -9.69350 -9.57796 -9.42956 -8.64269 -8.44388 -8.27003 -7.09152 -6.04635 -3.42700 1.88172 2.70388 2.93729 3.05501 3.21897 3.24406 3.43200 3.44568 4.06976 4.41292 4.42952 4.54769 4.59666 4.69902 4.78134 4.93279 5.00243 5.14794 5.18541 5.22654 5.27243 5.28495 5.43749 5.52917 5.56742 5.71306 5.74742 5.76288 5.79245 5.92391 5.92795 5.96124 6.00812 6.06580 6.09734 6.15428 6.31435 6.44910 6.48591 6.61817 6.69626 6.72768 7.27415 7.55500 7.58062 7.76217 8.00889 8.21004 8.30909 8.77095 9.58389 9.93577 11.10809 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014950 B = 0.003577 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.420015 B = 7826.487885 C = 8667.536938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.022 3.978 3 N -0.492 5.492 4 C 0.186 3.814 5 N -0.563 5.563 6 H 0.417 0.583 7 C -0.007 4.007 8 C -0.063 4.063 9 C 0.508 3.492 10 O -0.528 6.528 11 N -0.607 5.607 12 C 0.111 3.889 13 C -0.123 4.123 14 C 0.078 3.922 15 H 0.060 0.940 16 O -0.384 6.384 17 C 0.051 3.949 18 C 0.085 3.915 19 N -0.597 5.597 20 C -0.262 4.262 21 H 0.090 0.910 22 C 0.029 3.971 23 N -0.903 5.903 24 Si 0.881 3.119 25 H -0.288 1.288 26 H -0.301 1.301 27 H -0.270 1.270 28 C 0.138 3.862 29 H 0.085 0.915 30 C 0.103 3.897 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.207 0.793 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.052 0.948 43 H 0.034 0.966 44 H 0.082 0.918 45 H 0.265 0.735 46 H 0.065 0.935 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.303 1.224 20.184 22.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.107 4.107 3 N -0.212 5.212 4 C -0.098 4.098 5 N -0.167 5.167 6 H 0.254 0.746 7 C -0.122 4.122 8 C -0.104 4.104 9 C 0.295 3.705 10 O -0.404 6.404 11 N -0.341 5.341 12 C -0.012 4.012 13 C -0.162 4.162 14 C 0.019 3.981 15 H 0.078 0.922 16 O -0.304 6.304 17 C -0.027 4.027 18 C -0.040 4.040 19 N -0.321 5.321 20 C -0.389 4.389 21 H 0.107 0.893 22 C -0.171 4.171 23 N -0.545 5.545 24 Si 0.711 3.289 25 H -0.215 1.215 26 H -0.229 1.229 27 H -0.195 1.195 28 C 0.030 3.970 29 H 0.103 0.897 30 C -0.021 4.021 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.223 0.777 35 H 0.133 0.867 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.071 0.929 43 H 0.052 0.948 44 H 0.100 0.900 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.110 2.441 19.579 22.170 hybrid contribution 1.620 -1.382 -0.880 2.305 sum 11.730 1.059 18.699 22.099 Atomic orbital electron populations 1.20046 0.87769 1.03147 1.01712 1.20433 0.96405 0.87742 1.06121 1.70163 1.00565 1.30715 1.19758 1.24839 0.97354 0.81834 1.05732 1.43103 1.07905 1.08698 1.56950 0.74583 1.20204 0.84081 0.95454 1.12457 1.20072 1.03629 0.90635 0.96066 1.20438 0.77708 0.81583 0.90788 1.90757 1.51464 1.52258 1.45873 1.48235 1.66126 1.11059 1.08664 1.21684 0.97588 0.92806 0.89165 1.21805 0.97081 1.00705 0.96579 1.22287 0.93170 0.88692 0.93940 0.92240 1.87729 1.55507 1.47524 1.39596 1.23052 1.00689 0.94397 0.84603 1.22051 0.95111 0.88963 0.97865 1.44576 1.46261 1.26569 1.14658 1.18873 1.00888 1.33508 0.85674 0.89273 1.25253 0.97080 0.99098 0.95686 1.69809 1.29874 1.51486 1.03350 0.87011 0.86927 0.77214 0.77726 1.21532 1.22874 1.19508 1.21620 0.94890 0.93998 0.86539 0.89734 1.22269 0.98316 1.00106 0.81394 0.91546 0.91007 0.91378 0.77680 0.86660 0.88473 0.90227 0.90557 0.90114 0.90039 0.89663 0.92947 0.94837 0.89964 0.92547 0.91671 0.89161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.14 36.01 0.37 -0.46 16 2 C 0.02 0.31 7.09 -82.85 -0.59 -0.28 16 3 N -0.49 -7.03 11.25 -10.88 -0.12 -7.15 16 4 C 0.19 1.98 13.04 -90.38 -1.18 0.80 16 5 N -0.56 -5.52 6.15 -10.30 -0.06 -5.58 16 6 H 0.42 2.68 8.96 -40.82 -0.37 2.31 16 7 C -0.01 -0.08 5.73 -81.60 -0.47 -0.55 16 8 C -0.06 -0.61 4.16 -29.04 -0.12 -0.73 16 9 C 0.51 7.37 7.69 -10.99 -0.08 7.29 16 10 O -0.53 -10.30 15.45 5.56 0.09 -10.22 16 11 N -0.61 -8.58 2.97 -172.71 -0.51 -9.10 16 12 C 0.11 1.14 6.16 -3.69 -0.02 1.11 16 13 C -0.12 -1.35 5.83 -26.90 -0.16 -1.50 16 14 C 0.08 1.22 2.76 -26.89 -0.07 1.14 16 15 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 16 O -0.38 -6.23 9.51 -35.23 -0.33 -6.57 16 17 C 0.05 0.86 6.97 37.27 0.26 1.12 16 18 C 0.09 1.79 3.84 -3.56 -0.01 1.77 16 19 N -0.60 -13.67 2.52 -163.92 -0.41 -14.08 16 20 C -0.26 -7.14 10.16 -15.06 -0.15 -7.29 16 21 H 0.09 2.61 8.06 -52.48 -0.42 2.18 16 22 C 0.03 0.81 5.26 -17.43 -0.09 0.72 16 23 N -0.90 -27.29 13.97 55.49 0.78 -26.52 16 24 Si 0.88 22.12 24.31 -169.99 -4.13 17.98 16 25 H -0.29 -6.83 6.58 56.52 0.37 -6.46 16 26 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 27 H -0.27 -6.75 6.57 56.52 0.37 -6.38 16 28 C 0.14 2.61 3.01 -67.11 -0.20 2.41 16 29 H 0.08 1.68 7.99 -51.93 -0.41 1.26 16 30 C 0.10 1.89 5.61 -3.68 -0.02 1.87 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.82 7.89 -51.93 -0.41 0.41 16 34 H 0.21 1.29 8.06 -52.49 -0.42 0.86 16 35 H 0.12 0.87 7.61 -51.93 -0.40 0.48 16 36 H 0.10 0.67 7.93 -51.93 -0.41 0.25 16 37 H 0.08 0.53 5.95 -51.93 -0.31 0.23 16 38 H 0.08 0.81 7.94 -51.93 -0.41 0.40 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.03 0.71 5.93 -51.93 -0.31 0.40 16 44 H 0.08 1.86 4.58 -51.92 -0.24 1.63 16 45 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 46 H 0.07 1.25 6.52 -51.93 -0.34 0.91 16 47 H 0.09 1.97 7.00 -51.93 -0.36 1.60 16 LS Contribution 363.55 15.07 5.48 5.48 Total: -1.00 -36.35 363.55 -8.75 -45.10 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.97 Total: 3.23 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -2.55 Total: 7.42 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: -0.34 Total: -62.43 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.25 Total: -16.78 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.13 Total: 17.98 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.35 -8.75 -45.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074392592.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.312 kcal (2) G-P(sol) polarization free energy of solvation -36.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds