Wall clock time and date at job start Tue Mar 31 2020 18:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34124 * 125.99132 * 2 1 4 4 C 1.30504 * 109.25731 * 180.24545 * 3 2 1 5 5 N 1.35039 * 108.69675 * 359.75662 * 4 3 2 6 6 H 0.97004 * 126.39146 * 180.02562 * 5 4 3 7 7 C 1.34673 * 125.98860 * 179.82032 * 2 1 3 8 8 C 1.50697 * 126.58862 * 0.02562 * 7 2 1 9 9 C 1.50698 * 109.46788 * 84.71573 * 8 7 2 10 10 O 1.21281 * 120.00550 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00088 * 180.02562 * 9 8 7 12 12 C 1.46989 * 120.71930 * 359.97438 * 11 9 8 13 13 C 1.53163 * 108.61573 * 125.54594 * 12 11 9 14 14 C 1.52503 * 109.79383 * 54.42176 * 13 12 11 15 15 H 1.09003 * 108.93664 * 180.33297 * 14 13 12 16 16 O 1.42686 * 110.62606 * 60.62167 * 14 13 12 17 17 C 1.43079 * 113.86812 * 174.64402 * 16 14 13 18 18 C 1.53225 * 109.44879 * 61.64535 * 17 16 14 19 19 N 1.47176 * 108.70210 * 308.42295 * 18 17 16 20 20 C 1.36934 * 121.22487 * 230.96654 * 19 18 17 21 21 H 1.08003 * 120.00049 * 153.94380 * 20 19 18 22 22 C 1.38812 * 120.00000 * 333.93686 * 20 19 18 23 23 N 1.31624 * 119.99982 * 159.67040 * 22 20 19 24 24 Si 1.86806 * 120.00254 * 339.67460 * 22 20 19 25 25 H 1.48496 * 109.47056 * 91.97391 * 24 22 20 26 26 H 1.48494 * 109.47148 * 211.97223 * 24 22 20 27 27 H 1.48497 * 109.46686 * 331.97649 * 24 22 20 28 28 C 1.47497 * 117.02885 * 51.36907 * 19 18 17 29 29 H 1.09001 * 109.76065 * 186.93231 * 28 19 18 30 30 C 1.46845 * 120.75370 * 179.70652 * 11 9 8 31 31 H 1.09001 * 109.47063 * 270.18168 * 1 2 3 32 32 H 1.08998 * 109.46892 * 30.17505 * 1 2 3 33 33 H 1.08995 * 109.47014 * 150.17647 * 1 2 3 34 34 H 1.07995 * 125.64897 * 179.73197 * 4 3 2 35 35 H 1.08997 * 109.47491 * 324.71394 * 8 7 2 36 36 H 1.09003 * 109.46900 * 204.71129 * 8 7 2 37 37 H 1.09000 * 109.64249 * 5.75581 * 12 11 9 38 38 H 1.08998 * 109.64189 * 245.33721 * 12 11 9 39 39 H 1.09000 * 109.41643 * 174.52456 * 13 12 11 40 40 H 1.08997 * 109.41358 * 294.32142 * 13 12 11 41 41 H 1.08996 * 109.47508 * 181.63944 * 17 16 14 42 42 H 1.09005 * 109.47220 * 301.64570 * 17 16 14 43 43 H 1.08994 * 109.59954 * 68.19027 * 18 17 16 44 44 H 1.09008 * 109.59473 * 188.50619 * 18 17 16 45 45 H 0.96999 * 119.99826 * 180.02562 * 23 22 20 46 46 H 1.09000 * 109.34440 * 114.30572 * 30 11 9 47 47 H 1.08999 * 109.53382 * 354.22094 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5450 0.7095 -0.0053 5 7 3.5912 -0.6401 -0.0034 6 1 4.3913 -1.1886 -0.0060 7 6 2.2984 -1.0897 0.0034 8 6 1.8472 -2.5275 0.0074 9 6 1.5724 -2.9716 -1.4062 10 8 1.7273 -2.1967 -2.3263 11 7 1.1536 -4.2296 -1.6481 12 6 0.9601 -5.1817 -0.5450 13 6 -0.4652 -5.7370 -0.6228 14 6 -0.7159 -6.3238 -2.0079 15 1 -1.7347 -6.7091 -2.0497 16 8 0.1937 -7.3905 -2.2740 17 6 -0.0579 -8.0719 -3.5067 18 6 0.0926 -7.0893 -4.6728 19 7 -0.7291 -5.8999 -4.3967 20 6 -1.6156 -5.4191 -5.3230 21 1 -2.4784 -4.8540 -5.0022 22 6 -1.4054 -5.6577 -6.6742 23 7 -2.4078 -5.5664 -7.5223 24 14 0.3000 -6.1087 -7.2889 25 1 0.4466 -7.5863 -7.3022 26 1 0.4862 -5.5804 -8.6641 27 1 1.3227 -5.5179 -6.3888 28 6 -0.5467 -5.2487 -3.0859 29 1 -1.2920 -4.4637 -2.9576 30 6 0.8749 -4.6779 -3.0184 31 1 -0.3633 0.0033 1.0277 32 1 -0.3633 0.8884 -0.5165 33 1 -0.3633 -0.8915 -0.5111 34 1 4.4004 1.3686 -0.0107 35 1 0.9378 -2.6214 0.6009 36 1 2.6290 -3.1524 0.4391 37 1 1.1034 -4.6724 0.4080 38 1 1.6768 -5.9979 -0.6355 39 1 -0.5922 -6.5158 0.1292 40 1 -1.1777 -4.9338 -0.4351 41 1 0.6563 -8.8869 -3.6238 42 1 -1.0708 -8.4746 -3.4992 43 1 1.1379 -6.7966 -4.7717 44 1 -0.2435 -7.5626 -5.5954 45 1 -2.2610 -5.7335 -8.4665 46 1 1.5914 -5.4501 -3.2984 47 1 0.9616 -3.8339 -3.7026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074392592.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:11 Heat of formation + Delta-G solvation = -11.026504 kcal Electronic energy + Delta-G solvation = -30377.850916 eV Core-core repulsion = 26368.637699 eV Total energy + Delta-G solvation = -4009.213217 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.03707 -41.53996 -40.08224 -37.19484 -36.60017 -34.06054 -34.01799 -33.66017 -33.05705 -31.44140 -30.06761 -29.24903 -27.09248 -25.86174 -25.50630 -24.69943 -22.99539 -22.65755 -21.39961 -20.45448 -19.76097 -19.02323 -18.60192 -18.28676 -17.56978 -17.10849 -16.90536 -16.77661 -16.14978 -15.94722 -15.89804 -15.75155 -15.36309 -14.90116 -14.63589 -14.51402 -14.25524 -14.14352 -13.91817 -13.75040 -13.69634 -13.62221 -13.29502 -13.21610 -13.06622 -12.96589 -12.78431 -12.39232 -12.20034 -11.97654 -11.93341 -11.56788 -11.34467 -11.11221 -10.97447 -10.91983 -10.71532 -10.47708 -9.74273 -9.14124 -8.94336 -8.25864 -5.59117 1.01894 1.18661 1.34696 1.41297 1.62196 1.96956 2.21705 2.31039 2.34048 2.78684 2.97359 3.15086 3.55288 3.68707 3.82255 3.91492 3.99372 4.05134 4.10892 4.14665 4.20537 4.24404 4.34077 4.39385 4.41508 4.47215 4.52394 4.62505 4.65059 4.79255 4.82508 4.85576 4.87233 4.93791 5.01509 5.02515 5.09261 5.14256 5.26418 5.30555 5.46589 5.72170 5.83494 6.02998 6.23531 6.46958 6.61757 6.74741 7.16664 7.20172 7.46981 7.88087 8.93836 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014950 B = 0.003577 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.420015 B = 7826.487885 C = 8667.536938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.014 4.014 3 N -0.540 5.540 4 C 0.191 3.809 5 N -0.554 5.554 6 H 0.433 0.567 7 C -0.013 4.013 8 C -0.051 4.051 9 C 0.506 3.494 10 O -0.588 6.588 11 N -0.604 5.604 12 C 0.107 3.893 13 C -0.118 4.118 14 C 0.084 3.916 15 H 0.049 0.951 16 O -0.374 6.374 17 C 0.059 3.941 18 C 0.080 3.920 19 N -0.614 5.614 20 C -0.249 4.249 21 H 0.054 0.946 22 C -0.027 4.027 23 N -0.952 5.952 24 Si 0.942 3.058 25 H -0.261 1.261 26 H -0.311 1.311 27 H -0.272 1.272 28 C 0.134 3.866 29 H 0.063 0.937 30 C 0.119 3.881 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.244 0.756 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.131 0.869 38 H 0.083 0.917 39 H 0.115 0.885 40 H 0.092 0.908 41 H 0.122 0.878 42 H 0.050 0.950 43 H 0.033 0.967 44 H 0.063 0.937 45 H 0.264 0.736 46 H 0.059 0.941 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.845 -0.663 24.145 27.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.142 4.142 3 N -0.261 5.261 4 C -0.094 4.094 5 N -0.159 5.159 6 H 0.274 0.726 7 C -0.129 4.129 8 C -0.091 4.091 9 C 0.295 3.705 10 O -0.468 6.468 11 N -0.337 5.337 12 C -0.014 4.014 13 C -0.156 4.156 14 C 0.024 3.976 15 H 0.067 0.933 16 O -0.293 6.293 17 C -0.019 4.019 18 C -0.045 4.045 19 N -0.338 5.338 20 C -0.379 4.379 21 H 0.071 0.929 22 C -0.223 4.223 23 N -0.597 5.597 24 Si 0.771 3.229 25 H -0.187 1.187 26 H -0.240 1.240 27 H -0.197 1.197 28 C 0.027 3.973 29 H 0.081 0.919 30 C -0.007 4.007 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.260 0.740 35 H 0.164 0.836 36 H 0.159 0.841 37 H 0.149 0.851 38 H 0.101 0.899 39 H 0.134 0.866 40 H 0.111 0.889 41 H 0.140 0.860 42 H 0.069 0.931 43 H 0.051 0.949 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 12.691 0.493 23.628 26.825 hybrid contribution 0.797 -0.703 -2.055 2.314 sum 13.488 -0.210 21.573 25.443 Atomic orbital electron populations 1.20030 0.87581 1.01990 1.02798 1.20804 0.97201 0.88657 1.07576 1.70118 1.02277 1.31894 1.21805 1.25587 0.97432 0.82684 1.03651 1.43111 1.08057 1.08693 1.55993 0.72599 1.20459 0.84584 0.96060 1.11845 1.20174 1.06440 0.89827 0.92646 1.21334 0.76155 0.80726 0.92291 1.90743 1.53967 1.53877 1.48246 1.48270 1.65662 1.11975 1.07755 1.22071 0.97093 0.92678 0.89574 1.21880 0.97958 1.01887 0.93851 1.22315 0.92819 0.87181 0.95249 0.93285 1.87754 1.55522 1.47285 1.38741 1.22990 1.01852 0.93910 0.83129 1.22138 0.94277 0.88900 0.99188 1.44664 1.46064 1.27999 1.15118 1.18781 1.00530 1.31836 0.86724 0.92855 1.25831 1.00169 1.00375 0.95912 1.69935 1.31790 1.54441 1.03556 0.86010 0.82361 0.78389 0.76124 1.18738 1.24037 1.19741 1.21776 0.94737 0.94889 0.85948 0.91859 1.21683 0.97443 0.97896 0.83636 0.89275 0.92725 0.91931 0.74038 0.83581 0.84138 0.85137 0.89898 0.86628 0.88940 0.86036 0.93122 0.94877 0.91875 0.92731 0.92309 0.93808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.58 10.14 71.24 0.72 -0.85 16 2 C -0.01 -0.37 7.09 41.39 0.29 -0.08 16 3 N -0.54 -15.12 11.25 -188.32 -2.12 -17.24 16 4 C 0.19 3.70 13.04 180.26 2.35 6.05 16 5 N -0.55 -9.39 6.15 -186.50 -1.15 -10.53 16 6 H 0.43 4.11 8.96 -92.71 -0.83 3.28 16 7 C -0.01 -0.28 5.73 40.95 0.23 -0.05 16 8 C -0.05 -0.77 4.16 29.10 0.12 -0.65 16 9 C 0.51 13.71 7.69 87.66 0.67 14.38 16 10 O -0.59 -23.31 15.45 -3.03 -0.05 -23.36 16 11 N -0.60 -15.68 2.97 -818.72 -2.43 -18.11 16 12 C 0.11 1.63 6.16 86.34 0.53 2.16 16 13 C -0.12 -2.03 5.83 30.48 0.18 -1.85 16 14 C 0.08 2.41 2.76 30.49 0.08 2.49 16 15 H 0.05 1.53 8.12 -2.39 -0.02 1.51 16 16 O -0.37 -10.86 9.51 -148.98 -1.42 -12.28 16 17 C 0.06 1.85 6.97 72.06 0.50 2.35 16 18 C 0.08 3.27 3.84 86.33 0.33 3.61 16 19 N -0.61 -28.79 2.52 -672.54 -1.69 -30.48 16 20 C -0.25 -14.32 10.16 84.03 0.85 -13.46 16 21 H 0.05 3.36 8.06 -2.91 -0.02 3.34 16 22 C -0.03 -1.62 5.26 84.86 0.45 -1.17 16 23 N -0.95 -60.26 13.97 21.65 0.30 -59.95 16 24 Si 0.94 47.25 24.31 68.60 1.67 48.92 16 25 H -0.26 -11.88 6.58 99.48 0.65 -11.23 16 26 H -0.31 -16.04 7.11 99.48 0.71 -15.34 16 27 H -0.27 -13.56 6.57 99.48 0.65 -12.91 16 28 C 0.13 5.12 3.01 44.98 0.14 5.26 16 29 H 0.06 2.64 7.99 -2.39 -0.02 2.62 16 30 C 0.12 4.38 5.61 86.43 0.48 4.87 16 31 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.06 1.50 7.89 -2.39 -0.02 1.48 16 34 H 0.24 2.38 8.06 -2.91 -0.02 2.36 16 35 H 0.15 1.39 7.61 -2.39 -0.02 1.38 16 36 H 0.14 0.99 7.93 -2.39 -0.02 0.97 16 37 H 0.13 0.76 5.95 -2.39 -0.01 0.75 16 38 H 0.08 1.27 7.94 -2.39 -0.02 1.25 16 39 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 42 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 43 H 0.03 1.37 5.93 -2.39 -0.01 1.36 16 44 H 0.06 2.83 4.58 -2.38 -0.01 2.82 16 45 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 46 H 0.06 2.23 6.52 -2.39 -0.02 2.21 16 47 H 0.04 2.01 7.00 -2.39 -0.02 1.99 16 Total: -1.00 -87.86 363.55 1.13 -86.74 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.06 Total: 13.25 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: 7.95 Total: 23.05 kcal Atomic # 7 Polarization: -129.24 SS G_CDS: -7.09 Total: -136.33 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -1.46 Total: -35.64 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 1.67 Total: 48.92 kcal Total: -87.86 1.13 -86.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074392592.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.712 kcal (2) G-P(sol) polarization free energy of solvation -87.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds