Wall clock time and date at job start Tue Mar 31 2020 18:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34124 * 125.99227 * 2 1 4 4 C 1.30500 * 109.25706 * 180.24999 * 3 2 1 5 5 N 1.35044 * 108.70122 * 359.75441 * 4 3 2 6 6 H 0.96995 * 126.39988 * 179.97438 * 5 4 3 7 7 C 1.34675 * 125.98735 * 179.82710 * 2 1 3 8 8 C 1.50698 * 126.58884 * 0.02562 * 7 2 1 9 9 C 1.50694 * 109.47300 * 84.71376 * 8 7 2 10 10 O 1.21286 * 119.99995 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00205 * 179.97438 * 9 8 7 12 12 C 1.46988 * 120.72218 * 0.02562 * 11 9 8 13 13 C 1.53157 * 108.43611 * 234.52944 * 12 11 9 14 14 C 1.52510 * 109.79430 * 305.46029 * 13 12 11 15 15 H 1.09005 * 108.93259 * 179.01049 * 14 13 12 16 16 O 1.42687 * 110.61589 * 298.71342 * 14 13 12 17 17 C 1.43071 * 113.88172 * 185.33765 * 16 14 13 18 18 C 1.53231 * 109.44448 * 298.35517 * 17 16 14 19 19 N 1.47175 * 108.69127 * 51.59118 * 18 17 16 20 20 C 1.36941 * 121.22406 * 129.03844 * 19 18 17 21 21 H 1.07993 * 119.99711 * 206.16898 * 20 19 18 22 22 C 1.38814 * 119.99906 * 26.44888 * 20 19 18 23 23 N 1.31618 * 119.99806 * 16.51557 * 22 20 19 24 24 Si 1.86797 * 119.99765 * 196.51120 * 22 20 19 25 25 H 1.48497 * 109.47117 * 60.00394 * 24 22 20 26 26 H 1.48503 * 109.46723 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47418 * 300.00291 * 24 22 20 28 28 C 1.47590 * 117.54885 * 309.31012 * 19 18 17 29 29 H 1.09007 * 110.31360 * 172.03429 * 28 19 18 30 30 C 1.46796 * 120.72058 * 179.97438 * 11 9 8 31 31 H 1.08993 * 109.46930 * 270.18048 * 1 2 3 32 32 H 1.09006 * 109.46809 * 30.17630 * 1 2 3 33 33 H 1.08996 * 109.47537 * 150.17761 * 1 2 3 34 34 H 1.07998 * 125.65381 * 179.73036 * 4 3 2 35 35 H 1.09003 * 109.47144 * 324.71428 * 8 7 2 36 36 H 1.09003 * 109.46724 * 204.71581 * 8 7 2 37 37 H 1.08998 * 109.64431 * 114.84422 * 12 11 9 38 38 H 1.09004 * 109.63706 * 354.21010 * 12 11 9 39 39 H 1.09000 * 109.41700 * 185.36233 * 13 12 11 40 40 H 1.09004 * 109.41471 * 65.55675 * 13 12 11 41 41 H 1.08998 * 109.47161 * 178.36595 * 17 16 14 42 42 H 1.08998 * 109.48148 * 58.35308 * 17 16 14 43 43 H 1.08996 * 109.60428 * 291.82503 * 18 17 16 44 44 H 1.08997 * 109.73079 * 171.42680 * 18 17 16 45 45 H 0.97010 * 119.99832 * 179.97438 * 23 22 20 46 46 H 1.08996 * 109.52114 * 245.64422 * 30 11 9 47 47 H 1.08997 * 109.52033 * 5.83057 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5449 0.7094 -0.0054 5 7 3.5913 -0.6402 -0.0035 6 1 4.3913 -1.1887 -0.0068 7 6 2.2984 -1.0897 0.0033 8 6 1.8471 -2.5275 0.0071 9 6 1.5723 -2.9715 -1.4065 10 8 1.7281 -2.1968 -2.3266 11 7 1.1545 -4.2298 -1.6485 12 6 0.9610 -5.1820 -0.5455 13 6 1.7836 -6.4396 -0.8414 14 6 1.4122 -6.9883 -2.2151 15 1 2.0175 -7.8717 -2.4186 16 8 0.0332 -7.3529 -2.2544 17 6 -0.3633 -7.9887 -3.4732 18 6 -0.1493 -7.0244 -4.6446 19 7 1.2285 -6.5102 -4.5866 20 6 2.0485 -6.5519 -5.6826 21 1 3.1203 -6.5827 -5.5542 22 6 1.5021 -6.5487 -6.9587 23 7 0.2504 -6.1834 -7.1377 24 14 2.5435 -7.0625 -8.4219 25 1 3.0062 -8.4609 -8.2333 26 1 1.7327 -6.9719 -9.6627 27 1 3.7196 -6.1627 -8.5328 28 6 1.6959 -5.9537 -3.3021 29 1 2.7637 -5.7395 -3.3487 30 6 0.8816 -4.6789 -3.0192 31 1 -0.3633 0.0032 1.0276 32 1 -0.3633 0.8885 -0.5166 33 1 -0.3634 -0.8915 -0.5110 34 1 4.4005 1.3685 -0.0108 35 1 0.9377 -2.6214 0.6007 36 1 2.6289 -3.1525 0.4388 37 1 -0.0942 -5.4441 -0.4685 38 1 1.2997 -4.7341 0.3888 39 1 1.5779 -7.1941 -0.0821 40 1 2.8447 -6.1906 -0.8255 41 1 -1.4170 -8.2613 -3.4147 42 1 0.2362 -8.8860 -3.6269 43 1 -0.8525 -6.1951 -4.5688 44 1 -0.3040 -7.5500 -5.5869 45 1 -0.1314 -6.1808 -8.0295 46 1 -0.1813 -4.8946 -3.1270 47 1 1.1688 -3.8972 -3.7224 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074392593.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:17 Heat of formation + Delta-G solvation = 9.987858 kcal Electronic energy + Delta-G solvation = -30209.570189 eV Core-core repulsion = 26201.268223 eV Total energy + Delta-G solvation = -4008.301966 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.14450 -40.09451 -38.56612 -35.77215 -34.68468 -33.12720 -32.87659 -31.74341 -31.51239 -29.70993 -28.87065 -27.39562 -26.00678 -24.59358 -23.84544 -22.83106 -21.77923 -21.49469 -20.06699 -19.27624 -18.32615 -17.70688 -17.18609 -16.87461 -15.70107 -15.55850 -15.46332 -15.13123 -14.93433 -14.77184 -14.49454 -14.12570 -13.83641 -13.52547 -13.27611 -13.12131 -12.82418 -12.77774 -12.73958 -12.52475 -12.34064 -12.15659 -12.09840 -11.93152 -11.40479 -11.10445 -11.00512 -10.80109 -10.64575 -10.30837 -10.22897 -10.03042 -9.98741 -9.90175 -9.68269 -9.53431 -9.04877 -8.63293 -8.27049 -8.21768 -6.79851 -5.89500 -3.33490 1.94123 2.82293 3.00689 3.10724 3.31963 3.35359 3.38926 3.40611 4.26522 4.37865 4.47614 4.64096 4.72382 4.82577 4.94805 5.07936 5.20521 5.25773 5.26538 5.31369 5.31891 5.39294 5.58863 5.70758 5.71772 5.72928 5.95028 5.95754 5.99096 6.01896 6.03914 6.10667 6.14891 6.24615 6.31253 6.38953 6.62910 6.70528 6.75217 6.91671 7.04822 7.33025 7.45019 7.66538 7.70764 7.83845 8.05292 8.26568 8.43653 9.05100 9.66728 10.23755 11.18153 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014220 B = 0.003374 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.520452 B = 8296.136757 C = 9347.673184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.019 3.981 3 N -0.493 5.493 4 C 0.186 3.814 5 N -0.563 5.563 6 H 0.417 0.583 7 C -0.004 4.004 8 C -0.064 4.064 9 C 0.507 3.493 10 O -0.529 6.529 11 N -0.606 5.606 12 C 0.111 3.889 13 C -0.122 4.122 14 C 0.080 3.920 15 H 0.051 0.949 16 O -0.387 6.387 17 C 0.039 3.961 18 C 0.137 3.863 19 N -0.584 5.584 20 C -0.258 4.258 21 H 0.068 0.932 22 C 0.007 3.993 23 N -0.899 5.899 24 Si 0.906 3.094 25 H -0.283 1.283 26 H -0.289 1.289 27 H -0.282 1.282 28 C 0.135 3.865 29 H 0.073 0.927 30 C 0.107 3.893 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.207 0.793 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.041 0.959 43 H 0.029 0.971 44 H 0.096 0.904 45 H 0.257 0.743 46 H 0.069 0.931 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.239 2.669 18.569 19.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.110 4.110 3 N -0.213 5.213 4 C -0.098 4.098 5 N -0.166 5.166 6 H 0.255 0.745 7 C -0.119 4.119 8 C -0.105 4.105 9 C 0.293 3.707 10 O -0.405 6.405 11 N -0.341 5.341 12 C -0.012 4.012 13 C -0.161 4.161 14 C 0.021 3.979 15 H 0.069 0.931 16 O -0.306 6.306 17 C -0.038 4.038 18 C 0.012 3.988 19 N -0.307 5.307 20 C -0.388 4.388 21 H 0.086 0.914 22 C -0.192 4.192 23 N -0.543 5.543 24 Si 0.736 3.264 25 H -0.209 1.209 26 H -0.215 1.215 27 H -0.208 1.208 28 C 0.026 3.974 29 H 0.091 0.909 30 C -0.017 4.017 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.223 0.777 35 H 0.132 0.868 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.059 0.941 43 H 0.047 0.953 44 H 0.114 0.886 45 H 0.067 0.933 46 H 0.087 0.913 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.775 3.964 17.992 18.631 hybrid contribution 1.469 -1.441 -1.176 2.371 sum 4.244 2.523 16.815 17.525 Atomic orbital electron populations 1.20030 0.87889 1.03002 1.01642 1.20405 0.96347 0.87787 1.06443 1.70148 1.00580 1.30713 1.19833 1.24828 0.97325 0.81863 1.05783 1.43105 1.07941 1.08694 1.56832 0.74519 1.20224 0.84070 0.95494 1.12134 1.20088 1.03551 0.90569 0.96310 1.20402 0.77757 0.81858 0.90646 1.90755 1.51546 1.52387 1.45840 1.48313 1.66118 1.10725 1.08903 1.21675 1.01189 0.89432 0.88908 1.21791 0.99977 0.97327 0.97017 1.22116 0.83824 0.97507 0.94466 0.93101 1.87711 1.25288 1.79530 1.38080 1.23330 0.98710 0.95850 0.85944 1.21472 0.85709 0.94967 0.96684 1.44281 1.11747 1.67919 1.06727 1.19119 0.89569 1.46193 0.83875 0.91435 1.25053 0.96693 0.99804 0.97673 1.70008 1.13666 1.48840 1.21752 0.86314 0.79557 0.78708 0.81862 1.20945 1.21478 1.20786 1.21631 0.97523 0.90769 0.87492 0.90903 1.22439 1.00802 0.98039 0.80397 0.91609 0.91101 0.91465 0.77688 0.86840 0.88461 0.90377 0.90448 0.90350 0.90607 0.90076 0.94110 0.95301 0.88595 0.93332 0.91285 0.89352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.14 36.01 0.37 -0.46 16 2 C 0.02 0.27 7.09 -82.85 -0.59 -0.31 16 3 N -0.49 -7.22 11.25 -10.87 -0.12 -7.35 16 4 C 0.19 2.07 13.04 -90.37 -1.18 0.89 16 5 N -0.56 -5.86 6.15 -10.30 -0.06 -5.93 16 6 H 0.42 2.98 8.96 -40.82 -0.37 2.62 16 7 C 0.00 -0.05 5.73 -81.60 -0.47 -0.51 16 8 C -0.06 -0.68 4.16 -29.04 -0.12 -0.80 16 9 C 0.51 7.85 7.69 -10.99 -0.08 7.76 16 10 O -0.53 -10.86 15.45 5.55 0.09 -10.77 16 11 N -0.61 -9.26 2.96 -172.41 -0.51 -9.77 16 12 C 0.11 1.27 6.18 -3.69 -0.02 1.24 16 13 C -0.12 -1.46 5.82 -26.90 -0.16 -1.62 16 14 C 0.08 1.34 2.71 -27.12 -0.07 1.27 16 15 H 0.05 0.89 8.12 -51.93 -0.42 0.46 16 16 O -0.39 -6.84 9.59 -35.23 -0.34 -7.18 16 17 C 0.04 0.73 6.98 37.28 0.26 0.99 16 18 C 0.14 3.13 4.94 -3.55 -0.02 3.11 16 19 N -0.58 -14.04 2.71 -163.80 -0.44 -14.48 16 20 C -0.26 -6.90 9.69 -15.06 -0.15 -7.04 16 21 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 22 C 0.01 0.20 4.96 -17.43 -0.09 0.11 16 23 N -0.90 -25.43 11.13 55.49 0.62 -24.81 16 24 Si 0.91 21.35 29.59 -169.99 -5.03 16.32 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.13 2.70 3.03 -67.01 -0.20 2.50 16 29 H 0.07 1.51 7.99 -51.92 -0.42 1.09 16 30 C 0.11 2.12 5.64 -3.41 -0.02 2.10 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.83 7.89 -51.93 -0.41 0.42 16 34 H 0.21 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.11 0.95 7.83 -51.93 -0.41 0.54 16 36 H 0.10 0.74 7.71 -51.93 -0.40 0.34 16 37 H 0.08 0.93 7.94 -51.93 -0.41 0.52 16 38 H 0.08 0.60 5.95 -51.93 -0.31 0.29 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.03 0.71 7.17 -51.93 -0.37 0.33 16 44 H 0.10 2.43 6.12 -51.93 -0.32 2.11 16 45 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 46 H 0.07 1.47 6.56 -51.93 -0.34 1.13 16 47 H 0.09 2.09 7.00 -51.93 -0.36 1.72 16 LS Contribution 370.30 15.07 5.58 5.58 Total: -1.00 -34.91 370.30 -9.81 -44.72 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -7.04 Total: 4.46 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: -2.54 Total: 9.21 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: -0.52 Total: -62.34 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.25 Total: -17.95 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.91 -9.81 -44.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074392593.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.707 kcal (2) G-P(sol) polarization free energy of solvation -34.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds