Wall clock time and date at job start Tue Mar 31 2020 18:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34124 * 125.99227 * 2 1 4 4 C 1.30500 * 109.25706 * 180.24999 * 3 2 1 5 5 N 1.35044 * 108.70122 * 359.75441 * 4 3 2 6 6 H 0.96995 * 126.39988 * 179.97438 * 5 4 3 7 7 C 1.34675 * 125.98735 * 179.82710 * 2 1 3 8 8 C 1.50698 * 126.58884 * 0.02562 * 7 2 1 9 9 C 1.50694 * 109.47300 * 84.71376 * 8 7 2 10 10 O 1.21286 * 119.99995 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00205 * 179.97438 * 9 8 7 12 12 C 1.46988 * 120.72218 * 0.02562 * 11 9 8 13 13 C 1.53157 * 108.43611 * 234.52944 * 12 11 9 14 14 C 1.52510 * 109.79430 * 305.46029 * 13 12 11 15 15 H 1.09005 * 108.93259 * 179.01049 * 14 13 12 16 16 O 1.42687 * 110.61589 * 298.71342 * 14 13 12 17 17 C 1.43071 * 113.88172 * 185.33765 * 16 14 13 18 18 C 1.53231 * 109.44448 * 298.35517 * 17 16 14 19 19 N 1.47175 * 108.69127 * 51.59118 * 18 17 16 20 20 C 1.36941 * 121.22406 * 129.03844 * 19 18 17 21 21 H 1.07993 * 119.99711 * 206.16898 * 20 19 18 22 22 C 1.38814 * 119.99906 * 26.44888 * 20 19 18 23 23 N 1.31618 * 119.99806 * 16.51557 * 22 20 19 24 24 Si 1.86797 * 119.99765 * 196.51120 * 22 20 19 25 25 H 1.48497 * 109.47117 * 60.00394 * 24 22 20 26 26 H 1.48503 * 109.46723 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47418 * 300.00291 * 24 22 20 28 28 C 1.47590 * 117.54885 * 309.31012 * 19 18 17 29 29 H 1.09007 * 110.31360 * 172.03429 * 28 19 18 30 30 C 1.46796 * 120.72058 * 179.97438 * 11 9 8 31 31 H 1.08993 * 109.46930 * 270.18048 * 1 2 3 32 32 H 1.09006 * 109.46809 * 30.17630 * 1 2 3 33 33 H 1.08996 * 109.47537 * 150.17761 * 1 2 3 34 34 H 1.07998 * 125.65381 * 179.73036 * 4 3 2 35 35 H 1.09003 * 109.47144 * 324.71428 * 8 7 2 36 36 H 1.09003 * 109.46724 * 204.71581 * 8 7 2 37 37 H 1.08998 * 109.64431 * 114.84422 * 12 11 9 38 38 H 1.09004 * 109.63706 * 354.21010 * 12 11 9 39 39 H 1.09000 * 109.41700 * 185.36233 * 13 12 11 40 40 H 1.09004 * 109.41471 * 65.55675 * 13 12 11 41 41 H 1.08998 * 109.47161 * 178.36595 * 17 16 14 42 42 H 1.08998 * 109.48148 * 58.35308 * 17 16 14 43 43 H 1.08996 * 109.60428 * 291.82503 * 18 17 16 44 44 H 1.08997 * 109.73079 * 171.42680 * 18 17 16 45 45 H 0.97010 * 119.99832 * 179.97438 * 23 22 20 46 46 H 1.08996 * 109.52114 * 245.64422 * 30 11 9 47 47 H 1.08997 * 109.52033 * 5.83057 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5449 0.7094 -0.0054 5 7 3.5913 -0.6402 -0.0035 6 1 4.3913 -1.1887 -0.0068 7 6 2.2984 -1.0897 0.0033 8 6 1.8471 -2.5275 0.0071 9 6 1.5723 -2.9715 -1.4065 10 8 1.7281 -2.1968 -2.3266 11 7 1.1545 -4.2298 -1.6485 12 6 0.9610 -5.1820 -0.5455 13 6 1.7836 -6.4396 -0.8414 14 6 1.4122 -6.9883 -2.2151 15 1 2.0175 -7.8717 -2.4186 16 8 0.0332 -7.3529 -2.2544 17 6 -0.3633 -7.9887 -3.4732 18 6 -0.1493 -7.0244 -4.6446 19 7 1.2285 -6.5102 -4.5866 20 6 2.0485 -6.5519 -5.6826 21 1 3.1203 -6.5827 -5.5542 22 6 1.5021 -6.5487 -6.9587 23 7 0.2504 -6.1834 -7.1377 24 14 2.5435 -7.0625 -8.4219 25 1 3.0062 -8.4609 -8.2333 26 1 1.7327 -6.9719 -9.6627 27 1 3.7196 -6.1627 -8.5328 28 6 1.6959 -5.9537 -3.3021 29 1 2.7637 -5.7395 -3.3487 30 6 0.8816 -4.6789 -3.0192 31 1 -0.3633 0.0032 1.0276 32 1 -0.3633 0.8885 -0.5166 33 1 -0.3634 -0.8915 -0.5110 34 1 4.4005 1.3685 -0.0108 35 1 0.9377 -2.6214 0.6007 36 1 2.6289 -3.1525 0.4388 37 1 -0.0942 -5.4441 -0.4685 38 1 1.2997 -4.7341 0.3888 39 1 1.5779 -7.1941 -0.0821 40 1 2.8447 -6.1906 -0.8255 41 1 -1.4170 -8.2613 -3.4147 42 1 0.2362 -8.8860 -3.6269 43 1 -0.8525 -6.1951 -4.5688 44 1 -0.3040 -7.5500 -5.5869 45 1 -0.1314 -6.1808 -8.0295 46 1 -0.1813 -4.8946 -3.1270 47 1 1.1688 -3.8972 -3.7224 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074392593.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:16 Heat of formation + Delta-G solvation = -14.438644 kcal Electronic energy + Delta-G solvation = -30210.629402 eV Core-core repulsion = 26201.268223 eV Total energy + Delta-G solvation = -4009.361179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.02953 -41.43601 -39.97414 -37.11445 -36.44660 -34.02394 -33.98877 -33.30604 -32.98549 -31.12653 -29.99855 -29.06473 -27.06941 -25.78281 -25.58289 -24.39608 -22.93390 -22.62888 -21.28179 -20.41909 -19.64231 -18.91872 -18.59774 -18.23818 -17.11123 -17.01089 -16.81540 -16.63826 -16.21922 -15.94358 -15.81165 -15.54089 -15.17857 -14.85692 -14.66658 -14.37944 -14.20245 -13.91501 -13.77296 -13.64852 -13.63116 -13.35847 -13.09194 -13.08819 -13.03635 -12.82678 -12.60473 -12.42435 -12.23583 -12.15676 -11.85857 -11.66102 -11.21966 -10.94875 -10.92082 -10.77681 -10.69215 -10.52221 -9.66594 -9.13642 -8.72079 -7.94964 -5.42074 1.02828 1.42522 1.43519 1.51073 1.65079 2.00424 2.22388 2.35121 2.45428 2.90652 3.19794 3.45171 3.57344 3.71162 3.86658 3.95834 4.02303 4.11455 4.16137 4.23199 4.28520 4.40657 4.44141 4.47447 4.51166 4.55087 4.62190 4.66591 4.83448 4.85150 4.87820 4.93301 4.99928 5.01959 5.07201 5.09119 5.24768 5.27003 5.32750 5.48277 5.57118 5.58651 5.83774 6.24428 6.35777 6.51084 6.62462 7.02230 7.16693 7.23188 7.69854 8.23531 9.09815 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014220 B = 0.003374 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.520452 B = 8296.136757 C = 9347.673184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.015 4.015 3 N -0.539 5.539 4 C 0.191 3.809 5 N -0.554 5.554 6 H 0.433 0.567 7 C -0.013 4.013 8 C -0.050 4.050 9 C 0.504 3.496 10 O -0.590 6.590 11 N -0.604 5.604 12 C 0.106 3.894 13 C -0.115 4.115 14 C 0.084 3.916 15 H 0.047 0.953 16 O -0.381 6.381 17 C 0.053 3.947 18 C 0.145 3.855 19 N -0.604 5.604 20 C -0.269 4.269 21 H 0.066 0.934 22 C -0.045 4.045 23 N -0.931 5.931 24 Si 0.969 3.031 25 H -0.272 1.272 26 H -0.293 1.293 27 H -0.280 1.280 28 C 0.132 3.868 29 H 0.062 0.938 30 C 0.126 3.874 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.244 0.756 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.077 0.923 38 H 0.132 0.868 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.045 0.955 43 H 0.000 1.000 44 H 0.066 0.934 45 H 0.252 0.748 46 H 0.047 0.953 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.777 1.331 22.214 22.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.143 4.143 3 N -0.260 5.260 4 C -0.094 4.094 5 N -0.159 5.159 6 H 0.274 0.726 7 C -0.129 4.129 8 C -0.091 4.091 9 C 0.293 3.707 10 O -0.471 6.471 11 N -0.337 5.337 12 C -0.015 4.015 13 C -0.154 4.154 14 C 0.024 3.976 15 H 0.065 0.935 16 O -0.300 6.300 17 C -0.025 4.025 18 C 0.019 3.981 19 N -0.327 5.327 20 C -0.399 4.399 21 H 0.084 0.916 22 C -0.241 4.241 23 N -0.577 5.577 24 Si 0.797 3.203 25 H -0.198 1.198 26 H -0.219 1.219 27 H -0.206 1.206 28 C 0.024 3.976 29 H 0.080 0.920 30 C 0.001 3.999 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.260 0.740 35 H 0.162 0.838 36 H 0.159 0.841 37 H 0.095 0.905 38 H 0.149 0.851 39 H 0.132 0.868 40 H 0.112 0.888 41 H 0.126 0.874 42 H 0.064 0.936 43 H 0.018 0.982 44 H 0.084 0.916 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.335 2.583 21.713 22.292 hybrid contribution 1.031 -0.932 -2.302 2.689 sum 5.366 1.651 19.411 20.207 Atomic orbital electron populations 1.20025 0.87525 1.01963 1.02802 1.20810 0.97243 0.88630 1.07638 1.70112 1.02227 1.31810 1.21833 1.25592 0.97462 0.82658 1.03644 1.43119 1.08065 1.08732 1.55941 0.72616 1.20464 0.84623 0.96052 1.11807 1.20169 1.06371 0.89922 0.92619 1.21347 0.76106 0.80915 0.92286 1.90739 1.54027 1.53997 1.48296 1.48325 1.65736 1.11789 1.07813 1.22065 1.01529 0.88673 0.89209 1.21864 1.01049 0.98134 0.94316 1.22212 0.83189 0.96079 0.96091 0.93475 1.87730 1.26039 1.79265 1.36938 1.23134 1.00540 0.94389 0.84417 1.21292 0.84756 0.94574 0.97472 1.44523 1.11818 1.68840 1.07533 1.19432 0.90001 1.45310 0.85133 0.91589 1.25796 0.97817 1.00373 1.00123 1.70172 1.15256 1.50468 1.21760 0.85327 0.77861 0.78652 0.78508 1.19785 1.21870 1.20623 1.21797 0.96649 0.91947 0.87173 0.91999 1.21773 0.99090 0.96365 0.82706 0.89282 0.92528 0.92076 0.74015 0.83773 0.84075 0.90471 0.85059 0.86825 0.88773 0.87403 0.93619 0.98232 0.91608 0.93925 0.93458 0.94531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.58 10.14 71.24 0.72 -0.86 16 2 C -0.01 -0.41 7.09 41.39 0.29 -0.11 16 3 N -0.54 -15.48 11.25 -188.31 -2.12 -17.60 16 4 C 0.19 3.90 13.04 180.26 2.35 6.25 16 5 N -0.55 -10.17 6.15 -186.49 -1.15 -11.31 16 6 H 0.43 4.81 8.96 -92.71 -0.83 3.98 16 7 C -0.01 -0.30 5.73 40.95 0.23 -0.06 16 8 C -0.05 -0.87 4.16 29.10 0.12 -0.74 16 9 C 0.50 14.93 7.69 87.66 0.67 15.60 16 10 O -0.59 -24.93 15.45 -3.05 -0.05 -24.97 16 11 N -0.60 -17.55 2.96 -817.78 -2.42 -19.97 16 12 C 0.11 1.93 6.18 86.34 0.53 2.46 16 13 C -0.12 -2.20 5.82 30.48 0.18 -2.02 16 14 C 0.08 2.60 2.71 30.34 0.08 2.69 16 15 H 0.05 1.53 8.12 -2.38 -0.02 1.51 16 16 O -0.38 -12.68 9.59 -148.98 -1.43 -14.11 16 17 C 0.05 1.92 6.98 72.06 0.50 2.43 16 18 C 0.14 6.88 4.94 86.33 0.43 7.30 16 19 N -0.60 -30.13 2.71 -672.13 -1.82 -31.95 16 20 C -0.27 -14.88 9.69 84.03 0.81 -14.06 16 21 H 0.07 3.58 7.88 -2.91 -0.02 3.55 16 22 C -0.05 -2.53 4.96 84.86 0.42 -2.10 16 23 N -0.93 -55.36 11.13 21.65 0.24 -55.12 16 24 Si 0.97 45.14 29.59 68.60 2.03 47.16 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 26 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 27 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 28 C 0.13 5.37 3.03 44.99 0.14 5.51 16 29 H 0.06 2.61 7.99 -2.38 -0.02 2.59 16 30 C 0.13 5.20 5.64 86.63 0.49 5.69 16 31 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.06 1.50 7.89 -2.39 -0.02 1.48 16 34 H 0.24 2.62 8.06 -2.91 -0.02 2.60 16 35 H 0.14 1.66 7.83 -2.39 -0.02 1.64 16 36 H 0.14 1.23 7.71 -2.39 -0.02 1.22 16 37 H 0.08 1.50 7.94 -2.39 -0.02 1.48 16 38 H 0.13 1.06 5.95 -2.39 -0.01 1.05 16 39 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 42 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.00 -0.02 7.17 -2.39 -0.02 -0.04 16 44 H 0.07 3.51 6.12 -2.39 -0.01 3.49 16 45 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 46 H 0.05 2.13 6.56 -2.39 -0.02 2.11 16 47 H 0.04 1.86 7.00 -2.39 -0.02 1.84 16 Total: -1.00 -84.57 370.30 1.43 -83.14 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.16 Total: 16.78 kcal Atomic # 6 Polarization: 19.98 SS G_CDS: 7.98 Total: 27.96 kcal Atomic # 7 Polarization: -128.69 SS G_CDS: -7.27 Total: -135.96 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -1.48 Total: -39.09 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -84.57 1.43 -83.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074392593.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.705 kcal (2) G-P(sol) polarization free energy of solvation -84.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds