Wall clock time and date at job start Tue Mar 31 2020 18:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34126 * 125.98741 * 2 1 4 4 C 1.30502 * 109.25226 * 180.02562 * 3 2 1 5 5 N 1.35040 * 108.70108 * 359.97438 * 4 3 2 6 6 H 0.97000 * 126.39809 * 180.02562 * 5 4 3 7 7 C 1.34663 * 125.98708 * 180.02562 * 2 1 3 8 8 C 1.50705 * 126.59661 * 359.97438 * 7 2 1 9 9 C 1.50706 * 109.46741 * 84.99845 * 8 7 2 10 10 O 1.21279 * 120.00275 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99754 * 180.02562 * 9 8 7 12 12 C 1.46835 * 120.40906 * 0.02562 * 11 9 8 13 13 C 1.53367 * 109.24062 * 127.74763 * 12 11 9 14 14 C 1.52782 * 108.82137 * 53.83735 * 13 12 11 15 15 H 1.09001 * 109.33807 * 57.15054 * 14 13 12 16 16 O 1.42599 * 111.12073 * 177.93896 * 14 13 12 17 17 C 1.43156 * 113.62371 * 183.64285 * 16 14 13 18 18 C 1.53187 * 109.73825 * 298.31356 * 17 16 14 19 19 N 1.47356 * 108.80848 * 51.20887 * 18 17 16 20 20 C 1.36934 * 121.30453 * 129.78952 * 19 18 17 21 21 H 1.08001 * 119.99609 * 206.93211 * 20 19 18 22 22 C 1.38810 * 120.00192 * 26.93260 * 20 19 18 23 23 N 1.31612 * 120.00020 * 14.44256 * 22 20 19 24 24 Si 1.86799 * 119.99755 * 194.44470 * 22 20 19 25 25 H 1.48499 * 109.47452 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47320 * 120.00136 * 24 22 20 27 27 H 1.48506 * 109.47190 * 239.99630 * 24 22 20 28 28 C 1.46804 * 117.00098 * 309.43742 * 19 18 17 29 29 H 1.08997 * 110.05390 * 292.88183 * 28 19 18 30 30 C 1.47129 * 120.40500 * 179.72905 * 11 9 8 31 31 H 1.08995 * 109.47029 * 89.97587 * 1 2 3 32 32 H 1.09008 * 109.47165 * 209.97570 * 1 2 3 33 33 H 1.08999 * 109.47268 * 329.97067 * 1 2 3 34 34 H 1.08000 * 125.64493 * 179.73680 * 4 3 2 35 35 H 1.08997 * 109.47192 * 205.00104 * 8 7 2 36 36 H 1.08996 * 109.47086 * 325.00562 * 8 7 2 37 37 H 1.08998 * 109.51301 * 247.67478 * 12 11 9 38 38 H 1.08996 * 109.51444 * 7.81773 * 12 11 9 39 39 H 1.08998 * 109.58341 * 173.63957 * 13 12 11 40 40 H 1.08998 * 109.58154 * 293.90434 * 13 12 11 41 41 H 1.09001 * 109.42243 * 58.39755 * 17 16 14 42 42 H 1.08999 * 109.42609 * 178.28493 * 17 16 14 43 43 H 1.09000 * 109.58086 * 170.99761 * 18 17 16 44 44 H 1.08997 * 109.58732 * 291.40637 * 18 17 16 45 45 H 0.97006 * 119.99677 * 180.02562 * 23 22 20 46 46 H 1.09000 * 109.73108 * 352.89436 * 30 11 9 47 47 H 1.08997 * 109.72596 * 113.56688 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5449 0.7095 -0.0006 5 7 3.5913 -0.6401 -0.0004 6 1 4.3913 -1.1886 -0.0003 7 6 2.2983 -1.0896 -0.0005 8 6 1.8473 -2.5276 -0.0006 9 6 1.5782 -2.9695 -1.4161 10 8 1.7375 -2.1934 -2.3343 11 7 1.1605 -4.2272 -1.6615 12 6 0.9641 -5.1740 -0.5565 13 6 -0.4406 -5.7816 -0.6552 14 6 -0.6239 -6.3751 -2.0511 15 1 0.1574 -7.1124 -2.2353 16 8 -1.9005 -6.9970 -2.1814 17 6 -2.0974 -7.6438 -3.4433 18 6 -2.0169 -6.6113 -4.5720 19 7 -0.7769 -5.8308 -4.4144 20 6 0.0879 -5.6501 -5.4606 21 1 1.1375 -5.4811 -5.2705 22 6 -0.3845 -5.6841 -6.7654 23 7 -1.6771 -5.6038 -6.9996 24 14 0.8145 -5.8439 -8.1889 25 1 2.2012 -5.9151 -7.6625 26 1 0.5113 -7.0792 -8.9552 27 1 0.6841 -4.6636 -9.0808 28 6 -0.5175 -5.2519 -3.0905 29 1 -1.2526 -4.4778 -2.8705 30 6 0.8895 -4.6663 -3.0393 31 1 -0.3633 0.0004 -1.0276 32 1 -0.3634 -0.8903 0.5135 33 1 -0.3634 0.8897 0.5143 34 1 4.4004 1.3687 -0.0047 35 1 2.6273 -3.1531 0.4333 36 1 0.9355 -2.6224 0.5891 37 1 1.7091 -5.9672 -0.6200 38 1 1.0685 -4.6510 0.3941 39 1 -0.5526 -6.5664 0.0929 40 1 -1.1870 -5.0057 -0.4852 41 1 -1.3254 -8.3996 -3.5875 42 1 -3.0779 -8.1197 -3.4576 43 1 -2.0067 -7.1224 -5.5347 44 1 -2.8774 -5.9444 -4.5193 45 1 -2.0072 -5.6279 -7.9114 46 1 0.9569 -3.8150 -3.7168 47 1 1.6123 -5.4279 -3.3316 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074392594.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:20 Heat of formation + Delta-G solvation = 10.575582 kcal Electronic energy + Delta-G solvation = -30155.422730 eV Core-core repulsion = 26147.146249 eV Total energy + Delta-G solvation = -4008.276480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.17745 -40.13225 -38.57193 -36.09878 -34.76214 -33.15204 -32.95868 -31.73221 -31.42449 -30.00162 -28.91920 -27.12193 -26.03442 -24.84219 -23.97896 -22.18435 -21.79697 -21.40015 -19.95806 -19.64870 -18.93366 -17.74972 -17.25950 -16.81784 -15.81406 -15.64082 -15.38960 -15.12253 -14.93723 -14.75616 -14.47787 -14.00284 -13.82906 -13.56317 -13.25881 -13.09650 -12.95832 -12.86837 -12.74702 -12.69457 -12.56481 -12.20397 -12.04512 -11.88567 -11.37816 -11.04338 -10.99987 -10.86888 -10.63867 -10.28684 -10.22041 -10.02631 -10.01128 -9.93463 -9.67126 -9.61255 -9.02280 -8.57245 -8.40692 -8.25153 -6.76661 -5.86458 -3.32460 1.90477 2.72185 2.95458 3.07484 3.23990 3.32859 3.41106 3.42539 4.20023 4.39588 4.43534 4.57566 4.66611 4.79498 4.83509 5.11576 5.15650 5.19368 5.25965 5.30074 5.34128 5.36125 5.47901 5.64950 5.70703 5.79229 5.85624 5.89527 5.93956 6.03367 6.06798 6.10363 6.12214 6.21364 6.30300 6.43025 6.60442 6.66177 6.73642 6.83725 7.11055 7.29562 7.49511 7.54685 7.68278 7.86207 8.02950 8.28929 8.32501 9.06969 9.70262 10.28125 11.21368 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012941 B = 0.003591 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.185856 B = 7795.944814 C = 9089.222219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.023 3.977 3 N -0.492 5.492 4 C 0.187 3.813 5 N -0.563 5.563 6 H 0.417 0.583 7 C -0.007 4.007 8 C -0.064 4.064 9 C 0.511 3.489 10 O -0.524 6.524 11 N -0.612 5.612 12 C 0.111 3.889 13 C -0.125 4.125 14 C 0.077 3.923 15 H 0.052 0.948 16 O -0.390 6.390 17 C 0.040 3.960 18 C 0.141 3.859 19 N -0.588 5.588 20 C -0.257 4.257 21 H 0.072 0.928 22 C 0.007 3.993 23 N -0.901 5.901 24 Si 0.904 3.096 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.288 1.288 28 C 0.136 3.864 29 H 0.037 0.963 30 C 0.124 3.876 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.207 0.793 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.040 0.960 42 H 0.081 0.919 43 H 0.097 0.903 44 H 0.028 0.972 45 H 0.255 0.745 46 H 0.101 0.899 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.854 1.496 18.262 19.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.107 4.107 3 N -0.212 5.212 4 C -0.097 4.097 5 N -0.167 5.167 6 H 0.254 0.746 7 C -0.122 4.122 8 C -0.105 4.105 9 C 0.297 3.703 10 O -0.399 6.399 11 N -0.346 5.346 12 C -0.013 4.013 13 C -0.164 4.164 14 C 0.017 3.983 15 H 0.070 0.930 16 O -0.309 6.309 17 C -0.038 4.038 18 C 0.015 3.985 19 N -0.312 5.312 20 C -0.386 4.386 21 H 0.090 0.910 22 C -0.192 4.192 23 N -0.545 5.545 24 Si 0.734 3.266 25 H -0.202 1.202 26 H -0.215 1.215 27 H -0.215 1.215 28 C 0.028 3.972 29 H 0.055 0.945 30 C 0.003 3.997 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.223 0.777 35 H 0.116 0.884 36 H 0.134 0.866 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.059 0.941 42 H 0.099 0.901 43 H 0.115 0.885 44 H 0.046 0.954 45 H 0.065 0.935 46 H 0.120 0.880 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.419 2.768 17.705 19.395 hybrid contribution 1.428 -1.262 -1.141 2.221 sum 8.847 1.506 16.564 18.839 Atomic orbital electron populations 1.20062 0.87790 1.02156 1.02742 1.20429 0.96397 0.87771 1.06057 1.70164 1.00566 1.30683 1.19805 1.24839 0.97345 0.81843 1.05691 1.43097 1.07882 1.08687 1.56985 0.74567 1.20176 0.84091 0.95430 1.12540 1.20077 1.03642 0.90710 0.96053 1.20409 0.77616 0.81476 0.90797 1.90760 1.51092 1.52010 1.46029 1.48289 1.66470 1.11312 1.08561 1.21716 0.96982 0.92834 0.89729 1.21845 0.96586 1.00905 0.97040 1.22427 0.86171 0.95159 0.94540 0.92983 1.87738 1.34497 1.72439 1.36212 1.23336 0.99903 0.95686 0.84892 1.21473 0.88096 0.92029 0.96893 1.44048 1.23868 1.57660 1.05649 1.19163 0.89444 1.45458 0.84577 0.91006 1.25072 0.95880 1.00425 0.97862 1.70011 1.11774 1.53192 1.19513 0.86198 0.80508 0.77431 0.82505 1.20202 1.21468 1.21519 1.21207 0.94579 0.93365 0.88001 0.94503 1.21670 0.96556 1.00910 0.80598 0.90934 0.91629 0.91282 0.77668 0.88429 0.86648 0.91142 0.89633 0.90217 0.90696 0.94144 0.90063 0.88478 0.95427 0.93494 0.88049 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.22 36.01 0.37 -0.50 16 2 C 0.02 0.32 7.09 -82.85 -0.59 -0.27 16 3 N -0.49 -7.12 11.25 -10.87 -0.12 -7.25 16 4 C 0.19 2.01 13.04 -90.38 -1.18 0.83 16 5 N -0.56 -5.57 6.15 -10.30 -0.06 -5.64 16 6 H 0.42 2.70 8.96 -40.82 -0.37 2.33 16 7 C -0.01 -0.09 5.73 -81.60 -0.47 -0.55 16 8 C -0.06 -0.64 4.33 -29.03 -0.13 -0.76 16 9 C 0.51 7.57 7.69 -10.98 -0.08 7.48 16 10 O -0.52 -10.37 15.44 5.56 0.09 -10.29 16 11 N -0.61 -8.87 2.99 -173.00 -0.52 -9.39 16 12 C 0.11 1.15 6.32 -3.67 -0.02 1.12 16 13 C -0.13 -1.56 5.82 -26.65 -0.16 -1.71 16 14 C 0.08 1.33 2.49 -26.64 -0.07 1.26 16 15 H 0.05 0.92 8.13 -51.93 -0.42 0.49 16 16 O -0.39 -7.43 10.48 -35.23 -0.37 -7.80 16 17 C 0.04 0.76 6.95 37.25 0.26 1.02 16 18 C 0.14 3.32 5.41 -3.48 -0.02 3.30 16 19 N -0.59 -14.40 3.04 -164.70 -0.50 -14.90 16 20 C -0.26 -6.82 8.88 -15.06 -0.13 -6.96 16 21 H 0.07 1.86 6.27 -52.49 -0.33 1.53 16 22 C 0.01 0.18 5.01 -17.43 -0.09 0.10 16 23 N -0.90 -25.71 11.06 55.49 0.61 -25.10 16 24 Si 0.90 21.50 29.58 -169.99 -5.03 16.48 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 C 0.14 2.82 3.00 -67.82 -0.20 2.62 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 30 C 0.12 2.35 4.47 -3.96 -0.02 2.34 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.66 7.28 -51.92 -0.38 0.28 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.21 1.31 8.06 -52.49 -0.42 0.88 16 35 H 0.10 0.66 7.96 -51.93 -0.41 0.25 16 36 H 0.12 0.92 6.85 -51.93 -0.36 0.56 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.58 5.91 -51.93 -0.31 0.28 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.10 2.50 6.16 -51.93 -0.32 2.18 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.10 2.28 6.81 -51.93 -0.35 1.93 16 47 H 0.07 1.37 7.31 -51.93 -0.38 0.99 16 LS Contribution 369.05 15.07 5.56 5.56 Total: -1.00 -35.68 369.05 -9.85 -45.53 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.99 Total: 3.48 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: -2.52 Total: 9.31 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: -0.59 Total: -62.26 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.28 Total: -18.09 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.68 -9.85 -45.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074392594.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.106 kcal (2) G-P(sol) polarization free energy of solvation -35.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds