Wall clock time and date at job start Tue Mar 31 2020 18:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34126 * 125.98741 * 2 1 4 4 C 1.30502 * 109.25226 * 180.02562 * 3 2 1 5 5 N 1.35040 * 108.70108 * 359.97438 * 4 3 2 6 6 H 0.97000 * 126.39809 * 180.02562 * 5 4 3 7 7 C 1.34663 * 125.98708 * 180.02562 * 2 1 3 8 8 C 1.50705 * 126.59661 * 359.97438 * 7 2 1 9 9 C 1.50706 * 109.46741 * 84.99845 * 8 7 2 10 10 O 1.21279 * 120.00275 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99754 * 180.02562 * 9 8 7 12 12 C 1.46835 * 120.40906 * 0.02562 * 11 9 8 13 13 C 1.53367 * 109.24062 * 127.74763 * 12 11 9 14 14 C 1.52782 * 108.82137 * 53.83735 * 13 12 11 15 15 H 1.09001 * 109.33807 * 57.15054 * 14 13 12 16 16 O 1.42599 * 111.12073 * 177.93896 * 14 13 12 17 17 C 1.43156 * 113.62371 * 183.64285 * 16 14 13 18 18 C 1.53187 * 109.73825 * 298.31356 * 17 16 14 19 19 N 1.47356 * 108.80848 * 51.20887 * 18 17 16 20 20 C 1.36934 * 121.30453 * 129.78952 * 19 18 17 21 21 H 1.08001 * 119.99609 * 206.93211 * 20 19 18 22 22 C 1.38810 * 120.00192 * 26.93260 * 20 19 18 23 23 N 1.31612 * 120.00020 * 14.44256 * 22 20 19 24 24 Si 1.86799 * 119.99755 * 194.44470 * 22 20 19 25 25 H 1.48499 * 109.47452 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47320 * 120.00136 * 24 22 20 27 27 H 1.48506 * 109.47190 * 239.99630 * 24 22 20 28 28 C 1.46804 * 117.00098 * 309.43742 * 19 18 17 29 29 H 1.08997 * 110.05390 * 292.88183 * 28 19 18 30 30 C 1.47129 * 120.40500 * 179.72905 * 11 9 8 31 31 H 1.08995 * 109.47029 * 89.97587 * 1 2 3 32 32 H 1.09008 * 109.47165 * 209.97570 * 1 2 3 33 33 H 1.08999 * 109.47268 * 329.97067 * 1 2 3 34 34 H 1.08000 * 125.64493 * 179.73680 * 4 3 2 35 35 H 1.08997 * 109.47192 * 205.00104 * 8 7 2 36 36 H 1.08996 * 109.47086 * 325.00562 * 8 7 2 37 37 H 1.08998 * 109.51301 * 247.67478 * 12 11 9 38 38 H 1.08996 * 109.51444 * 7.81773 * 12 11 9 39 39 H 1.08998 * 109.58341 * 173.63957 * 13 12 11 40 40 H 1.08998 * 109.58154 * 293.90434 * 13 12 11 41 41 H 1.09001 * 109.42243 * 58.39755 * 17 16 14 42 42 H 1.08999 * 109.42609 * 178.28493 * 17 16 14 43 43 H 1.09000 * 109.58086 * 170.99761 * 18 17 16 44 44 H 1.08997 * 109.58732 * 291.40637 * 18 17 16 45 45 H 0.97006 * 119.99677 * 180.02562 * 23 22 20 46 46 H 1.09000 * 109.73108 * 352.89436 * 30 11 9 47 47 H 1.08997 * 109.72596 * 113.56688 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5449 0.7095 -0.0006 5 7 3.5913 -0.6401 -0.0004 6 1 4.3913 -1.1886 -0.0003 7 6 2.2983 -1.0896 -0.0005 8 6 1.8473 -2.5276 -0.0006 9 6 1.5782 -2.9695 -1.4161 10 8 1.7375 -2.1934 -2.3343 11 7 1.1605 -4.2272 -1.6615 12 6 0.9641 -5.1740 -0.5565 13 6 -0.4406 -5.7816 -0.6552 14 6 -0.6239 -6.3751 -2.0511 15 1 0.1574 -7.1124 -2.2353 16 8 -1.9005 -6.9970 -2.1814 17 6 -2.0974 -7.6438 -3.4433 18 6 -2.0169 -6.6113 -4.5720 19 7 -0.7769 -5.8308 -4.4144 20 6 0.0879 -5.6501 -5.4606 21 1 1.1375 -5.4811 -5.2705 22 6 -0.3845 -5.6841 -6.7654 23 7 -1.6771 -5.6038 -6.9996 24 14 0.8145 -5.8439 -8.1889 25 1 2.2012 -5.9151 -7.6625 26 1 0.5113 -7.0792 -8.9552 27 1 0.6841 -4.6636 -9.0808 28 6 -0.5175 -5.2519 -3.0905 29 1 -1.2526 -4.4778 -2.8705 30 6 0.8895 -4.6663 -3.0393 31 1 -0.3633 0.0004 -1.0276 32 1 -0.3634 -0.8903 0.5135 33 1 -0.3634 0.8897 0.5143 34 1 4.4004 1.3687 -0.0047 35 1 2.6273 -3.1531 0.4333 36 1 0.9355 -2.6224 0.5891 37 1 1.7091 -5.9672 -0.6200 38 1 1.0685 -4.6510 0.3941 39 1 -0.5526 -6.5664 0.0929 40 1 -1.1870 -5.0057 -0.4852 41 1 -1.3254 -8.3996 -3.5875 42 1 -3.0779 -8.1197 -3.4576 43 1 -2.0067 -7.1224 -5.5347 44 1 -2.8774 -5.9444 -4.5193 45 1 -2.0072 -5.6279 -7.9114 46 1 0.9569 -3.8150 -3.7168 47 1 1.6123 -5.4279 -3.3316 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074392594.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:19 Heat of formation + Delta-G solvation = -15.155886 kcal Electronic energy + Delta-G solvation = -30156.538530 eV Core-core repulsion = 26147.146249 eV Total energy + Delta-G solvation = -4009.392280 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.03423 -41.42601 -40.00509 -37.41112 -36.55846 -34.06078 -34.01796 -33.27913 -32.89913 -31.45331 -29.98354 -28.82226 -27.18593 -26.15649 -25.45588 -23.69419 -22.93365 -22.54245 -21.49368 -20.80419 -19.98408 -18.76670 -18.54988 -18.36399 -17.21738 -17.07550 -16.66673 -16.63164 -16.22804 -15.93125 -15.69053 -15.53001 -15.32897 -14.88263 -14.70021 -14.49835 -14.26158 -14.00540 -13.80017 -13.71977 -13.69342 -13.31337 -13.11666 -12.98984 -12.90634 -12.86754 -12.68635 -12.37152 -12.31984 -12.03812 -11.90108 -11.72621 -11.25466 -10.98052 -10.91895 -10.76784 -10.70859 -10.53626 -9.67823 -9.15109 -8.76395 -7.93788 -5.42826 1.01906 1.40725 1.43055 1.52580 1.61604 1.94728 2.21081 2.33840 2.44579 2.85020 3.21531 3.45085 3.55728 3.69408 3.85358 3.92525 4.01941 4.10709 4.12075 4.20355 4.28729 4.37444 4.42077 4.47046 4.47689 4.52040 4.56663 4.62433 4.72023 4.83892 4.85189 4.88517 5.02516 5.03592 5.08610 5.13708 5.14269 5.26048 5.34047 5.44938 5.54525 5.59577 5.83143 6.23968 6.34704 6.42890 6.62632 7.02144 7.16991 7.19167 7.70155 8.25578 9.12122 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012941 B = 0.003591 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.185856 B = 7795.944814 C = 9089.222219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.015 4.015 3 N -0.541 5.541 4 C 0.192 3.808 5 N -0.553 5.553 6 H 0.434 0.566 7 C -0.012 4.012 8 C -0.052 4.052 9 C 0.507 3.493 10 O -0.585 6.585 11 N -0.609 5.609 12 C 0.107 3.893 13 C -0.118 4.118 14 C 0.080 3.920 15 H 0.057 0.943 16 O -0.392 6.392 17 C 0.053 3.947 18 C 0.144 3.856 19 N -0.606 5.606 20 C -0.259 4.259 21 H 0.075 0.925 22 C -0.049 4.049 23 N -0.936 5.936 24 Si 0.966 3.034 25 H -0.266 1.266 26 H -0.283 1.283 27 H -0.297 1.297 28 C 0.133 3.867 29 H 0.003 0.997 30 C 0.140 3.860 31 H 0.043 0.957 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.244 0.756 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.094 0.906 38 H 0.137 0.863 39 H 0.116 0.884 40 H 0.069 0.931 41 H 0.050 0.950 42 H 0.108 0.892 43 H 0.071 0.929 44 H -0.006 1.006 45 H 0.251 0.749 46 H 0.053 0.947 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.109 -0.168 21.839 24.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.144 4.144 3 N -0.261 5.261 4 C -0.093 4.093 5 N -0.158 5.158 6 H 0.275 0.725 7 C -0.128 4.128 8 C -0.092 4.092 9 C 0.296 3.704 10 O -0.465 6.465 11 N -0.342 5.342 12 C -0.014 4.014 13 C -0.157 4.157 14 C 0.021 3.979 15 H 0.075 0.925 16 O -0.311 6.311 17 C -0.024 4.024 18 C 0.019 3.981 19 N -0.331 5.331 20 C -0.388 4.388 21 H 0.092 0.908 22 C -0.244 4.244 23 N -0.582 5.582 24 Si 0.794 3.206 25 H -0.190 1.190 26 H -0.210 1.210 27 H -0.225 1.225 28 C 0.026 3.974 29 H 0.021 0.979 30 C 0.017 3.983 31 H 0.062 0.938 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.260 0.740 35 H 0.163 0.837 36 H 0.163 0.837 37 H 0.112 0.888 38 H 0.155 0.845 39 H 0.134 0.866 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.126 0.874 43 H 0.089 0.911 44 H 0.012 0.988 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.701 1.059 21.355 23.479 hybrid contribution 0.734 -0.652 -2.244 2.449 sum 10.435 0.407 19.112 21.779 Atomic orbital electron populations 1.20049 0.87769 1.03501 1.01232 1.20774 0.97110 0.88754 1.07715 1.70116 1.02316 1.31881 1.21816 1.25597 0.97403 0.82709 1.03553 1.43099 1.08009 1.08675 1.55979 0.72506 1.20436 0.84631 0.96029 1.11734 1.20189 1.06533 0.89960 0.92514 1.21348 0.76071 0.80602 0.92366 1.90746 1.53650 1.53628 1.48429 1.48345 1.65997 1.12311 1.07596 1.22159 0.96106 0.93100 0.89999 1.21915 0.97883 1.01635 0.94251 1.22564 0.85540 0.93569 0.96273 0.92527 1.87749 1.35661 1.72353 1.35381 1.23152 1.01818 0.94151 0.83329 1.21331 0.86736 0.92266 0.97789 1.44356 1.23677 1.58299 1.06804 1.19468 0.90017 1.43954 0.85406 0.90788 1.25825 0.97317 1.01047 1.00210 1.70170 1.13429 1.55043 1.19522 0.85233 0.79107 0.76896 0.79406 1.18980 1.20953 1.22450 1.21378 0.94610 0.94120 0.87340 0.97886 1.21110 0.95398 0.98659 0.83147 0.93780 0.89217 0.91088 0.73963 0.83698 0.83702 0.88779 0.84499 0.86620 0.91245 0.93163 0.87440 0.91086 0.98807 0.93995 0.92810 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.69 10.22 71.24 0.73 -0.96 16 2 C -0.02 -0.42 7.09 41.39 0.29 -0.12 16 3 N -0.54 -15.40 11.25 -188.32 -2.12 -17.52 16 4 C 0.19 3.77 13.04 180.26 2.35 6.12 16 5 N -0.55 -9.46 6.15 -186.49 -1.15 -10.61 16 6 H 0.43 4.10 8.96 -92.71 -0.83 3.26 16 7 C -0.01 -0.26 5.73 40.95 0.23 -0.03 16 8 C -0.05 -0.81 4.33 29.11 0.13 -0.69 16 9 C 0.51 14.14 7.69 87.66 0.67 14.81 16 10 O -0.59 -23.69 15.44 -3.03 -0.05 -23.74 16 11 N -0.61 -16.38 2.99 -819.63 -2.45 -18.83 16 12 C 0.11 1.65 6.32 86.44 0.55 2.20 16 13 C -0.12 -2.44 5.82 30.64 0.18 -2.26 16 14 C 0.08 2.60 2.49 30.66 0.08 2.68 16 15 H 0.06 1.83 8.13 -2.39 -0.02 1.81 16 16 O -0.39 -14.27 10.48 -148.98 -1.56 -15.83 16 17 C 0.05 2.01 6.95 72.04 0.50 2.51 16 18 C 0.14 7.09 5.41 86.28 0.47 7.56 16 19 N -0.61 -30.85 3.04 -674.99 -2.05 -32.90 16 20 C -0.26 -14.22 8.88 84.03 0.75 -13.48 16 21 H 0.07 3.95 6.27 -2.91 -0.02 3.94 16 22 C -0.05 -2.74 5.01 84.86 0.43 -2.31 16 23 N -0.94 -56.05 11.06 21.65 0.24 -55.81 16 24 Si 0.97 45.53 29.58 68.60 2.03 47.55 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 26 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 27 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 28 C 0.13 5.60 3.00 44.90 0.13 5.74 16 29 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 30 C 0.14 5.41 4.47 86.09 0.38 5.80 16 31 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.09 1.68 7.28 -2.38 -0.02 1.66 16 33 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.24 2.42 8.06 -2.91 -0.02 2.40 16 35 H 0.15 0.97 7.96 -2.39 -0.02 0.95 16 36 H 0.15 1.48 6.85 -2.39 -0.02 1.47 16 37 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.14 0.81 5.91 -2.39 -0.01 0.80 16 39 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 43 H 0.07 3.84 6.16 -2.39 -0.01 3.82 16 44 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 45 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 46 H 0.05 2.58 6.81 -2.39 -0.02 2.56 16 47 H 0.07 2.68 7.31 -2.39 -0.02 2.66 16 Total: -1.00 -86.76 369.05 0.93 -85.83 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.17 Total: 14.28 kcal Atomic # 6 Polarization: 19.70 SS G_CDS: 7.87 Total: 27.56 kcal Atomic # 7 Polarization: -128.14 SS G_CDS: -7.53 Total: -135.66 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -1.61 Total: -39.57 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -86.76 0.93 -85.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074392594.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.675 kcal (2) G-P(sol) polarization free energy of solvation -86.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds