Wall clock time and date at job start Tue Mar 31 2020 18:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34488 * 126.83328 * 2 1 4 4 N 1.36444 * 108.85382 * 179.97438 * 3 2 1 5 5 H 0.97003 * 124.85192 * 180.02562 * 4 3 2 6 6 C 1.34664 * 110.30049 * 359.72657 * 4 3 2 7 7 C 1.50693 * 125.80262 * 180.30221 * 6 4 3 8 8 C 1.50698 * 109.47148 * 265.16640 * 7 6 4 9 9 N 1.34776 * 120.00155 * 180.02562 * 8 7 6 10 10 O 1.21280 * 120.00205 * 359.97438 * 8 7 6 11 11 C 1.36771 * 108.39482 * 0.44078 * 6 4 3 12 12 C 1.47254 * 126.94246 * 179.83431 * 11 6 4 13 13 O 1.21623 * 120.00583 * 269.71518 * 12 11 6 14 14 N 1.34779 * 119.99918 * 89.71696 * 12 11 6 15 15 C 1.46498 * 120.00001 * 180.02562 * 14 12 11 16 16 H 1.09000 * 110.78116 * 31.76065 * 15 14 12 17 17 C 1.54331 * 110.84819 * 268.68731 * 15 14 12 18 18 N 1.47021 * 107.26657 * 219.67261 * 17 15 14 19 19 C 1.36938 * 125.64884 * 178.84890 * 18 17 15 20 20 H 1.08000 * 120.00291 * 185.41230 * 19 18 17 21 21 C 1.38813 * 119.99818 * 5.69511 * 19 18 17 22 22 N 1.31616 * 120.00127 * 352.79660 * 21 19 18 23 23 Si 1.86806 * 119.99821 * 172.79833 * 21 19 18 24 24 H 1.48503 * 109.46988 * 94.98414 * 23 21 19 25 25 H 1.48503 * 109.46911 * 214.98618 * 23 21 19 26 26 H 1.48497 * 109.47058 * 334.98418 * 23 21 19 27 27 C 1.47420 * 108.70410 * 358.58836 * 18 17 15 28 28 C 1.54906 * 104.83159 * 24.35335 * 27 18 17 29 29 H 1.09000 * 111.00286 * 81.06859 * 28 27 18 30 30 C 1.53006 * 111.00657 * 204.87795 * 28 27 18 31 31 H 1.08990 * 109.47547 * 270.05056 * 1 2 3 32 32 H 1.09010 * 109.46836 * 30.05228 * 1 2 3 33 33 H 1.09006 * 109.46769 * 150.04475 * 1 2 3 34 34 H 1.07995 * 125.56911 * 359.97360 * 3 2 1 35 35 H 1.09001 * 109.47121 * 25.16643 * 7 6 4 36 36 H 1.08998 * 109.47095 * 145.16614 * 7 6 4 37 37 H 0.96998 * 120.00219 * 359.97438 * 9 8 7 38 38 H 0.96998 * 120.00281 * 179.97438 * 9 8 7 39 39 H 0.97003 * 119.99772 * 359.97438 * 14 12 11 40 40 H 1.09004 * 109.98835 * 100.20310 * 17 15 14 41 41 H 1.09002 * 109.78238 * 339.03283 * 17 15 14 42 42 H 0.96998 * 119.99815 * 179.97438 * 22 21 19 43 43 H 1.09002 * 110.37180 * 143.19478 * 27 18 17 44 44 H 1.08999 * 110.36698 * 265.40438 * 27 18 17 45 45 H 1.08997 * 109.46604 * 58.54630 * 30 28 27 46 46 H 1.09002 * 109.46792 * 178.54743 * 30 28 27 47 47 H 1.09001 * 109.46965 * 298.54524 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6552 0.0006 5 1 4.3841 1.2413 0.0011 6 6 3.6656 -0.6903 0.0070 7 6 4.9225 -1.5216 0.0160 8 6 5.2813 -1.9050 -1.3965 9 7 6.3758 -2.6549 -1.6339 10 8 4.5847 -1.5397 -2.3196 11 6 2.3864 -1.1741 0.0008 12 6 1.9749 -2.5880 0.0010 13 8 1.8058 -3.1724 -1.0521 14 7 1.7857 -3.2346 1.1683 15 6 1.3769 -4.6414 1.1686 16 1 1.7850 -5.1628 0.3028 17 6 -0.1610 -4.7664 1.2002 18 7 -0.4896 -5.8841 2.0969 19 6 -1.7525 -6.3083 2.4139 20 1 -1.8922 -7.0844 3.1519 21 6 -2.8528 -5.7448 1.7825 22 7 -2.6955 -4.7087 0.9862 23 14 -4.5568 -6.4571 2.0630 24 1 -5.2368 -5.7020 3.1460 25 1 -5.3499 -6.3506 0.8120 26 1 -4.4383 -7.8847 2.4540 27 6 0.7656 -6.4767 2.5935 28 6 1.8114 -5.3391 2.4846 29 1 1.7363 -4.6571 3.3316 30 6 3.2276 -5.9056 2.3643 31 1 -0.3634 0.0009 1.0275 32 1 -0.3633 0.8896 -0.5147 33 1 -0.3633 -0.8905 -0.5132 34 1 1.9868 2.1058 -0.0004 35 1 5.7368 -0.9442 0.4538 36 1 4.7577 -2.4228 0.6065 37 1 6.9327 -2.9474 -0.8956 38 1 6.6065 -2.9020 -2.5430 39 1 1.9209 -2.7686 2.0083 40 1 -0.5388 -4.9715 0.1985 41 1 -0.5984 -3.8439 1.5819 42 1 -3.4644 -4.3153 0.5447 43 1 0.6527 -6.7902 3.6313 44 1 1.0574 -7.3232 1.9719 45 1 3.2879 -6.5494 1.4868 46 1 3.9393 -5.0861 2.2635 47 1 3.4643 -6.4846 3.2569 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080482698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:22 Heat of formation + Delta-G solvation = -8.935916 kcal Electronic energy + Delta-G solvation = -29799.402311 eV Core-core repulsion = 25790.279749 eV Total energy + Delta-G solvation = -4009.122562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.31628 -39.26367 -38.97514 -37.20171 -33.84699 -33.68591 -32.75048 -32.49670 -31.54097 -30.31410 -28.55455 -27.32876 -25.85773 -25.56037 -23.80716 -22.30502 -21.16117 -20.12948 -19.81061 -19.35544 -18.77582 -18.01055 -17.15116 -16.83031 -16.70924 -16.06440 -15.68928 -15.16150 -14.87683 -14.40918 -14.10472 -13.79413 -13.67720 -13.56430 -13.28142 -12.99923 -12.96826 -12.72044 -12.56702 -12.53520 -12.39327 -11.97845 -11.80962 -11.64769 -11.28481 -11.11445 -10.96770 -10.71426 -10.52961 -10.30184 -10.14095 -9.89201 -9.87249 -9.84992 -9.65846 -9.34889 -8.50315 -8.37790 -8.28212 -8.06150 -6.74481 -5.62254 -2.96328 2.07674 2.51179 2.72397 3.11034 3.19043 3.45750 3.48843 3.51310 3.53928 3.90260 4.40087 4.57473 4.71278 4.84531 5.08048 5.12846 5.17493 5.35567 5.39502 5.50316 5.57765 5.60187 5.70162 5.84902 6.01005 6.05668 6.07291 6.08922 6.20175 6.26692 6.31243 6.42122 6.44599 6.57272 6.58956 6.69395 6.91999 6.92910 7.03774 7.06821 7.11101 7.51455 7.66839 7.72146 7.94874 8.12066 8.14452 8.34494 8.86485 9.29546 9.90557 10.56359 11.48563 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013625 B = 0.003558 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.573090 B = 7868.467798 C = 9120.113992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.124 4.124 3 C -0.014 4.014 4 N -0.548 5.548 5 H 0.411 0.589 6 C 0.072 3.928 7 C -0.077 4.077 8 C 0.512 3.488 9 N -0.859 5.859 10 O -0.514 6.514 11 C -0.185 4.185 12 C 0.587 3.413 13 O -0.528 6.528 14 N -0.708 5.708 15 C 0.120 3.880 16 H 0.086 0.914 17 C 0.173 3.827 18 N -0.606 5.606 19 C -0.233 4.233 20 H 0.078 0.922 21 C -0.005 4.005 22 N -0.914 5.914 23 Si 0.908 3.092 24 H -0.290 1.290 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.141 3.859 28 C -0.114 4.114 29 H 0.077 0.923 30 C -0.135 4.135 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.168 0.832 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.399 0.601 38 H 0.402 0.598 39 H 0.395 0.605 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.252 0.748 43 H 0.040 0.960 44 H 0.021 0.979 45 H 0.054 0.946 46 H 0.048 0.952 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.432 10.740 2.395 24.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C -0.142 4.142 4 N -0.142 5.142 5 H 0.247 0.753 6 C -0.043 4.043 7 C -0.117 4.117 8 C 0.296 3.704 9 N -0.424 5.424 10 O -0.387 6.387 11 C -0.196 4.196 12 C 0.372 3.628 13 O -0.404 6.404 14 N -0.358 5.358 15 C 0.015 3.985 16 H 0.104 0.896 17 C 0.047 3.953 18 N -0.333 5.333 19 C -0.361 4.361 20 H 0.096 0.904 21 C -0.202 4.202 22 N -0.561 5.561 23 Si 0.738 3.262 24 H -0.218 1.218 25 H -0.216 1.216 26 H -0.207 1.207 27 C 0.015 3.985 28 C -0.134 4.134 29 H 0.095 0.905 30 C -0.193 4.193 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.185 0.815 35 H 0.121 0.879 36 H 0.134 0.866 37 H 0.227 0.773 38 H 0.233 0.767 39 H 0.229 0.771 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.038 0.962 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 20.572 10.785 1.065 23.252 hybrid contribution -0.166 -0.049 0.486 0.516 sum 20.406 10.736 1.551 23.110 Atomic orbital electron populations 1.20176 0.89243 1.02687 1.02102 1.20502 0.95402 0.90297 1.06854 1.21412 0.82088 0.98938 1.11745 1.41167 1.08084 1.05577 1.59403 0.75322 1.19047 0.93767 0.83228 1.08270 1.20176 0.94971 1.00987 0.95613 1.20457 0.80382 0.78263 0.91341 1.43816 1.29070 1.56790 1.12754 1.90847 1.49305 1.52947 1.45621 1.20109 0.92174 0.93023 1.14291 1.17432 0.76701 0.84828 0.83816 1.90814 1.50378 1.67753 1.31439 1.45952 1.69392 1.12539 1.07930 1.22458 0.98695 0.79897 0.97409 0.89562 1.21486 0.86769 0.91730 0.95309 1.44403 1.00356 1.34809 1.53684 1.19021 0.81387 1.17168 1.18539 0.90430 1.24834 0.97879 0.98227 0.99233 1.69991 1.28955 1.23204 1.33912 0.86174 0.84482 0.78543 0.77002 1.21752 1.21645 1.20678 1.21559 0.86321 0.93343 0.97294 1.22612 0.94785 0.98678 0.97328 0.90511 1.21682 0.95832 1.00292 1.01508 0.91475 0.92050 0.91109 0.81511 0.87931 0.86615 0.77276 0.76719 0.77150 0.93336 0.93342 0.93724 0.94169 0.96157 0.92690 0.93330 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 10.35 36.01 0.37 -0.90 16 2 C -0.12 -1.86 6.36 -102.54 -0.65 -2.51 16 3 C -0.01 -0.16 11.82 -16.83 -0.20 -0.35 16 4 N -0.55 -5.50 5.90 -9.11 -0.05 -5.56 16 5 H 0.41 2.57 8.96 -40.82 -0.37 2.21 16 6 C 0.07 0.91 5.67 -81.88 -0.46 0.44 16 7 C -0.08 -0.70 6.01 -29.04 -0.17 -0.87 16 8 C 0.51 6.03 8.09 -10.99 -0.09 5.94 16 9 N -0.86 -6.22 8.87 31.22 0.28 -5.95 16 10 O -0.51 -9.04 16.87 5.56 0.09 -8.94 16 11 C -0.19 -3.02 6.05 -103.35 -0.62 -3.64 16 12 C 0.59 11.33 7.30 -12.60 -0.09 11.24 16 13 O -0.53 -12.78 16.75 5.26 0.09 -12.69 16 14 N -0.71 -12.28 5.10 -53.15 -0.27 -12.55 16 15 C 0.12 2.39 2.78 -66.09 -0.18 2.21 16 16 H 0.09 1.85 7.43 -51.93 -0.39 1.46 16 17 C 0.17 4.43 5.14 -3.06 -0.02 4.41 16 18 N -0.61 -15.85 3.39 -170.07 -0.58 -16.43 16 19 C -0.23 -6.64 10.26 -15.06 -0.15 -6.80 16 20 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 21 C 0.00 -0.14 5.48 -17.43 -0.10 -0.24 16 22 N -0.91 -27.89 10.36 55.49 0.58 -27.32 16 23 Si 0.91 22.64 29.56 -169.99 -5.02 17.62 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 C 0.14 2.92 6.70 -2.53 -0.02 2.90 16 28 C -0.11 -1.92 3.27 -88.47 -0.29 -2.21 16 29 H 0.08 1.24 8.01 -51.93 -0.42 0.82 16 30 C -0.14 -1.76 9.30 37.16 0.35 -1.41 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.12 0.98 8.05 -51.93 -0.42 0.56 16 37 H 0.40 1.42 8.83 -40.82 -0.36 1.06 16 38 H 0.40 2.77 8.93 -40.82 -0.36 2.41 16 39 H 0.39 5.81 8.55 -40.82 -0.35 5.46 16 40 H 0.05 1.46 7.40 -51.93 -0.38 1.07 16 41 H 0.05 1.36 7.40 -51.93 -0.38 0.98 16 42 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.02 0.43 8.04 -51.93 -0.42 0.01 16 45 H 0.05 0.74 8.11 -51.93 -0.42 0.32 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 393.61 15.07 5.93 5.93 Total: -1.00 -40.67 393.61 -8.49 -49.16 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -7.19 Total: 8.51 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: -2.33 Total: 8.21 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: -0.05 Total: -67.80 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: 0.18 Total: -21.64 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -40.67 -8.49 -49.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080482698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.223 kcal (2) G-P(sol) polarization free energy of solvation -40.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds