Wall clock time and date at job start Tue Mar 31 2020 18:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34495 * 126.83039 * 2 1 4 4 N 1.36444 * 108.85094 * 180.26680 * 3 2 1 5 5 H 0.97001 * 124.85381 * 179.73855 * 4 3 2 6 6 C 1.34661 * 110.30322 * 359.70979 * 4 3 2 7 7 C 1.50699 * 125.80378 * 179.97438 * 6 4 3 8 8 C 1.50699 * 109.47438 * 265.02671 * 7 6 4 9 9 N 1.34773 * 120.00297 * 180.02562 * 8 7 6 10 10 O 1.21288 * 119.99721 * 359.97438 * 8 7 6 11 11 C 1.36771 * 108.39360 * 0.02562 * 6 4 3 12 12 C 1.47261 * 126.94134 * 180.02562 * 11 6 4 13 13 O 1.21625 * 120.00201 * 90.00340 * 12 11 6 14 14 N 1.34780 * 119.99812 * 270.00070 * 12 11 6 15 15 C 1.46502 * 119.99751 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46813 * 179.97438 * 15 14 12 17 17 C 1.53781 * 113.61327 * 174.99822 * 16 15 14 18 18 C 1.53781 * 87.08070 * 139.98497 * 17 16 15 19 19 N 1.46506 * 113.61361 * 89.11956 * 18 17 16 20 20 C 1.36932 * 119.99948 * 156.53166 * 19 18 17 21 21 H 1.08003 * 120.00194 * 359.97438 * 20 19 18 22 22 C 1.38815 * 119.99870 * 179.97438 * 20 19 18 23 23 N 1.31617 * 119.99941 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99894 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46920 * 60.00171 * 24 22 20 26 26 H 1.48504 * 109.47206 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47429 * 300.00144 * 24 22 20 28 28 C 1.53773 * 87.17302 * 334.52628 * 18 17 16 29 29 H 1.08998 * 109.47483 * 270.20099 * 1 2 3 30 30 H 1.09005 * 109.47490 * 30.20276 * 1 2 3 31 31 H 1.09006 * 109.47329 * 150.20218 * 1 2 3 32 32 H 1.07993 * 125.57259 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.47158 * 25.03276 * 7 6 4 34 34 H 1.09001 * 109.46677 * 145.02536 * 7 6 4 35 35 H 0.96998 * 119.99944 * 359.97438 * 9 8 7 36 36 H 0.96999 * 120.00187 * 179.97438 * 9 8 7 37 37 H 0.97002 * 120.00271 * 359.97438 * 14 12 11 38 38 H 1.09005 * 109.47329 * 60.00307 * 15 14 12 39 39 H 1.08995 * 109.47088 * 299.99471 * 15 14 12 40 40 H 1.09005 * 112.84988 * 43.80903 * 16 15 14 41 41 H 1.09001 * 113.61537 * 25.43951 * 17 16 15 42 42 H 1.08998 * 113.61680 * 254.53105 * 17 16 15 43 43 H 1.09002 * 113.61408 * 219.93560 * 18 17 16 44 44 H 0.96997 * 119.99707 * 336.52824 * 19 18 17 45 45 H 0.97000 * 119.99576 * 179.97438 * 23 22 20 46 46 H 1.09007 * 113.61678 * 140.01927 * 28 18 17 47 47 H 1.09000 * 113.61916 * 270.92600 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0765 0.0000 4 7 3.6110 0.6554 -0.0060 5 1 4.3839 1.2414 -0.0109 6 6 3.6656 -0.6901 -0.0036 7 6 4.9225 -1.5215 -0.0091 8 6 5.2655 -1.9042 -1.4257 9 7 6.3572 -2.6539 -1.6758 10 8 4.5585 -1.5384 -2.3408 11 6 2.3864 -1.1740 0.0036 12 6 1.9750 -2.5879 0.0090 13 8 1.8099 -3.1693 1.0644 14 7 1.7812 -3.2378 -1.1558 15 6 1.3714 -4.6443 -1.1505 16 6 1.2217 -5.1373 -2.5911 17 6 0.9114 -6.6396 -2.6990 18 6 -0.0616 -6.2771 -3.8332 19 7 0.5625 -6.2591 -5.1586 20 6 -0.2050 -6.4337 -6.2791 21 1 -1.2703 -6.5850 -6.1859 22 6 0.3863 -6.4161 -7.5349 23 7 1.6846 -6.2323 -7.6485 24 14 -0.6605 -6.6549 -9.0636 25 1 -1.6850 -5.5823 -9.1344 26 1 0.2038 -6.5951 -10.2697 27 1 -1.3323 -7.9778 -9.0018 28 6 -0.1763 -4.8863 -3.1874 29 1 -0.3634 0.0036 1.0276 30 1 -0.3634 0.8882 -0.5170 31 1 -0.3634 -0.8918 -0.5107 32 1 1.9867 2.1059 -0.0004 33 1 5.7417 -0.9444 0.4199 34 1 4.7644 -2.4230 0.5828 35 1 6.9224 -2.9468 -0.9439 36 1 6.5778 -2.9006 -2.5876 37 1 1.9124 -2.7741 -1.9976 38 1 0.4176 -4.7429 -0.6322 39 1 2.1265 -5.2408 -0.6386 40 1 2.0379 -4.8127 -3.2366 41 1 0.4200 -7.0485 -1.8161 42 1 1.7609 -7.2385 -3.0273 43 1 -0.9905 -6.8470 -3.8105 44 1 1.5192 -6.1236 -5.2423 45 1 2.0978 -6.2204 -8.5260 46 1 -0.2043 -4.0703 -3.9098 47 1 -0.9646 -4.8165 -2.4378 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091245286.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:22 Heat of formation + Delta-G solvation = -8.146382 kcal Electronic energy + Delta-G solvation = -28804.728077 eV Core-core repulsion = 24795.639751 eV Total energy + Delta-G solvation = -4009.088326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.52906 -39.38909 -39.23697 -38.19076 -34.40273 -33.93945 -33.11065 -32.95480 -31.82776 -30.10592 -28.67430 -27.03256 -26.05626 -24.97035 -23.77909 -22.65083 -21.46020 -21.19797 -19.60312 -19.43965 -18.29012 -18.07565 -17.28903 -17.20992 -16.86907 -16.27244 -15.86592 -15.33977 -15.01253 -14.74502 -14.55765 -14.14119 -13.97713 -13.77905 -13.53982 -13.52122 -13.19139 -12.95103 -12.82727 -12.76680 -12.64094 -12.25427 -12.16322 -11.82809 -11.41869 -11.23621 -10.98117 -10.78592 -10.41740 -10.26665 -10.16307 -10.06940 -9.93296 -9.68363 -9.63040 -9.36978 -8.84559 -8.75974 -8.63295 -8.26853 -6.94462 -5.75759 -3.04435 1.89120 2.37275 2.47714 2.76758 2.97866 3.34231 3.45879 3.49992 3.51102 3.66561 4.24297 4.58496 4.60112 4.72217 4.89312 5.02049 5.08303 5.15947 5.20455 5.29741 5.32963 5.44973 5.50990 5.70175 5.73824 5.79226 5.80537 5.95061 5.97701 6.05477 6.10301 6.20847 6.29666 6.44422 6.51956 6.60099 6.66740 6.71801 6.82821 6.84493 6.99763 7.01783 7.13464 7.31741 7.73056 7.78163 8.00328 8.43493 8.45510 9.53941 10.12370 10.46673 11.46720 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012453 B = 0.002761 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.002151 B =10138.881522 C =10660.253804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.130 4.130 3 C -0.009 4.009 4 N -0.546 5.546 5 H 0.413 0.587 6 C 0.083 3.917 7 C -0.082 4.082 8 C 0.514 3.486 9 N -0.856 5.856 10 O -0.520 6.520 11 C -0.196 4.196 12 C 0.590 3.410 13 O -0.551 6.551 14 N -0.712 5.712 15 C 0.131 3.869 16 C -0.118 4.118 17 C -0.147 4.147 18 C 0.167 3.833 19 N -0.706 5.706 20 C -0.241 4.241 21 H 0.071 0.929 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.908 3.092 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.168 4.168 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.169 0.831 33 H 0.104 0.896 34 H 0.118 0.882 35 H 0.400 0.600 36 H 0.406 0.594 37 H 0.407 0.593 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.066 0.934 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.335 13.871 19.533 25.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.137 4.137 3 C -0.137 4.137 4 N -0.140 5.140 5 H 0.249 0.751 6 C -0.033 4.033 7 C -0.122 4.122 8 C 0.297 3.703 9 N -0.420 5.420 10 O -0.394 6.394 11 C -0.206 4.206 12 C 0.376 3.624 13 O -0.429 6.429 14 N -0.362 5.362 15 C 0.007 3.993 16 C -0.137 4.137 17 C -0.187 4.187 18 C 0.055 3.945 19 N -0.345 5.345 20 C -0.373 4.373 21 H 0.089 0.911 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.739 3.261 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.209 4.209 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.186 0.814 33 H 0.122 0.878 34 H 0.136 0.864 35 H 0.228 0.772 36 H 0.237 0.763 37 H 0.242 0.758 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.085 0.915 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.598 13.819 19.628 25.498 hybrid contribution 0.762 0.282 -1.301 1.533 sum 9.360 14.101 18.328 24.947 Atomic orbital electron populations 1.20141 0.89557 1.02425 1.01782 1.20414 0.95201 0.90349 1.07699 1.21438 0.82096 0.99012 1.11156 1.41213 1.08236 1.05645 1.58870 0.75054 1.19065 0.93830 0.83248 1.07194 1.20238 0.95040 1.01203 0.95761 1.20419 0.80658 0.78167 0.91043 1.43832 1.28790 1.56246 1.13148 1.90835 1.49168 1.53183 1.46241 1.19988 0.92357 0.92792 1.15473 1.17487 0.76354 0.84986 0.83607 1.90759 1.52089 1.68688 1.31356 1.46152 1.68501 1.12767 1.08825 1.21467 0.99774 0.80589 0.97441 1.22737 0.99444 0.97566 0.93935 1.23418 1.00930 0.94455 0.99850 1.21055 0.94824 0.93318 0.85291 1.42161 1.07730 1.85274 0.99293 1.19248 0.91557 1.41559 0.84896 0.91066 1.24753 0.95828 1.02718 0.97576 1.69655 1.08770 1.56645 1.23026 0.86250 0.79120 0.77973 0.82738 1.21218 1.21717 1.21243 1.23919 0.94633 1.02461 0.99854 0.91735 0.91695 0.91765 0.81367 0.87753 0.86431 0.77181 0.76273 0.75764 0.91641 0.92129 0.88978 0.90473 0.91457 0.92117 0.78119 0.93453 0.91487 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.35 36.00 0.37 -0.51 16 2 C -0.13 -1.58 6.36 -102.54 -0.65 -2.23 16 3 C -0.01 -0.08 11.82 -16.82 -0.20 -0.28 16 4 N -0.55 -4.66 5.90 -9.11 -0.05 -4.72 16 5 H 0.41 2.10 8.96 -40.82 -0.37 1.73 16 6 C 0.08 0.91 5.67 -81.88 -0.46 0.44 16 7 C -0.08 -0.66 6.01 -29.04 -0.17 -0.83 16 8 C 0.51 5.22 8.09 -10.99 -0.09 5.13 16 9 N -0.86 -5.69 8.87 31.22 0.28 -5.42 16 10 O -0.52 -7.77 16.87 5.55 0.09 -7.67 16 11 C -0.20 -2.69 6.05 -103.35 -0.62 -3.31 16 12 C 0.59 9.27 7.30 -12.59 -0.09 9.18 16 13 O -0.55 -10.20 17.11 5.26 0.09 -10.11 16 14 N -0.71 -10.70 5.55 -61.43 -0.34 -11.04 16 15 C 0.13 1.96 5.51 -4.04 -0.02 1.94 16 16 C -0.12 -1.93 3.65 -89.67 -0.33 -2.26 16 17 C -0.15 -2.47 7.38 -25.92 -0.19 -2.66 16 18 C 0.17 3.40 4.55 -67.12 -0.31 3.09 16 19 N -0.71 -17.95 5.31 -52.64 -0.28 -18.23 16 20 C -0.24 -6.79 9.97 -15.06 -0.15 -6.94 16 21 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 23 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 24 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 C -0.17 -3.01 7.45 -25.78 -0.19 -3.20 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16 33 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.12 0.95 8.05 -51.93 -0.42 0.53 16 35 H 0.40 1.29 8.83 -40.82 -0.36 0.93 16 36 H 0.41 2.80 8.93 -40.82 -0.36 2.43 16 37 H 0.41 6.30 8.46 -40.82 -0.35 5.96 16 38 H 0.07 1.00 7.85 -51.93 -0.41 0.59 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 41 H 0.08 1.13 8.10 -51.93 -0.42 0.70 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.06 1.23 8.11 -51.93 -0.42 0.81 16 44 H 0.38 10.36 7.90 -40.82 -0.32 10.04 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 47 H 0.07 1.09 7.90 -51.93 -0.41 0.68 16 LS Contribution 401.62 15.07 6.05 6.05 Total: -1.00 -37.45 401.62 -8.85 -46.30 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: -7.19 Total: 17.82 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -3.21 Total: -2.91 kcal Atomic # 7 Polarization: -67.38 SS G_CDS: 0.33 Total: -67.05 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: 0.18 Total: -17.78 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -37.45 -8.85 -46.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091245286.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.154 kcal (2) G-P(sol) polarization free energy of solvation -37.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds