Wall clock time and date at job start Tue Mar 31 2020 18:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34495 * 126.83039 * 2 1 4 4 N 1.36444 * 108.85094 * 180.26680 * 3 2 1 5 5 H 0.97001 * 124.85381 * 179.73855 * 4 3 2 6 6 C 1.34661 * 110.30322 * 359.70979 * 4 3 2 7 7 C 1.50699 * 125.80378 * 179.97438 * 6 4 3 8 8 C 1.50699 * 109.47438 * 265.02671 * 7 6 4 9 9 N 1.34773 * 120.00297 * 180.02562 * 8 7 6 10 10 O 1.21288 * 119.99721 * 359.97438 * 8 7 6 11 11 C 1.36771 * 108.39360 * 0.02562 * 6 4 3 12 12 C 1.47261 * 126.94134 * 180.02562 * 11 6 4 13 13 O 1.21625 * 120.00201 * 90.00340 * 12 11 6 14 14 N 1.34780 * 119.99812 * 270.00070 * 12 11 6 15 15 C 1.46502 * 119.99751 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46813 * 179.97438 * 15 14 12 17 17 C 1.53781 * 113.61327 * 174.99822 * 16 15 14 18 18 C 1.53781 * 87.08070 * 139.98497 * 17 16 15 19 19 N 1.46506 * 113.61361 * 89.11956 * 18 17 16 20 20 C 1.36932 * 119.99948 * 156.53166 * 19 18 17 21 21 H 1.08003 * 120.00194 * 359.97438 * 20 19 18 22 22 C 1.38815 * 119.99870 * 179.97438 * 20 19 18 23 23 N 1.31617 * 119.99941 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99894 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46920 * 60.00171 * 24 22 20 26 26 H 1.48504 * 109.47206 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47429 * 300.00144 * 24 22 20 28 28 C 1.53773 * 87.17302 * 334.52628 * 18 17 16 29 29 H 1.08998 * 109.47483 * 270.20099 * 1 2 3 30 30 H 1.09005 * 109.47490 * 30.20276 * 1 2 3 31 31 H 1.09006 * 109.47329 * 150.20218 * 1 2 3 32 32 H 1.07993 * 125.57259 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.47158 * 25.03276 * 7 6 4 34 34 H 1.09001 * 109.46677 * 145.02536 * 7 6 4 35 35 H 0.96998 * 119.99944 * 359.97438 * 9 8 7 36 36 H 0.96999 * 120.00187 * 179.97438 * 9 8 7 37 37 H 0.97002 * 120.00271 * 359.97438 * 14 12 11 38 38 H 1.09005 * 109.47329 * 60.00307 * 15 14 12 39 39 H 1.08995 * 109.47088 * 299.99471 * 15 14 12 40 40 H 1.09005 * 112.84988 * 43.80903 * 16 15 14 41 41 H 1.09001 * 113.61537 * 25.43951 * 17 16 15 42 42 H 1.08998 * 113.61680 * 254.53105 * 17 16 15 43 43 H 1.09002 * 113.61408 * 219.93560 * 18 17 16 44 44 H 0.96997 * 119.99707 * 336.52824 * 19 18 17 45 45 H 0.97000 * 119.99576 * 179.97438 * 23 22 20 46 46 H 1.09007 * 113.61678 * 140.01927 * 28 18 17 47 47 H 1.09000 * 113.61916 * 270.92600 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0765 0.0000 4 7 3.6110 0.6554 -0.0060 5 1 4.3839 1.2414 -0.0109 6 6 3.6656 -0.6901 -0.0036 7 6 4.9225 -1.5215 -0.0091 8 6 5.2655 -1.9042 -1.4257 9 7 6.3572 -2.6539 -1.6758 10 8 4.5585 -1.5384 -2.3408 11 6 2.3864 -1.1740 0.0036 12 6 1.9750 -2.5879 0.0090 13 8 1.8099 -3.1693 1.0644 14 7 1.7812 -3.2378 -1.1558 15 6 1.3714 -4.6443 -1.1505 16 6 1.2217 -5.1373 -2.5911 17 6 0.9114 -6.6396 -2.6990 18 6 -0.0616 -6.2771 -3.8332 19 7 0.5625 -6.2591 -5.1586 20 6 -0.2050 -6.4337 -6.2791 21 1 -1.2703 -6.5850 -6.1859 22 6 0.3863 -6.4161 -7.5349 23 7 1.6846 -6.2323 -7.6485 24 14 -0.6605 -6.6549 -9.0636 25 1 -1.6850 -5.5823 -9.1344 26 1 0.2038 -6.5951 -10.2697 27 1 -1.3323 -7.9778 -9.0018 28 6 -0.1763 -4.8863 -3.1874 29 1 -0.3634 0.0036 1.0276 30 1 -0.3634 0.8882 -0.5170 31 1 -0.3634 -0.8918 -0.5107 32 1 1.9867 2.1059 -0.0004 33 1 5.7417 -0.9444 0.4199 34 1 4.7644 -2.4230 0.5828 35 1 6.9224 -2.9468 -0.9439 36 1 6.5778 -2.9006 -2.5876 37 1 1.9124 -2.7741 -1.9976 38 1 0.4176 -4.7429 -0.6322 39 1 2.1265 -5.2408 -0.6386 40 1 2.0379 -4.8127 -3.2366 41 1 0.4200 -7.0485 -1.8161 42 1 1.7609 -7.2385 -3.0273 43 1 -0.9905 -6.8470 -3.8105 44 1 1.5192 -6.1236 -5.2423 45 1 2.0978 -6.2204 -8.5260 46 1 -0.2043 -4.0703 -3.9098 47 1 -0.9646 -4.8165 -2.4378 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091245286.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:21 Heat of formation + Delta-G solvation = -38.297463 kcal Electronic energy + Delta-G solvation = -28806.035526 eV Core-core repulsion = 24795.639751 eV Total energy + Delta-G solvation = -4010.395775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.32736 -40.58160 -40.17690 -39.60084 -35.94251 -34.89354 -34.69397 -33.73809 -32.66793 -31.99173 -29.67477 -28.32245 -26.83296 -26.45463 -25.72473 -23.90489 -22.75699 -22.00902 -20.65688 -20.34753 -19.66755 -19.30044 -18.88528 -17.96334 -17.62288 -17.30789 -17.15068 -16.66896 -16.26526 -16.11765 -15.69607 -15.57887 -15.34461 -14.87362 -14.69145 -14.55993 -14.47631 -14.15305 -14.10163 -13.69305 -13.53861 -13.39554 -13.28344 -13.04139 -12.92460 -12.91604 -12.61440 -12.20638 -12.18766 -12.08283 -11.59661 -11.50062 -11.12433 -11.09643 -10.91540 -10.75464 -10.63988 -10.03743 -9.48467 -9.04337 -9.00649 -7.95184 -5.23897 1.08250 1.46982 1.50295 1.56204 1.59706 1.62057 1.64622 2.24438 2.48867 2.55764 2.78406 3.36984 3.54518 3.70039 3.77463 3.82117 3.99259 4.09828 4.15568 4.18015 4.26017 4.31073 4.39866 4.40152 4.55836 4.64530 4.72474 4.76431 4.88370 4.91048 4.96892 4.99374 5.10144 5.14214 5.26757 5.30141 5.34480 5.48739 5.55168 5.65056 5.84362 5.87613 6.02721 6.27968 6.45186 6.55032 6.72203 7.24081 7.32682 7.34819 8.09723 8.32398 9.28061 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012453 B = 0.002761 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.002151 B =10138.881522 C =10660.253804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.166 4.166 3 C 0.006 3.994 4 N -0.531 5.531 5 H 0.432 0.568 6 C 0.085 3.915 7 C -0.078 4.078 8 C 0.511 3.489 9 N -0.839 5.839 10 O -0.576 6.576 11 C -0.241 4.241 12 C 0.595 3.405 13 O -0.585 6.585 14 N -0.709 5.709 15 C 0.139 3.861 16 C -0.102 4.102 17 C -0.129 4.129 18 C 0.146 3.854 19 N -0.720 5.720 20 C -0.245 4.245 21 H 0.077 0.923 22 C -0.075 4.075 23 N -0.970 5.970 24 Si 0.974 3.026 25 H -0.279 1.279 26 H -0.295 1.295 27 H -0.276 1.276 28 C -0.155 4.155 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.205 0.795 33 H 0.150 0.850 34 H 0.118 0.882 35 H 0.419 0.581 36 H 0.406 0.594 37 H 0.404 0.596 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.109 0.891 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.373 0.627 45 H 0.251 0.749 46 H 0.041 0.959 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.700 14.935 20.941 27.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.172 4.172 3 C -0.123 4.123 4 N -0.127 5.127 5 H 0.272 0.728 6 C -0.033 4.033 7 C -0.119 4.119 8 C 0.295 3.705 9 N -0.403 5.403 10 O -0.455 6.455 11 C -0.251 4.251 12 C 0.382 3.618 13 O -0.466 6.466 14 N -0.359 5.359 15 C 0.016 3.984 16 C -0.121 4.121 17 C -0.168 4.168 18 C 0.036 3.964 19 N -0.358 5.358 20 C -0.377 4.377 21 H 0.095 0.905 22 C -0.267 4.267 23 N -0.620 5.620 24 Si 0.803 3.197 25 H -0.205 1.205 26 H -0.222 1.222 27 H -0.202 1.202 28 C -0.196 4.196 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.222 0.778 33 H 0.167 0.833 34 H 0.136 0.864 35 H 0.250 0.750 36 H 0.237 0.763 37 H 0.239 0.761 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.128 0.872 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.205 0.795 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.986 14.876 21.098 27.335 hybrid contribution 0.671 -0.035 -1.664 1.795 sum 9.657 14.841 19.434 26.291 Atomic orbital electron populations 1.20114 0.89372 1.02241 1.01844 1.20708 0.95892 0.90829 1.09794 1.21950 0.81848 0.99901 1.08599 1.41255 1.08914 1.05138 1.57355 0.72825 1.19370 0.93898 0.84371 1.05663 1.20334 0.95429 1.01577 0.94540 1.20784 0.80597 0.77816 0.91296 1.43731 1.27914 1.54714 1.13950 1.90817 1.51127 1.55619 1.47900 1.20070 0.94293 0.92011 1.18763 1.17799 0.75289 0.85808 0.82883 1.90721 1.53793 1.69753 1.32326 1.46163 1.68247 1.12689 1.08758 1.21351 1.00144 0.80814 0.96108 1.22501 0.97802 0.97402 0.94385 1.23313 0.99747 0.94518 0.99255 1.21372 0.95678 0.95039 0.84323 1.42306 1.07136 1.85673 1.00726 1.19654 0.92070 1.39996 0.85988 0.90520 1.25575 0.97019 1.03545 1.00592 1.69817 1.10430 1.58553 1.23197 0.85202 0.77485 0.78245 0.78775 1.20503 1.22158 1.20219 1.23776 0.96430 0.99773 0.99608 0.91571 0.89712 0.94037 0.77795 0.83258 0.86357 0.75008 0.76294 0.76083 0.91297 0.91556 0.91052 0.87240 0.92185 0.91959 0.79492 0.94027 0.94030 0.88935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.69 10.35 71.23 0.74 -0.95 16 2 C -0.17 -3.93 6.36 -18.52 -0.12 -4.05 16 3 C 0.01 0.10 11.82 83.12 0.98 1.09 16 4 N -0.53 -7.81 5.90 -182.72 -1.08 -8.89 16 5 H 0.43 3.00 8.96 -92.71 -0.83 2.17 16 6 C 0.08 1.74 5.67 41.78 0.24 1.98 16 7 C -0.08 -1.12 6.01 29.10 0.17 -0.94 16 8 C 0.51 9.89 8.09 87.66 0.71 10.60 16 9 N -0.84 -10.04 8.87 -173.53 -1.54 -11.58 16 10 O -0.58 -17.35 16.87 -3.05 -0.05 -17.40 16 11 C -0.24 -6.58 6.05 -19.04 -0.12 -6.69 16 12 C 0.59 18.92 7.30 86.61 0.63 19.55 16 13 O -0.58 -21.87 17.11 -4.11 -0.07 -21.94 16 14 N -0.71 -21.67 5.55 -466.52 -2.59 -24.26 16 15 C 0.14 4.10 5.51 86.38 0.48 4.58 16 16 C -0.10 -3.33 3.65 -10.18 -0.04 -3.37 16 17 C -0.13 -4.20 7.38 31.12 0.23 -3.97 16 18 C 0.15 5.90 4.55 45.51 0.21 6.11 16 19 N -0.72 -37.34 5.31 -320.45 -1.70 -39.04 16 20 C -0.25 -13.94 9.97 84.04 0.84 -13.11 16 21 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 22 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 23 N -0.97 -60.34 13.06 21.65 0.28 -60.06 16 24 Si 0.97 46.89 29.55 68.60 2.03 48.92 16 25 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 26 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 27 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 28 C -0.16 -5.54 7.45 31.21 0.23 -5.31 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.21 1.72 8.06 -2.91 -0.02 1.70 16 33 H 0.15 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.12 1.72 8.05 -2.39 -0.02 1.70 16 35 H 0.42 1.80 8.83 -92.71 -0.82 0.99 16 36 H 0.41 5.28 8.93 -92.71 -0.83 4.46 16 37 H 0.40 13.01 8.46 -92.71 -0.78 12.22 16 38 H 0.07 2.02 7.85 -2.38 -0.02 2.00 16 39 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 41 H 0.11 2.89 8.10 -2.39 -0.02 2.88 16 42 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.06 2.48 8.11 -2.39 -0.02 2.47 16 44 H 0.37 20.76 7.90 -92.71 -0.73 20.03 16 45 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 46 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 47 H 0.09 2.85 7.90 -2.39 -0.02 2.83 16 Total: -1.00 -83.92 401.62 -2.01 -85.92 By element: Atomic # 1 Polarization: 49.68 SS G_CDS: -2.94 Total: 46.74 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 5.65 Total: 1.59 kcal Atomic # 7 Polarization: -137.20 SS G_CDS: -6.63 Total: -143.83 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -0.12 Total: -39.34 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -83.92 -2.01 -85.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091245286.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.627 kcal (2) G-P(sol) polarization free energy of solvation -83.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds