Wall clock time and date at job start Tue Mar 31 2020 19:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35366 * 127.24725 * 2 1 4 4 N 1.35035 * 107.23064 * 180.02562 * 3 2 1 5 5 H 0.96995 * 124.89028 * 180.02562 * 4 3 2 6 6 N 1.28473 * 110.22584 * 359.72464 * 4 3 2 7 7 C 1.31805 * 110.07230 * 0.45984 * 6 4 3 8 8 C 1.47715 * 126.51656 * 179.82355 * 7 6 4 9 9 O 1.21572 * 119.99929 * 173.30877 * 8 7 6 10 10 N 1.34781 * 120.00004 * 353.30527 * 8 7 6 11 11 C 1.46927 * 120.62898 * 353.04522 * 10 8 7 12 12 C 1.53195 * 108.77541 * 233.58691 * 11 10 8 13 13 C 1.53046 * 109.30971 * 305.36676 * 12 11 10 14 14 O 1.42900 * 109.45568 * 181.38533 * 13 12 11 15 15 C 1.42897 * 113.99773 * 149.99935 * 14 13 12 16 16 C 1.53498 * 114.21117 * 209.99873 * 15 14 13 17 17 N 1.47068 * 87.99021 * 220.14784 * 16 15 14 18 18 C 1.36931 * 136.05887 * 206.86072 * 17 16 15 19 19 H 1.07997 * 120.00122 * 359.97438 * 18 17 16 20 20 C 1.38814 * 120.00209 * 179.97438 * 18 17 16 21 21 N 1.31619 * 119.99463 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 120.00051 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47369 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.47371 * 119.99968 * 22 20 18 25 25 H 1.48496 * 109.47469 * 239.99805 * 22 20 18 26 26 C 1.47074 * 87.88317 * 27.11539 * 17 16 15 27 27 C 1.53038 * 109.53875 * 61.36241 * 13 12 11 28 28 C 1.46921 * 120.62905 * 173.02070 * 10 8 7 29 29 H 1.09007 * 109.46997 * 270.00267 * 1 2 3 30 30 H 1.09000 * 109.47489 * 29.99576 * 1 2 3 31 31 H 1.08995 * 109.47375 * 150.00154 * 1 2 3 32 32 H 1.08001 * 126.38881 * 0.02562 * 3 2 1 33 33 H 1.08997 * 109.59036 * 113.80068 * 11 10 8 34 34 H 1.09005 * 109.70345 * 353.44171 * 11 10 8 35 35 H 1.08993 * 109.49770 * 185.41532 * 12 11 10 36 36 H 1.09002 * 109.49644 * 65.31270 * 12 11 10 37 37 H 1.08997 * 109.45759 * 301.35656 * 13 12 11 38 38 H 1.09008 * 113.28429 * 343.06531 * 15 14 13 39 39 H 1.09002 * 113.46929 * 105.36408 * 16 15 14 40 40 H 1.09007 * 113.51384 * 334.93334 * 16 15 14 41 41 H 0.97005 * 119.99594 * 180.02562 * 21 20 18 42 42 H 1.09001 * 113.46731 * 87.66237 * 26 17 16 43 43 H 1.08997 * 113.46465 * 218.09942 * 26 17 16 44 44 H 1.09003 * 109.49772 * 58.58694 * 27 13 12 45 45 H 1.08998 * 109.49340 * 178.68084 * 27 13 12 46 46 H 1.09002 * 109.58562 * 246.20049 * 28 10 8 47 47 H 1.08994 * 109.59206 * 6.48315 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0776 0.0000 4 7 3.5951 0.6153 -0.0006 5 1 4.3887 1.1730 -0.0004 6 7 3.5998 -0.6694 0.0049 7 6 2.3635 -1.1263 -0.0007 8 6 1.9505 -2.5445 -0.0008 9 8 0.7760 -2.8357 0.1164 10 7 2.8758 -3.5158 -0.1310 11 6 4.2759 -3.1813 -0.4253 12 6 4.7213 -3.9678 -1.6622 13 6 4.4663 -5.4593 -1.4324 14 8 4.9104 -6.1991 -2.5715 15 6 5.3586 -7.5213 -2.2670 16 6 6.4489 -8.0492 -3.2098 17 7 5.7732 -9.3550 -3.1762 18 6 6.1466 -10.6628 -3.3352 19 1 7.1777 -10.9086 -3.5418 20 6 5.1999 -11.6726 -3.2308 21 7 3.9433 -11.3729 -2.9785 22 14 5.7092 -13.4565 -3.4483 23 1 7.1672 -13.5253 -3.7211 24 1 5.4018 -14.2138 -2.2084 25 1 4.9635 -14.0488 -4.5877 26 6 4.5187 -8.6376 -2.9031 27 6 2.9690 -5.6961 -1.2227 28 6 2.5037 -4.9292 0.0192 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5138 32 1 2.0220 2.1138 0.0004 33 1 4.9026 -3.4514 0.4246 34 1 4.3653 -2.1125 -0.6202 35 1 5.7848 -3.8029 -1.8347 36 1 4.1549 -3.6315 -2.5306 37 1 5.0132 -5.7893 -0.5492 38 1 5.5724 -7.6708 -1.2086 39 1 7.4420 -8.0626 -2.7607 40 1 6.4376 -7.5799 -4.1936 41 1 3.2818 -12.0786 -2.9052 42 1 3.9924 -8.3246 -3.8049 43 1 3.8706 -9.1514 -2.1932 44 1 2.4191 -5.3435 -2.0952 45 1 2.7854 -6.7614 -1.0824 46 1 2.9858 -5.3418 0.9054 47 1 1.4216 -5.0136 0.1192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093534395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:25 Heat of formation + Delta-G solvation = 68.155814 kcal Electronic energy + Delta-G solvation = -28770.921637 eV Core-core repulsion = 24765.142023 eV Total energy + Delta-G solvation = -4005.779614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.07862 -40.05086 -38.70227 -37.33455 -35.46763 -33.37280 -32.57713 -32.02671 -31.23305 -30.67737 -27.55436 -27.40894 -25.55069 -24.53727 -23.88319 -23.00221 -22.79762 -21.22504 -20.59852 -19.59832 -19.11968 -18.31897 -17.28933 -16.77903 -16.32432 -16.24294 -15.96476 -15.04126 -14.89096 -14.56172 -14.50406 -14.14116 -13.77743 -13.69278 -13.63255 -13.42190 -13.19047 -13.00876 -12.92242 -12.56205 -12.11132 -11.95600 -11.89796 -11.68785 -11.29419 -11.18666 -11.05283 -10.91190 -10.85216 -10.56749 -10.36092 -10.21401 -10.09154 -9.96426 -9.72925 -9.45331 -9.21394 -8.81016 -8.74301 -8.56400 -6.88706 -5.76762 -3.09982 1.24072 1.74965 2.41624 2.90134 3.18380 3.39559 3.44157 3.47477 3.96386 4.11060 4.39419 4.49951 4.64062 4.84643 4.91314 4.98314 5.08350 5.16075 5.24907 5.28081 5.33420 5.47628 5.49078 5.53080 5.54337 5.58840 5.70275 5.72049 5.78996 5.80613 5.86915 5.95122 6.00823 6.18004 6.22223 6.35437 6.45932 6.48367 6.63031 6.66508 6.68803 7.13719 7.22770 7.24507 7.48858 7.54529 7.91448 7.99673 8.03790 9.03666 9.69657 10.63764 11.40861 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.030823 B = 0.002104 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.196648 B =13301.652362 C =13963.043001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.145 4.145 3 C -0.017 4.017 4 N -0.385 5.385 5 H 0.446 0.554 6 N -0.258 5.258 7 C -0.006 4.006 8 C 0.602 3.398 9 O -0.531 6.531 10 N -0.599 5.599 11 C 0.090 3.910 12 C -0.130 4.130 13 C 0.092 3.908 14 O -0.370 6.370 15 C 0.030 3.970 16 C 0.118 3.882 17 N -0.607 5.607 18 C -0.216 4.216 19 H 0.083 0.917 20 C -0.009 4.009 21 N -0.918 5.918 22 Si 0.915 3.085 23 H -0.279 1.279 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.143 3.857 27 C -0.156 4.156 28 C 0.114 3.886 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.184 0.816 33 H 0.067 0.933 34 H 0.128 0.872 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.085 0.915 39 H 0.041 0.959 40 H 0.040 0.960 41 H 0.254 0.746 42 H 0.031 0.969 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.070 0.930 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.916 28.747 8.810 30.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.155 4.155 3 C -0.162 4.162 4 N -0.098 5.098 5 H 0.291 0.709 6 N -0.094 5.094 7 C -0.166 4.166 8 C 0.388 3.612 9 O -0.406 6.406 10 N -0.331 5.331 11 C -0.033 4.033 12 C -0.169 4.169 13 C 0.034 3.966 14 O -0.287 6.287 15 C -0.029 4.029 16 C -0.009 4.009 17 N -0.335 5.335 18 C -0.343 4.343 19 H 0.101 0.899 20 C -0.206 4.206 21 N -0.565 5.565 22 Si 0.745 3.255 23 H -0.204 1.204 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.017 3.983 27 C -0.194 4.194 28 C -0.008 4.008 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.201 0.799 33 H 0.086 0.914 34 H 0.145 0.855 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.104 0.896 46 H 0.088 0.912 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.524 27.916 8.680 29.274 hybrid contribution -0.001 -0.504 -0.070 0.509 sum -1.525 27.412 8.610 28.772 Atomic orbital electron populations 1.20176 0.87939 1.03085 1.02516 1.20409 0.97707 0.90370 1.07061 1.22718 0.84124 1.00583 1.08733 1.43398 1.08649 1.04647 1.53076 0.70915 1.73372 1.22670 0.93501 1.19859 1.21911 0.89433 0.95121 1.10130 1.16966 0.85038 0.82579 0.76610 1.90771 1.16822 1.82350 1.50680 1.47982 1.09358 1.06399 1.69397 1.22449 0.80548 1.03289 0.97006 1.22007 1.02387 0.94036 0.98441 1.22032 0.93605 0.91533 0.89453 1.87918 1.82793 1.26568 1.31469 1.24758 0.98683 0.80932 0.98531 1.22597 0.94817 0.86803 0.96647 1.45267 1.05347 0.99490 1.83371 1.18951 0.93976 0.79086 1.42291 0.89884 1.24840 0.95437 0.98122 1.02205 1.69854 1.00775 1.31338 1.54557 0.85994 0.77625 0.84446 0.77389 1.20385 1.21638 1.21669 1.22530 0.90875 0.87659 0.97244 1.22464 0.97207 1.01495 0.98269 1.21674 1.02445 0.78796 0.97837 0.91305 0.91918 0.89977 0.79868 0.91448 0.85520 0.90078 0.90954 0.92319 0.89726 0.94089 0.94202 0.93618 0.95078 0.91113 0.90692 0.89614 0.91163 0.88526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 9.88 36.00 0.36 -0.30 16 2 C -0.15 -1.33 6.25 -104.41 -0.65 -1.99 16 3 C -0.02 -0.10 11.97 -17.17 -0.21 -0.30 16 4 N -0.38 -2.14 6.83 30.47 0.21 -1.93 16 5 H 0.45 0.72 8.96 -190.44 -1.71 -0.99 16 6 N -0.26 -2.35 8.71 33.42 0.29 -2.06 16 7 C -0.01 -0.06 6.83 -82.77 -0.57 -0.63 16 8 C 0.60 8.11 7.69 -12.39 -0.10 8.01 16 9 O -0.53 -8.37 14.63 5.30 0.08 -8.29 16 10 N -0.60 -7.40 2.97 -173.93 -0.52 -7.92 16 11 C 0.09 0.95 6.11 -3.71 -0.02 0.93 16 12 C -0.13 -1.54 5.73 -26.61 -0.15 -1.69 16 13 C 0.09 1.30 2.56 -26.69 -0.07 1.23 16 14 O -0.37 -6.61 10.05 -35.23 -0.35 -6.96 16 15 C 0.03 0.59 4.61 -26.22 -0.12 0.47 16 16 C 0.12 2.58 8.52 -8.50 -0.07 2.51 16 17 N -0.61 -16.29 3.78 -184.76 -0.70 -16.99 16 18 C -0.22 -6.22 10.75 -15.06 -0.16 -6.38 16 19 H 0.08 2.29 7.83 -52.49 -0.41 1.88 16 20 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 21 N -0.92 -27.82 11.51 55.49 0.64 -27.19 16 22 Si 0.92 22.41 29.55 -169.99 -5.02 17.39 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 C 0.14 3.54 7.25 -8.50 -0.06 3.47 16 27 C -0.16 -2.17 5.69 -26.61 -0.15 -2.32 16 28 C 0.11 1.42 6.44 -3.71 -0.02 1.40 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.87 6.86 -51.93 -0.36 0.51 16 32 H 0.18 0.32 8.06 -52.49 -0.42 -0.10 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.13 1.27 4.18 -69.67 -0.29 0.98 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.78 7.43 -51.93 -0.39 0.40 16 38 H 0.08 1.61 7.47 -51.92 -0.39 1.22 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.04 0.87 8.14 -51.92 -0.42 0.45 16 41 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 1.89 7.12 -51.93 -0.37 1.52 16 44 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.10 1.27 7.00 -51.93 -0.36 0.91 16 LS Contribution 377.91 15.07 5.69 5.69 Total: -1.00 -35.74 377.91 -10.26 -46.00 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -8.48 Total: -1.79 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -2.09 Total: 4.05 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.08 Total: -56.08 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.28 Total: -15.26 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.74 -10.26 -46.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093534395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.156 kcal (2) G-P(sol) polarization free energy of solvation -35.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds