Wall clock time and date at job start Tue Mar 31 2020 18:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35558 * 125.82059 * 2 1 4 4 N 1.35406 * 107.15863 * 179.97438 * 3 2 1 5 5 H 0.97001 * 126.43814 * 180.26418 * 4 3 2 6 6 C 1.36667 * 107.12222 * 0.02562 * 4 3 2 7 7 C 1.47406 * 125.86328 * 180.02562 * 6 4 3 8 8 O 1.21595 * 120.00361 * 353.39579 * 7 6 4 9 9 N 1.34778 * 119.99710 * 173.39766 * 7 6 4 10 10 C 1.46929 * 120.63065 * 3.93873 * 9 7 6 11 11 C 1.52757 * 109.00638 * 233.58276 * 10 9 7 12 12 C 1.53036 * 109.38492 * 305.58722 * 11 10 9 13 13 O 1.42901 * 109.46113 * 181.26134 * 12 11 10 14 14 C 1.42901 * 114.00406 * 89.93188 * 13 12 11 15 15 C 1.53945 * 113.74374 * 248.74342 * 14 13 12 16 16 N 1.47812 * 86.03325 * 222.07898 * 15 14 13 17 17 C 1.36936 * 134.45129 * 204.64043 * 16 15 14 18 18 H 1.08008 * 119.99681 * 179.87368 * 17 16 15 19 19 C 1.38804 * 120.00363 * 359.86960 * 17 16 15 20 20 N 1.31622 * 120.00107 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00282 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46891 * 60.00163 * 21 19 17 23 23 H 1.48496 * 109.47519 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47197 * 300.00739 * 21 19 17 25 25 C 1.47576 * 91.05199 * 24.55299 * 16 15 14 26 26 C 1.53040 * 109.53727 * 61.24127 * 12 11 10 27 27 C 1.46928 * 120.62860 * 184.21509 * 9 7 6 28 28 N 1.31618 * 108.27189 * 359.97438 * 6 4 3 29 29 H 1.09004 * 109.46901 * 269.99416 * 1 2 3 30 30 H 1.08995 * 109.47184 * 29.99720 * 1 2 3 31 31 H 1.09000 * 109.46972 * 149.99409 * 1 2 3 32 32 H 1.07999 * 126.42517 * 0.02562 * 3 2 1 33 33 H 1.08994 * 109.58643 * 353.41852 * 10 9 7 34 34 H 1.09006 * 109.58428 * 113.84219 * 10 9 7 35 35 H 1.09005 * 109.56632 * 185.55414 * 11 10 9 36 36 H 1.09000 * 109.35986 * 65.50386 * 11 10 9 37 37 H 1.08993 * 109.45313 * 301.22593 * 12 11 10 38 38 H 1.09005 * 112.93838 * 20.33341 * 14 13 12 39 39 H 1.08997 * 113.77096 * 336.34451 * 15 14 13 40 40 H 1.09003 * 113.76603 * 107.74104 * 15 14 13 41 41 H 0.96997 * 120.00158 * 179.97438 * 20 19 17 42 42 H 1.09007 * 113.76461 * 221.14991 * 25 16 15 43 43 H 1.08994 * 113.77646 * 89.75263 * 25 16 15 44 44 H 1.09003 * 109.50057 * 178.68202 * 26 12 11 45 45 H 1.08997 * 109.52560 * 58.60367 * 26 12 11 46 46 H 1.09001 * 109.58542 * 246.15411 * 27 9 7 47 47 H 1.08996 * 109.58533 * 6.44234 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3004 1.0992 0.0000 4 7 3.5833 0.6659 0.0006 5 1 4.3788 1.2209 0.0043 6 6 3.5466 -0.7003 0.0003 7 6 4.7175 -1.5957 0.0013 8 8 5.8360 -1.1340 -0.1187 9 7 4.5484 -2.9261 0.1352 10 6 3.2002 -3.5070 0.1946 11 6 3.0853 -4.3704 1.4495 12 6 4.2157 -5.4019 1.4616 13 8 4.0927 -6.2295 2.6200 14 6 3.2911 -7.3954 2.4191 15 6 1.9550 -7.3683 3.1833 16 7 2.2255 -8.7864 3.5005 17 6 1.4432 -9.8631 3.8229 18 1 1.8985 -10.8238 4.0132 19 6 0.0650 -9.7198 3.9050 20 7 -0.4900 -8.5492 3.6727 21 14 -1.0023 -11.1887 4.3440 22 1 -0.6143 -11.6999 5.6832 23 1 -2.4285 -10.7756 4.3655 24 1 -0.8125 -12.2586 3.3319 25 6 3.6761 -8.5765 3.3283 26 6 5.5657 -4.6816 1.4907 27 6 5.7087 -3.8223 0.2305 28 7 2.2861 -1.0792 0.0002 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5139 32 1 1.9711 2.1277 0.0004 33 1 2.4595 -2.7084 0.2331 34 1 3.0292 -4.1245 -0.6873 35 1 2.1240 -4.8842 1.4525 36 1 3.1620 -3.7362 2.3327 37 1 4.1530 -6.0197 0.5658 38 1 3.1901 -7.6655 1.3679 39 1 1.9608 -6.7142 4.0552 40 1 1.0857 -7.2181 2.5431 41 1 -1.4531 -8.4491 3.7298 42 1 4.1783 -9.3893 2.8037 43 1 4.1885 -8.2781 4.2428 44 1 6.3698 -5.4168 1.5229 45 1 5.6197 -4.0445 2.3734 46 1 5.7464 -4.4660 -0.6483 47 1 6.6228 -3.2316 0.2903 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093581321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:45 Heat of formation + Delta-G solvation = 50.112073 kcal Electronic energy + Delta-G solvation = -28931.734770 eV Core-core repulsion = 24925.172720 eV Total energy + Delta-G solvation = -4006.562049 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.70539 -40.08142 -38.64676 -37.30492 -35.45301 -33.64556 -32.56923 -31.94971 -31.15236 -30.77786 -27.62642 -27.30919 -25.32363 -24.73744 -23.52594 -23.18580 -22.55325 -21.09914 -20.69540 -19.93556 -19.25485 -18.15255 -17.03633 -16.74202 -16.24107 -16.14806 -16.05447 -15.00364 -14.89243 -14.58386 -14.46544 -14.25211 -14.11710 -13.85264 -13.68809 -13.34193 -13.15096 -12.93166 -12.86323 -12.58949 -12.32339 -11.99703 -11.88244 -11.64940 -11.25986 -11.17931 -11.06503 -10.84613 -10.66329 -10.56941 -10.52214 -10.44828 -10.28841 -9.96092 -9.60194 -9.47037 -8.99082 -8.76200 -8.68488 -8.60578 -6.86077 -5.74146 -3.07002 1.01431 2.17168 2.22714 3.07206 3.09957 3.41602 3.45177 3.46825 3.81218 4.04592 4.41973 4.51193 4.67421 4.82684 4.84467 4.98097 5.07160 5.24164 5.26178 5.32169 5.37766 5.45008 5.48857 5.49889 5.55678 5.58869 5.63207 5.66588 5.70144 5.80905 5.89457 5.96879 6.03899 6.17090 6.33955 6.41948 6.45937 6.61436 6.68480 6.70491 6.85630 7.08677 7.17552 7.27794 7.42314 7.56471 7.83289 7.94218 8.02062 9.06804 9.72677 10.62261 11.42947 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014844 B = 0.002597 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.778121 B =10780.147162 C =12465.196261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.002 3.998 3 C -0.024 4.024 4 N -0.523 5.523 5 H 0.431 0.569 6 C 0.157 3.843 7 C 0.605 3.395 8 O -0.550 6.550 9 N -0.581 5.581 10 C 0.056 3.944 11 C -0.152 4.152 12 C 0.090 3.910 13 O -0.374 6.374 14 C 0.035 3.965 15 C 0.151 3.849 16 N -0.609 5.609 17 C -0.222 4.222 18 H 0.080 0.920 19 C -0.008 4.008 20 N -0.920 5.920 21 Si 0.914 3.086 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.284 1.284 25 C 0.120 3.880 26 C -0.130 4.130 27 C 0.115 3.885 28 N -0.433 5.433 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.187 0.813 33 H 0.163 0.837 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.033 0.967 40 H 0.072 0.928 41 H 0.254 0.746 42 H 0.045 0.955 43 H 0.042 0.958 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.589 20.933 -10.734 24.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.131 4.131 3 C -0.163 4.163 4 N -0.124 5.124 5 H 0.270 0.730 6 C -0.104 4.104 7 C 0.390 3.610 8 O -0.428 6.428 9 N -0.312 5.312 10 C -0.066 4.066 11 C -0.190 4.190 12 C 0.032 3.968 13 O -0.292 6.292 14 C -0.024 4.024 15 C 0.025 3.975 16 N -0.338 5.338 17 C -0.349 4.349 18 H 0.098 0.902 19 C -0.205 4.205 20 N -0.567 5.567 21 Si 0.744 3.256 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.211 1.211 25 C -0.006 4.006 26 C -0.169 4.169 27 C -0.007 4.007 28 N -0.157 5.157 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.204 0.796 33 H 0.179 0.821 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.051 0.949 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.729 20.208 -10.569 24.079 hybrid contribution -0.160 0.184 0.249 0.348 sum 7.569 20.392 -10.320 24.075 Atomic orbital electron populations 1.20120 0.86741 1.03187 1.02919 1.21094 0.97246 0.88039 1.06733 1.22734 0.82821 1.01089 1.09660 1.42840 1.09292 1.07385 1.52891 0.72969 1.22618 0.93647 0.82305 1.11802 1.16520 0.85386 0.81783 0.77265 1.90816 1.24160 1.75758 1.52050 1.47838 1.09134 1.04696 1.69525 1.23171 0.84198 1.01589 0.97634 1.22340 1.00295 0.98066 0.98303 1.22059 0.93957 0.91600 0.89216 1.87933 1.71265 1.35716 1.34251 1.25050 0.93621 0.84715 0.98967 1.22745 0.93677 0.85355 0.95711 1.45695 1.00075 1.06057 1.81947 1.18940 0.87788 0.87530 1.40691 0.90195 1.24800 0.96402 0.97106 1.02148 1.69818 1.10039 1.21944 1.54901 0.86178 0.79569 0.81551 0.78323 1.21168 1.21522 1.21070 1.22736 0.88317 0.93482 0.96061 1.21991 0.97757 0.99098 0.98025 1.21712 0.88928 0.91981 0.98050 1.69546 0.99384 1.29242 1.17525 0.90800 0.91059 0.90576 0.79588 0.82123 0.91611 0.89616 0.91129 0.92379 0.90227 0.94909 0.90930 0.93570 0.93670 0.94078 0.89825 0.90763 0.90801 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.42 36.01 0.38 -0.11 16 2 C 0.00 0.01 7.07 -83.00 -0.59 -0.57 16 3 C -0.02 -0.17 11.91 -16.93 -0.20 -0.37 16 4 N -0.52 -4.28 6.15 -10.78 -0.07 -4.35 16 5 H 0.43 2.55 8.96 -40.82 -0.37 2.19 16 6 C 0.16 1.80 7.74 -154.52 -1.20 0.60 16 7 C 0.60 7.78 7.69 -12.53 -0.10 7.69 16 8 O -0.55 -7.96 16.52 5.28 0.09 -7.88 16 9 N -0.58 -7.08 2.98 -174.31 -0.52 -7.60 16 10 C 0.06 0.68 6.28 -3.93 -0.02 0.66 16 11 C -0.15 -2.10 5.68 -26.84 -0.15 -2.26 16 12 C 0.09 1.28 2.57 -26.69 -0.07 1.21 16 13 O -0.37 -6.70 10.01 -35.23 -0.35 -7.06 16 14 C 0.03 0.70 4.44 -25.81 -0.11 0.58 16 15 C 0.15 3.70 7.36 -2.84 -0.02 3.67 16 16 N -0.61 -16.26 3.70 -178.00 -0.66 -16.92 16 17 C -0.22 -6.37 10.70 -15.06 -0.16 -6.54 16 18 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 20 N -0.92 -27.57 11.39 55.49 0.63 -26.94 16 21 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 C 0.12 2.62 8.77 -2.97 -0.03 2.59 16 26 C -0.13 -1.56 5.73 -26.61 -0.15 -1.71 16 27 C 0.12 1.26 6.43 -3.71 -0.02 1.24 16 28 N -0.43 -4.99 7.51 -7.50 -0.06 -5.05 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.19 0.53 8.06 -52.49 -0.42 0.11 16 33 H 0.16 2.03 3.67 -81.36 -0.30 1.73 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.78 7.43 -51.93 -0.39 0.40 16 38 H 0.08 1.51 7.47 -51.93 -0.39 1.12 16 39 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 1.91 7.16 -51.93 -0.37 1.54 16 41 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 43 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.10 1.06 7.03 -51.93 -0.36 0.69 16 LS Contribution 381.05 15.07 5.74 5.74 Total: -1.00 -34.75 381.05 -9.98 -44.73 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.22 Total: 1.64 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: -2.55 Total: 6.36 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: -0.67 Total: -60.84 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.27 Total: -14.93 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.75 -9.98 -44.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093581321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.846 kcal (2) G-P(sol) polarization free energy of solvation -34.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds