Wall clock time and date at job start Tue Mar 31 2020 18:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35558 * 125.82059 * 2 1 4 4 N 1.35406 * 107.15863 * 179.97438 * 3 2 1 5 5 H 0.97001 * 126.43814 * 180.26418 * 4 3 2 6 6 C 1.36667 * 107.12222 * 0.02562 * 4 3 2 7 7 C 1.47406 * 125.86328 * 180.02562 * 6 4 3 8 8 O 1.21595 * 120.00361 * 353.39579 * 7 6 4 9 9 N 1.34778 * 119.99710 * 173.39766 * 7 6 4 10 10 C 1.46929 * 120.63065 * 3.93873 * 9 7 6 11 11 C 1.52757 * 109.00638 * 233.58276 * 10 9 7 12 12 C 1.53036 * 109.38492 * 305.58722 * 11 10 9 13 13 O 1.42901 * 109.46113 * 181.26134 * 12 11 10 14 14 C 1.42901 * 114.00406 * 89.93188 * 13 12 11 15 15 C 1.53945 * 113.74374 * 248.74342 * 14 13 12 16 16 N 1.47812 * 86.03325 * 222.07898 * 15 14 13 17 17 C 1.36936 * 134.45129 * 204.64043 * 16 15 14 18 18 H 1.08008 * 119.99681 * 179.87368 * 17 16 15 19 19 C 1.38804 * 120.00363 * 359.86960 * 17 16 15 20 20 N 1.31622 * 120.00107 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00282 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46891 * 60.00163 * 21 19 17 23 23 H 1.48496 * 109.47519 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47197 * 300.00739 * 21 19 17 25 25 C 1.47576 * 91.05199 * 24.55299 * 16 15 14 26 26 C 1.53040 * 109.53727 * 61.24127 * 12 11 10 27 27 C 1.46928 * 120.62860 * 184.21509 * 9 7 6 28 28 N 1.31618 * 108.27189 * 359.97438 * 6 4 3 29 29 H 1.09004 * 109.46901 * 269.99416 * 1 2 3 30 30 H 1.08995 * 109.47184 * 29.99720 * 1 2 3 31 31 H 1.09000 * 109.46972 * 149.99409 * 1 2 3 32 32 H 1.07999 * 126.42517 * 0.02562 * 3 2 1 33 33 H 1.08994 * 109.58643 * 353.41852 * 10 9 7 34 34 H 1.09006 * 109.58428 * 113.84219 * 10 9 7 35 35 H 1.09005 * 109.56632 * 185.55414 * 11 10 9 36 36 H 1.09000 * 109.35986 * 65.50386 * 11 10 9 37 37 H 1.08993 * 109.45313 * 301.22593 * 12 11 10 38 38 H 1.09005 * 112.93838 * 20.33341 * 14 13 12 39 39 H 1.08997 * 113.77096 * 336.34451 * 15 14 13 40 40 H 1.09003 * 113.76603 * 107.74104 * 15 14 13 41 41 H 0.96997 * 120.00158 * 179.97438 * 20 19 17 42 42 H 1.09007 * 113.76461 * 221.14991 * 25 16 15 43 43 H 1.08994 * 113.77646 * 89.75263 * 25 16 15 44 44 H 1.09003 * 109.50057 * 178.68202 * 26 12 11 45 45 H 1.08997 * 109.52560 * 58.60367 * 26 12 11 46 46 H 1.09001 * 109.58542 * 246.15411 * 27 9 7 47 47 H 1.08996 * 109.58533 * 6.44234 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3004 1.0992 0.0000 4 7 3.5833 0.6659 0.0006 5 1 4.3788 1.2209 0.0043 6 6 3.5466 -0.7003 0.0003 7 6 4.7175 -1.5957 0.0013 8 8 5.8360 -1.1340 -0.1187 9 7 4.5484 -2.9261 0.1352 10 6 3.2002 -3.5070 0.1946 11 6 3.0853 -4.3704 1.4495 12 6 4.2157 -5.4019 1.4616 13 8 4.0927 -6.2295 2.6200 14 6 3.2911 -7.3954 2.4191 15 6 1.9550 -7.3683 3.1833 16 7 2.2255 -8.7864 3.5005 17 6 1.4432 -9.8631 3.8229 18 1 1.8985 -10.8238 4.0132 19 6 0.0650 -9.7198 3.9050 20 7 -0.4900 -8.5492 3.6727 21 14 -1.0023 -11.1887 4.3440 22 1 -0.6143 -11.6999 5.6832 23 1 -2.4285 -10.7756 4.3655 24 1 -0.8125 -12.2586 3.3319 25 6 3.6761 -8.5765 3.3283 26 6 5.5657 -4.6816 1.4907 27 6 5.7087 -3.8223 0.2305 28 7 2.2861 -1.0792 0.0002 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5139 32 1 1.9711 2.1277 0.0004 33 1 2.4595 -2.7084 0.2331 34 1 3.0292 -4.1245 -0.6873 35 1 2.1240 -4.8842 1.4525 36 1 3.1620 -3.7362 2.3327 37 1 4.1530 -6.0197 0.5658 38 1 3.1901 -7.6655 1.3679 39 1 1.9608 -6.7142 4.0552 40 1 1.0857 -7.2181 2.5431 41 1 -1.4531 -8.4491 3.7298 42 1 4.1783 -9.3893 2.8037 43 1 4.1885 -8.2781 4.2428 44 1 6.3698 -5.4168 1.5229 45 1 5.6197 -4.0445 2.3734 46 1 5.7464 -4.4660 -0.6483 47 1 6.6228 -3.2316 0.2903 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093581321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:44 Heat of formation + Delta-G solvation = 27.228012 kcal Electronic energy + Delta-G solvation = -28932.727097 eV Core-core repulsion = 24925.172720 eV Total energy + Delta-G solvation = -4007.554377 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.40569 -41.09348 -40.14568 -38.63779 -36.85642 -34.38785 -34.12238 -33.29773 -32.28079 -31.62332 -29.44872 -28.17625 -26.61381 -26.28489 -24.86828 -24.50338 -23.70799 -22.05273 -21.43737 -21.26360 -20.59371 -19.01322 -18.77174 -18.09063 -17.57217 -17.02045 -16.92165 -16.91686 -15.99560 -15.78834 -15.74768 -15.33185 -15.15157 -14.96717 -14.94503 -14.57780 -14.28731 -14.05859 -13.62358 -13.57459 -13.45551 -13.31749 -13.18121 -12.98929 -12.86146 -12.82983 -12.72957 -12.32716 -12.23053 -11.97909 -11.84348 -11.53691 -11.53147 -11.39968 -11.24590 -10.86064 -10.64336 -10.04518 -9.90843 -9.38100 -8.96767 -7.91021 -5.26758 0.24168 1.42421 1.46158 1.50431 1.51653 1.56588 2.21600 2.35854 2.43520 2.73646 3.03491 3.28055 3.45792 3.68024 3.80149 3.86949 3.99693 4.09259 4.09928 4.12560 4.19840 4.32671 4.38149 4.38791 4.54935 4.66414 4.74951 4.76784 4.85769 4.86218 4.92908 4.95558 4.96553 5.00139 5.05187 5.15339 5.20553 5.23906 5.26133 5.37120 5.46100 5.49219 5.87079 5.89128 6.12815 6.20647 6.46951 6.65312 6.89443 6.95804 7.58133 8.53364 9.25773 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014844 B = 0.002597 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.778121 B =10780.147162 C =12465.196261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.029 4.029 3 C 0.007 3.993 4 N -0.513 5.513 5 H 0.441 0.559 6 C 0.119 3.881 7 C 0.602 3.398 8 O -0.573 6.573 9 N -0.584 5.584 10 C 0.064 3.936 11 C -0.145 4.145 12 C 0.083 3.917 13 O -0.382 6.382 14 C 0.070 3.930 15 C 0.148 3.852 16 N -0.639 5.639 17 C -0.240 4.240 18 H 0.087 0.913 19 C -0.067 4.067 20 N -0.953 5.953 21 Si 0.984 3.016 22 H -0.278 1.278 23 H -0.293 1.293 24 H -0.272 1.272 25 C 0.120 3.880 26 C -0.120 4.120 27 C 0.117 3.883 28 N -0.453 5.453 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.233 0.767 33 H 0.161 0.839 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.009 0.991 40 H 0.046 0.954 41 H 0.250 0.750 42 H 0.069 0.931 43 H 0.043 0.957 44 H 0.100 0.900 45 H 0.060 0.940 46 H 0.094 0.906 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.156 21.607 -11.789 25.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.162 4.162 3 C -0.132 4.132 4 N -0.116 5.116 5 H 0.282 0.718 6 C -0.140 4.140 7 C 0.389 3.611 8 O -0.453 6.453 9 N -0.315 5.315 10 C -0.058 4.058 11 C -0.183 4.183 12 C 0.026 3.974 13 O -0.300 6.300 14 C 0.011 3.989 15 C 0.022 3.978 16 N -0.367 5.367 17 C -0.367 4.367 18 H 0.105 0.895 19 C -0.260 4.260 20 N -0.601 5.601 21 Si 0.812 3.188 22 H -0.204 1.204 23 H -0.219 1.219 24 H -0.198 1.198 25 C -0.005 4.005 26 C -0.159 4.159 27 C -0.005 4.005 28 N -0.177 5.177 29 H 0.091 0.909 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.250 0.750 33 H 0.177 0.823 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.115 0.885 39 H 0.027 0.973 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.087 0.913 43 H 0.061 0.939 44 H 0.118 0.882 45 H 0.079 0.921 46 H 0.112 0.888 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.357 20.874 -11.628 25.313 hybrid contribution -0.341 0.117 0.592 0.693 sum 8.016 20.990 -11.037 25.033 Atomic orbital electron populations 1.20173 0.85407 1.03970 1.03112 1.21623 0.98391 0.88245 1.07905 1.23469 0.81622 1.02476 1.05683 1.42910 1.10371 1.06484 1.51793 0.71767 1.22340 0.93188 0.83448 1.15032 1.16733 0.85636 0.82020 0.76692 1.90786 1.25073 1.76113 1.53340 1.47902 1.09266 1.04899 1.69397 1.23076 0.84550 1.01315 0.96820 1.22240 0.99500 0.97931 0.98676 1.22344 0.95245 0.91377 0.88454 1.87919 1.70301 1.35380 1.36402 1.24458 0.90694 0.84945 0.98809 1.22639 0.95499 0.84541 0.95116 1.46081 1.02388 1.06201 1.82071 1.19390 0.88579 0.88597 1.40182 0.89480 1.25719 0.97765 0.99998 1.02539 1.70023 1.09858 1.24057 1.56156 0.85074 0.77148 0.78273 0.78343 1.20421 1.21879 1.19788 1.22869 0.86056 0.94890 0.96678 1.21919 0.96729 0.99104 0.98105 1.21784 0.88601 0.91891 0.98190 1.69396 0.99850 1.30841 1.17644 0.90861 0.88246 0.91861 0.75045 0.82289 0.90619 0.91288 0.92793 0.90787 0.88508 0.97290 0.93548 0.94122 0.91327 0.93877 0.88159 0.92102 0.88800 0.88420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.42 71.24 0.74 -0.09 16 2 C -0.03 -0.49 7.07 41.75 0.30 -0.19 16 3 C 0.01 0.08 11.91 83.52 0.99 1.07 16 4 N -0.51 -7.61 6.15 -188.02 -1.16 -8.77 16 5 H 0.44 4.52 8.96 -92.71 -0.83 3.69 16 6 C 0.12 2.68 7.74 136.28 1.05 3.73 16 7 C 0.60 15.44 7.69 86.66 0.67 16.11 16 8 O -0.57 -16.51 16.52 -4.01 -0.07 -16.58 16 9 N -0.58 -14.01 2.98 -823.65 -2.45 -16.47 16 10 C 0.06 1.57 6.28 86.22 0.54 2.11 16 11 C -0.14 -4.11 5.68 30.53 0.17 -3.93 16 12 C 0.08 2.29 2.57 30.62 0.08 2.37 16 13 O -0.38 -13.47 10.01 -148.98 -1.49 -14.96 16 14 C 0.07 2.75 4.44 31.25 0.14 2.89 16 15 C 0.15 7.49 7.36 86.44 0.64 8.12 16 16 N -0.64 -34.40 3.70 -720.92 -2.67 -37.07 16 17 C -0.24 -13.82 10.70 84.03 0.90 -12.92 16 18 H 0.09 4.74 7.83 -2.91 -0.02 4.72 16 19 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 20 N -0.95 -58.61 11.39 21.65 0.25 -58.37 16 21 Si 0.98 46.19 29.55 68.60 2.03 48.21 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 C 0.12 5.12 8.77 86.49 0.76 5.88 16 26 C -0.12 -2.73 5.73 30.67 0.18 -2.55 16 27 C 0.12 2.40 6.43 86.36 0.55 2.96 16 28 N -0.45 -10.36 7.51 -177.63 -1.33 -11.69 16 29 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.23 0.22 8.06 -2.91 -0.02 0.20 16 33 H 0.16 4.11 3.67 -60.50 -0.22 3.89 16 34 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 36 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.07 1.84 7.43 -2.39 -0.02 1.83 16 38 H 0.10 3.51 7.47 -2.38 -0.02 3.49 16 39 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.05 2.56 7.16 -2.39 -0.02 2.55 16 41 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 42 H 0.07 2.61 8.14 -2.38 -0.02 2.60 16 43 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.10 2.04 7.03 -2.39 -0.02 2.02 16 Total: -1.00 -76.97 381.05 1.23 -75.74 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -0.05 Total: 17.83 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: 8.18 Total: 22.11 kcal Atomic # 7 Polarization: -124.99 SS G_CDS: -7.37 Total: -132.36 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: -1.56 Total: -31.54 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.21 kcal Total: -76.97 1.23 -75.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093581321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.971 kcal (2) G-P(sol) polarization free energy of solvation -76.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds