Wall clock time and date at job start Tue Mar 31 2020 18:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33320 * 126.10821 * 2 1 4 4 C 1.30850 * 109.68988 * 180.27276 * 3 2 1 5 5 N 1.34498 * 109.15997 * 359.76295 * 4 3 2 6 6 H 0.96999 * 126.47390 * 180.02562 * 5 4 3 7 7 C 1.36659 * 126.10561 * 179.87467 * 2 1 3 8 8 C 1.46761 * 126.84808 * 359.97438 * 7 2 1 9 9 O 1.21681 * 120.00506 * 256.31331 * 8 7 2 10 10 N 1.34779 * 119.99668 * 76.31587 * 8 7 2 11 11 C 1.46929 * 120.62897 * 354.79090 * 10 8 7 12 12 C 1.53619 * 108.54135 * 126.37506 * 11 10 8 13 13 C 1.53041 * 109.24696 * 54.85175 * 12 11 10 14 14 O 1.42901 * 109.46264 * 178.49042 * 13 12 11 15 15 C 1.42896 * 113.99997 * 270.07041 * 14 13 12 16 16 C 1.53947 * 113.74043 * 248.73965 * 15 14 13 17 17 N 1.47821 * 86.03455 * 222.08437 * 16 15 14 18 18 C 1.36935 * 134.45644 * 204.64212 * 17 16 15 19 19 H 1.07997 * 120.00571 * 179.86896 * 18 17 16 20 20 C 1.38821 * 119.99759 * 359.86942 * 18 17 16 21 21 N 1.31617 * 120.00225 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99886 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47141 * 89.99957 * 22 20 18 24 24 H 1.48497 * 109.47351 * 210.00040 * 22 20 18 25 25 H 1.48505 * 109.47290 * 330.00137 * 22 20 18 26 26 C 1.47580 * 91.05167 * 24.55169 * 17 16 15 27 27 C 1.53040 * 109.53824 * 298.51346 * 13 12 11 28 28 C 1.46922 * 120.63128 * 175.07397 * 10 8 7 29 29 H 1.09007 * 109.47289 * 270.12497 * 1 2 3 30 30 H 1.08999 * 109.47333 * 30.12518 * 1 2 3 31 31 H 1.08997 * 109.47080 * 150.12702 * 1 2 3 32 32 H 1.08000 * 125.42319 * 179.78293 * 4 3 2 33 33 H 1.09000 * 109.58473 * 246.20324 * 11 10 8 34 34 H 1.08991 * 109.58655 * 6.62468 * 11 10 8 35 35 H 1.09007 * 109.63336 * 294.85789 * 12 11 10 36 36 H 1.09004 * 109.43227 * 174.72290 * 12 11 10 37 37 H 1.09004 * 109.44432 * 58.52603 * 13 12 11 38 38 H 1.08999 * 112.94771 * 20.33540 * 15 14 13 39 39 H 1.08998 * 113.77215 * 336.34804 * 16 15 14 40 40 H 1.08996 * 113.76837 * 107.75063 * 16 15 14 41 41 H 0.96995 * 120.00108 * 180.02562 * 21 20 18 42 42 H 1.09002 * 113.76528 * 221.15063 * 26 17 16 43 43 H 1.08994 * 113.77365 * 89.75087 * 26 17 16 44 44 H 1.09000 * 109.49540 * 301.41011 * 27 13 12 45 45 H 1.09002 * 109.52407 * 181.32946 * 27 13 12 46 46 H 1.08998 * 109.58588 * 353.37077 * 28 10 8 47 47 H 1.09002 * 109.58901 * 113.64804 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5478 0.7073 -0.0059 5 7 3.6121 -0.6362 -0.0046 6 1 4.4188 -1.1748 -0.0077 7 6 2.3123 -1.1041 0.0024 8 6 1.8821 -2.5072 0.0060 9 8 1.9424 -3.1596 1.0314 10 7 1.4201 -3.0733 -1.1266 11 6 1.2340 -2.2702 -2.3428 12 6 1.9925 -2.9460 -3.4952 13 6 1.5259 -4.3978 -3.6235 14 8 2.2032 -5.0208 -4.7168 15 6 1.5252 -4.8948 -5.9683 16 6 0.9583 -6.2226 -6.5025 17 7 1.4546 -5.7843 -7.8241 18 6 1.1122 -6.0677 -9.1194 19 1 1.6451 -5.5993 -9.9337 20 6 0.0801 -6.9570 -9.3858 21 7 -0.5697 -7.5274 -8.3935 22 14 -0.3874 -7.3431 -11.1526 23 1 0.4043 -8.5046 -11.6316 24 1 -1.8347 -7.6680 -11.2221 25 1 -0.1033 -6.1635 -12.0089 26 6 2.4650 -4.9173 -7.1875 27 6 1.8423 -5.1533 -2.3307 28 6 1.0873 -4.5037 -1.1667 29 1 -0.3634 0.0022 1.0277 30 1 -0.3634 0.8888 -0.5158 31 1 -0.3633 -0.8911 -0.5118 32 1 4.3970 1.3745 -0.0106 33 1 0.1726 -2.2133 -2.5842 34 1 1.6286 -1.2670 -2.1822 35 1 3.0632 -2.9245 -3.2912 36 1 1.7881 -2.4146 -4.4247 37 1 0.4510 -4.4190 -3.8027 38 1 0.8079 -4.0742 -5.9823 39 1 1.4659 -7.1053 -6.1133 40 1 -0.1276 -6.2931 -6.4410 41 1 -1.2906 -8.1491 -8.5796 42 1 2.5797 -3.9475 -7.6718 43 1 3.4160 -5.4156 -6.9998 44 1 2.9142 -5.1111 -2.1377 45 1 1.5313 -6.1932 -2.4310 46 1 1.3851 -4.9746 -0.2299 47 1 0.0137 -4.6252 -1.3115 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093600749.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:49 Heat of formation + Delta-G solvation = 37.817961 kcal Electronic energy + Delta-G solvation = -28948.444005 eV Core-core repulsion = 24941.348843 eV Total energy + Delta-G solvation = -4007.095162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.61171 -40.22372 -38.75146 -37.39428 -35.52974 -33.66062 -32.60093 -31.99986 -31.32196 -30.91784 -27.79174 -27.40847 -25.21937 -24.80237 -23.79842 -23.17141 -22.56774 -21.66300 -20.56486 -19.69467 -19.33173 -18.44831 -17.31787 -16.87394 -16.39729 -16.19664 -15.76943 -15.35090 -15.05375 -14.71503 -14.57011 -14.52529 -14.13377 -13.82695 -13.69150 -13.33991 -13.25390 -13.14993 -12.89801 -12.62941 -12.48954 -12.08340 -11.98019 -11.77796 -11.49419 -11.25114 -11.17490 -10.92337 -10.87778 -10.71814 -10.54332 -10.38291 -10.31767 -10.16462 -10.02093 -9.58226 -9.06593 -8.83831 -8.82839 -8.73976 -6.93612 -5.81014 -3.14069 1.29313 1.85836 2.47257 2.65258 2.98192 3.36663 3.41105 3.43490 3.88125 4.02618 4.19995 4.44644 4.51186 4.64305 4.73916 4.78226 4.79684 5.02059 5.03320 5.16391 5.24645 5.33189 5.35620 5.38640 5.44476 5.46976 5.50697 5.55095 5.59006 5.61860 5.65962 5.71259 5.80824 5.96014 6.10720 6.17899 6.23518 6.36544 6.58399 6.61026 6.82871 6.93424 7.06483 7.19755 7.48975 7.54027 7.68939 7.82174 7.93765 9.00100 9.66042 10.54503 11.36218 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023458 B = 0.002208 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.320777 B =12679.311587 C =12998.296200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.057 3.943 3 N -0.491 5.491 4 C 0.208 3.792 5 N -0.543 5.543 6 H 0.426 0.574 7 C -0.072 4.072 8 C 0.597 3.403 9 O -0.529 6.529 10 N -0.597 5.597 11 C 0.107 3.893 12 C -0.155 4.155 13 C 0.091 3.909 14 O -0.373 6.373 15 C 0.034 3.966 16 C 0.149 3.851 17 N -0.609 5.609 18 C -0.222 4.222 19 H 0.081 0.919 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.914 3.086 23 H -0.288 1.288 24 H -0.289 1.289 25 H -0.280 1.280 26 C 0.121 3.879 27 C -0.130 4.130 28 C 0.114 3.886 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.216 0.784 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.034 0.966 40 H 0.073 0.927 41 H 0.254 0.746 42 H 0.045 0.955 43 H 0.042 0.958 44 H 0.072 0.928 45 H 0.089 0.911 46 H 0.098 0.902 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.706 14.658 18.355 24.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.076 4.076 3 N -0.211 5.211 4 C -0.076 4.076 5 N -0.147 5.147 6 H 0.264 0.736 7 C -0.190 4.190 8 C 0.382 3.618 9 O -0.404 6.404 10 N -0.330 5.330 11 C -0.015 4.015 12 C -0.193 4.193 13 C 0.032 3.968 14 O -0.291 6.291 15 C -0.024 4.024 16 C 0.024 3.976 17 N -0.337 5.337 18 C -0.350 4.350 19 H 0.099 0.901 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.744 3.256 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.206 1.206 26 C -0.005 4.005 27 C -0.168 4.168 28 C -0.007 4.007 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.232 0.768 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.052 0.948 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.091 0.909 45 H 0.107 0.893 46 H 0.116 0.884 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.417 14.853 18.674 24.468 hybrid contribution 0.475 -1.196 -1.103 1.695 sum 5.891 13.657 17.571 23.021 Atomic orbital electron populations 1.20200 0.86984 1.03266 1.03056 1.20936 0.96561 0.86788 1.03336 1.70036 1.00461 1.30262 1.20324 1.25089 0.97369 0.81774 1.03384 1.43178 1.07560 1.08643 1.55278 0.73559 1.20564 0.85355 0.94938 1.18141 1.16941 0.77574 0.83995 0.83306 1.90851 1.55047 1.63090 1.31439 1.48099 1.64086 1.10254 1.10560 1.21939 1.01133 0.94997 0.83461 1.22540 1.01156 0.97264 0.98359 1.21965 0.96408 0.90828 0.87588 1.87958 1.48672 1.76173 1.16256 1.25043 0.95650 1.00320 0.81412 1.22749 0.99609 0.92081 0.83208 1.45693 1.36102 1.50530 1.01379 1.18990 1.13350 1.21660 0.80966 0.90079 1.24815 0.98708 0.99205 0.97743 1.69821 1.24802 1.32716 1.29423 0.86091 0.77561 0.78229 0.83701 1.21539 1.21563 1.20556 1.22722 0.93375 0.94682 0.89712 1.21981 1.01578 1.00511 0.92744 1.21724 0.99962 0.78880 1.00175 0.90657 0.90168 0.91146 0.76798 0.90401 0.89327 0.90982 0.90068 0.91801 0.90175 0.94830 0.90913 0.93565 0.93658 0.94084 0.90919 0.89282 0.88376 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.24 36.01 0.37 -0.27 16 2 C 0.06 0.58 6.37 -82.52 -0.53 0.05 16 3 N -0.49 -5.01 11.20 -10.65 -0.12 -5.13 16 4 C 0.21 1.45 13.01 -90.58 -1.18 0.27 16 5 N -0.54 -3.94 6.19 -10.79 -0.07 -4.01 16 6 H 0.43 2.01 8.96 -40.82 -0.37 1.64 16 7 C -0.07 -0.72 5.27 -82.14 -0.43 -1.15 16 8 C 0.60 6.78 7.18 -12.82 -0.09 6.69 16 9 O -0.53 -7.73 16.54 5.21 0.09 -7.64 16 10 N -0.60 -5.86 2.97 -174.02 -0.52 -6.38 16 11 C 0.11 0.93 5.89 -3.49 -0.02 0.91 16 12 C -0.15 -1.58 5.71 -26.39 -0.15 -1.73 16 13 C 0.09 1.12 2.45 -26.69 -0.07 1.05 16 14 O -0.37 -6.13 10.01 -35.23 -0.35 -6.48 16 15 C 0.03 0.64 4.29 -25.80 -0.11 0.53 16 16 C 0.15 3.53 7.36 -2.83 -0.02 3.51 16 17 N -0.61 -15.76 3.70 -177.95 -0.66 -16.42 16 18 C -0.22 -6.24 10.70 -15.06 -0.16 -6.41 16 19 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 21 N -0.92 -27.19 11.39 55.49 0.63 -26.56 16 22 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 C 0.12 2.52 8.77 -2.96 -0.03 2.50 16 27 C -0.13 -1.40 5.73 -26.61 -0.15 -1.55 16 28 C 0.11 1.10 6.42 -3.71 -0.02 1.08 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.53 7.47 -51.93 -0.39 0.14 16 32 H 0.22 0.55 8.06 -52.49 -0.42 0.13 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.76 5.77 -51.93 -0.30 0.46 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.79 7.74 -51.93 -0.40 0.38 16 38 H 0.08 1.41 7.80 -51.93 -0.41 1.00 16 39 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.07 1.87 7.16 -51.93 -0.37 1.49 16 41 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.10 1.01 7.03 -51.93 -0.37 0.64 16 47 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 383.46 15.07 5.78 5.78 Total: -1.00 -35.47 383.46 -10.15 -45.61 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -7.22 Total: -0.88 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -2.69 Total: 5.15 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -0.73 Total: -58.49 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.27 Total: -14.13 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.47 -10.15 -45.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093600749.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.432 kcal (2) G-P(sol) polarization free energy of solvation -35.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds